TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148607.14 - phase: 0 
         (359 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fr...   414  e-116
TC205506 similar to UP|Q6J1A1 (Q6J1A1) Fasciclin-like AGP 3, par...   338  2e-93
TC205507                                                              102  3e-22
BU545930                                                               71  7e-13
TC218411 similar to PIR|B96700|B96700 protein F12A21.17 [importe...    30  1.7
TC208019 homologue to UP|PPX2_ARATH (P48528) Serine/threonine pr...    29  2.9
TC212086 similar to UP|Q6RX29 (Q6RX29) RPP13-like protein (Fragm...    28  4.9
TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protei...    28  6.4
TC231043                                                               28  6.4
AW234696                                                               28  6.4

>TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fragment),
           partial (5%)
          Length = 1358

 Score =  414 bits (1064), Expect = e-116
 Identities = 210/240 (87%), Positives = 222/240 (92%)
 Frame = +2

Query: 11  VDQIVKLYERCVIACANYPEYWIRYVLCMEASESMDLANNVLARASQVFVKRQPEIHLFC 70
           + +I KLYERCVIACANYPEYWIRYVLCMEAS SM LANNVLARA+QVFVKRQPEIH+FC
Sbjct: 638 LSKIAKLYERCVIACANYPEYWIRYVLCMEASGSMYLANNVLARATQVFVKRQPEIHIFC 817

Query: 71  ARFKEQAGDIVGARAAYQLVHTEISPGLLEAIIRHANMEHRLGKLEDAFSLYEQAIAIEK 130
           ARFKEQ GDI GARAAYQLVHTE SPGLLEAII+HANME+RL K+EDAFSLYEQAIAIEK
Sbjct: 818 ARFKEQTGDIDGARAAYQLVHTETSPGLLEAIIKHANMEYRLEKMEDAFSLYEQAIAIEK 997

Query: 131 GKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGLENASLSKPLLEALLHFEAIQPQP 190
           GKEHSQTLPMLFAQYSRFVYLASGN+EKAR+ILV GLEN  LSKPLLEALLHFEAIQP P
Sbjct: 998 GKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEALLHFEAIQPLP 1177

Query: 191 KRVDIDFLESLVVKFITPNPENPGVASATEREELSNIFLEFLNLFGDVQSIKRAEDRHAK 250
           KRV +DFLES VVKFI PN E+ GVAS TEREELS+IFLEFLNLFGDVQSIKRAEDRHAK
Sbjct: 1178KRVGVDFLESWVVKFIMPNSESAGVASPTEREELSSIFLEFLNLFGDVQSIKRAEDRHAK 1357


>TC205506 similar to UP|Q6J1A1 (Q6J1A1) Fasciclin-like AGP 3, partial (6%)
          Length = 1229

 Score =  338 bits (868), Expect = 2e-93
 Identities = 169/199 (84%), Positives = 177/199 (88%)
 Frame = +2

Query: 131 GKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGLENASLSKPLLEALLHFEAIQPQP 190
           G EHS T  MLFAQYSRFVYLASGN+EKAR+ILV GLEN  LSKPLLEA+LHFEAIQP P
Sbjct: 2   GNEHSHTSSMLFAQYSRFVYLASGNAEKARQILVEGLENVLLSKPLLEAILHFEAIQPLP 181

Query: 191 KRVDIDFLESLVVKFITPNPENPGVASATEREELSNIFLEFLNLFGDVQSIKRAEDRHAK 250
           KRVDIDFLES VVKFI PN E+PGVASATEREELS+IFLEFLNLFGDVQSIKRAEDRHAK
Sbjct: 182 KRVDIDFLESWVVKFIMPNSESPGVASATEREELSSIFLEFLNLFGDVQSIKRAEDRHAK 361

Query: 251 LFLPNRGLSELKKRHAEDFLASDKTKVSRAYSAQSPAQSVAGAYPNGPNQWPNYGVQPQT 310
           LFLP+R +SELKKRHAEDFLASDKTK  R+YSAQSPAQS  GAYPN  NQW NYGVQPQT
Sbjct: 362 LFLPHRSMSELKKRHAEDFLASDKTKAPRSYSAQSPAQSGMGAYPNAQNQWSNYGVQPQT 541

Query: 311 WPATTQAQGQQWPAGYTQQ 329
           WP  TQAQGQQW AGYTQQ
Sbjct: 542 WPPVTQAQGQQWTAGYTQQ 598


>TC205507 
          Length = 623

 Score =  102 bits (254), Expect = 3e-22
 Identities = 46/57 (80%), Positives = 47/57 (81%)
 Frame = +1

Query: 273 DKTKVSRAYSAQSPAQSVAGAYPNGPNQWPNYGVQPQTWPATTQAQGQQWPAGYTQQ 329
           DKTKV R+ SAQSPAQS  GAYPN  NQW NYGVQPQTWP  TQAQGQQW AGYTQQ
Sbjct: 1   DKTKVPRSXSAQSPAQSAMGAYPNAQNQWTNYGVQPQTWPPVTQAQGQQWTAGYTQQ 171


>BU545930 
          Length = 453

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 36/125 (28%), Positives = 69/125 (54%)
 Frame = -2

Query: 108 MEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGL 167
           ME RLG  E AFS+Y++A+ +   ++    LP  +  +SR  Y ++ + + A ++L+ G+
Sbjct: 452 MEKRLGNTESAFSIYKEALKMASAEKMLHALPXXYVHFSRLKYXSTNSVDAAGDVLIDGV 273

Query: 168 ENASLSKPLLEALLHFEAIQPQPKRVDIDFLESLVVKFITPNPENPGVASATEREELSNI 227
                +K LLE L+ F  +    K + +  ++S++   I+P  E     S  + E++SN+
Sbjct: 272 RTLPQNKLLLEELIKFXMMHGGTKHMAV--IDSIIADTISPRSEGSQGFSTEDAEDISNL 99

Query: 228 FLEFL 232
           +LE +
Sbjct: 98  YLEVI 84


>TC218411 similar to PIR|B96700|B96700 protein F12A21.17 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;} , partial
           (59%)
          Length = 1850

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 34/123 (27%), Positives = 51/123 (40%), Gaps = 8/123 (6%)
 Frame = +1

Query: 60  VKRQPEIHLFCARFKEQAGDIVGARAAYQLV-----HTEISPGLLEAIIRHA-NMEHRLG 113
           ++  P         KE+AGDI GA A          +       L  I + A + + R G
Sbjct: 856 IQHMPATVATLVSLKERAGDIDGAAAVLDAAIKWWSNAMTEDNKLNTITQEAASFKLRHG 1035

Query: 114 KLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVG--GLENAS 171
           K EDA  LYEQ +   K +   + L  L    +R   + +   EK  + L G  G++  S
Sbjct: 1036KEEDAAQLYEQLV---KSQGSIEALVGLVTTVARMDVVKAELYEKQLKALPGLKGIDVDS 1206

Query: 172 LSK 174
           L +
Sbjct: 1207LER 1215


>TC208019 homologue to UP|PPX2_ARATH (P48528) Serine/threonine protein
           phosphatase PP-X isozyme 2  , partial (43%)
          Length = 791

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = -1

Query: 322 WPAGYTQQQVNWFFPSTIFLVCCFPSVQIPV 352
           WP  Y Q   + FFP  I+L   FP    P+
Sbjct: 788 WPKLYNQNSTSGFFPQIIYLESYFPIFPNPI 696


>TC212086 similar to UP|Q6RX29 (Q6RX29) RPP13-like protein (Fragment),
           partial (5%)
          Length = 571

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
 Frame = +1

Query: 210 PENPGVASATEREELSNIFLEFLNLFGDVQSIKRAEDRHAKL-----FLPNRGLSELKKR 264
           P+N G+A  TE E++++ +L+ L     VQ  KR  D   K       L +  +SE K  
Sbjct: 34  PQNIGIADTTELEDVADFYLDELVDRSLVQVAKRRSDGGVKTCRIHELLRDLCISESKSD 213

Query: 265 HAEDFLASDKTK-------VSRAYSA------QSPAQSVAGAYPN 296
             +     D++         +R+YS+      +S  +S+ GA P+
Sbjct: 214 KYDKDTEIDESNGEADIRFDARSYSSRLNSMIRSDTESILGASPD 348


>TC218002 weakly similar to UP|Q7T2E6 (Q7T2E6) XPA binding protein 2, partial
           (19%)
          Length = 1500

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 100 EAIIRHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNS-EK 158
           + II +A         EDAF +YE+ + I K   +     +     S+FV     N  E+
Sbjct: 22  QIIINYAYFLEEHKYFEDAFKVYERGVKIFK---YPHVKDIWVTYLSKFVRRYGKNKLER 192

Query: 159 AREILVGGLENASLS--KPL 176
           ARE+    +E+A     KPL
Sbjct: 193 ARELFENAVESAPADQVKPL 252


>TC231043 
          Length = 891

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 155 NSEKAREILVGGLENASLSKPLLEALLHFEAIQPQPKRVDIDFLESLVVK 204
           NS   RE+ +  +E AS  KPL+ A  H E+  P P + D  + +  VV+
Sbjct: 88  NSIMGRELCIAEVEAAS-GKPLVIATSHLESPCPAPPKWDQMYSKERVVQ 234


>AW234696 
          Length = 411

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 20/67 (29%), Positives = 33/67 (48%)
 Frame = +2

Query: 261 LKKRHAEDFLASDKTKVSRAYSAQSPAQSVAGAYPNGPNQWPNYGVQPQTWPATTQAQGQ 320
           L+ +    F  +  +++  + SA +P+ S  G+   GPN  P YG    T P+T +A   
Sbjct: 26  LRNKTTPSFHPTAISQLDSSKSATTPSASRYGS--QGPNDPPFYGWPTATSPSTAEAHTS 199

Query: 321 QWPAGYT 327
             P+G T
Sbjct: 200 --PSGKT 214


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,836,791
Number of Sequences: 63676
Number of extensions: 215822
Number of successful extensions: 1134
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of query: 359
length of database: 12,639,632
effective HSP length: 98
effective length of query: 261
effective length of database: 6,399,384
effective search space: 1670239224
effective search space used: 1670239224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)