BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.11 - phase: 0
(143 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225151 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S... 272 3e-74
TC225150 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S... 272 3e-74
TC225153 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S... 269 3e-73
TC225149 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S... 269 3e-73
BQ611583 weakly similar to GP|6984222|gb| 40S ribosomal protein ... 197 1e-51
AW156427 similar to GP|6984222|gb|A 40S ribosomal protein S16 {E... 123 3e-29
AW394862 weakly similar to GP|6984222|gb|A 40S ribosomal protein... 61 2e-10
BE059239 homologue to GP|13489167|gb| 60S ribosomal protein L21 ... 49 8e-07
BI427228 GP|15450866|gb homeotic protein BEL1 homolog {Arabidops... 28 1.9
TC212960 similar to GB|AAP31927.1|30387523|BT006583 At3g49080 {A... 27 3.3
TC213542 similar to UP|Q94BX2 (Q94BX2) AT3g50910/F18B3_190, part... 26 5.7
CA819952 25 9.7
TC216845 weakly similar to UP|Q39048 (Q39048) Cer2 protein, part... 25 9.7
TC220641 25 9.7
>TC225151 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 710
Score = 272 bits (696), Expect = 3e-74
Identities = 134/140 (95%), Positives = 137/140 (97%)
Frame = +1
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
+EQVQCFGRKK AVAVTYCKRGRGLIKING PIELVEPEILRFKAFEPILLLG+HRFAGV
Sbjct: 118 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 297
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR
Sbjct: 298 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 477
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGARARFQKSYR
Sbjct: 478 CEPKKFGGRGARARFQKSYR 537
>TC225150 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 910
Score = 272 bits (696), Expect = 3e-74
Identities = 134/140 (95%), Positives = 137/140 (97%)
Frame = +2
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
+EQVQCFGRKK AVAVTYCKRGRGLIKING PIELVEPEILRFKAFEPILLLG+HRFAGV
Sbjct: 125 IEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGV 304
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR
Sbjct: 305 DMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 484
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGARARFQKSYR
Sbjct: 485 CEPKKFGGRGARARFQKSYR 544
>TC225153 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 778
Score = 269 bits (688), Expect = 3e-73
Identities = 134/140 (95%), Positives = 136/140 (96%)
Frame = +1
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
LEQVQCFGRKK AVAVTYCKRGRGLIKING PIELVEPEILRFKAFEPILLLGK RFAGV
Sbjct: 127 LEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGV 306
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRR
Sbjct: 307 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 486
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGARARFQKSYR
Sbjct: 487 CEPKKFGGRGARARFQKSYR 546
>TC225149 homologue to UP|Q9M5L1 (Q9M5L1) 40S ribosomal protein S16
(Fragment), partial (97%)
Length = 768
Score = 269 bits (688), Expect = 3e-73
Identities = 134/140 (95%), Positives = 136/140 (96%)
Frame = +2
Query: 4 LEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
LEQVQCFGRKK AVAVTYCKRGRGLIKING PIELVEPEILRFKAFEPILLLGK RFAGV
Sbjct: 110 LEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGV 289
Query: 64 DMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 123
DMRIRV GGGHT+QIYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRR
Sbjct: 290 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 469
Query: 124 CEPKKFGGRGARARFQKSYR 143
CEPKKFGGRGARARFQKSYR
Sbjct: 470 CEPKKFGGRGARARFQKSYR 529
>BQ611583 weakly similar to GP|6984222|gb| 40S ribosomal protein S16
{Euphorbia esula}, partial (92%)
Length = 446
Score = 197 bits (502), Expect = 1e-51
Identities = 92/137 (67%), Positives = 117/137 (85%)
Frame = +2
Query: 3 KLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAG 62
K E VQ FGRKKNA+AV CK G GLI++NGAPI+++EP LR K +EP+LLLG F+
Sbjct: 35 KTEYVQTFGRKKNALAVATCKPGNGLIRVNGAPIDVLEPSTLRIKVYEPVLLLGAKTFSN 214
Query: 63 VDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPR 122
+D+R+RV GGG+T+Q+Y+IRQ+IAKA+VAY+QKYVDE SK+E+K+ L++YDRTLLVADPR
Sbjct: 215 LDIRVRVRGGGYTSQVYSIRQAIAKAIVAYHQKYVDENSKRELKERLLQYDRTLLVADPR 394
Query: 123 RCEPKKFGGRGARARFQ 139
RCEPKK GGRGARA+ Q
Sbjct: 395 RCEPKKAGGRGARAKKQ 445
>AW156427 similar to GP|6984222|gb|A 40S ribosomal protein S16 {Euphorbia
esula}, partial (54%)
Length = 391
Score = 123 bits (309), Expect = 3e-29
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = +1
Query: 66 RIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCE 125
RI V GGG+T QIY I SI+ ALVAYYQKYV EQSKKEIKDILV+Y RTLLV+DP RC+
Sbjct: 1 RIIVKGGGNTFQIYPIMHSISNALVAYYQKYVYEQSKKEIKDILVKYYRTLLVSDPSRCK 180
Query: 126 PKKFGGRGARARFQKSYR 143
PKKFGGRGARARFQK YR
Sbjct: 181 PKKFGGRGARARFQKYYR 234
>AW394862 weakly similar to GP|6984222|gb|A 40S ribosomal protein S16
{Euphorbia esula}, partial (31%)
Length = 139
Score = 60.8 bits (146), Expect = 2e-10
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +2
Query: 62 GVDMRIRVNGGGHTAQIYAIRQSIAKALVAYYQKYVDEQSKKEIKD 107
G D+RI+V GGGHT+Q+YA+RQSI+K L A Y K +EQS KEIK+
Sbjct: 2 GEDIRIKVKGGGHTSQMYAVRQSISKGLEADYHKDGNEQSTKEIKE 139
>BE059239 homologue to GP|13489167|gb| 60S ribosomal protein L21 {Oryza
sativa (japonica cultivar-group)}, partial (29%)
Length = 411
Score = 48.9 bits (115), Expect = 8e-07
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +1
Query: 123 RCEPKKFGGRGARARFQKSYR 143
RCEPKKFGGRGARARFQKSYR
Sbjct: 7 RCEPKKFGGRGARARFQKSYR 69
>BI427228 GP|15450866|gb homeotic protein BEL1 homolog {Arabidopsis
thaliana}, partial (3%)
Length = 421
Score = 27.7 bits (60), Expect = 1.9
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 62 GVDMRIRVNGGGHTAQIYAI-RQSIAKALV 90
G+D++ + GGG T +IY + R+ I K LV
Sbjct: 306 GLDIKQHLRGGGQTKEIYILHRRQIKKVLV 217
>TC212960 similar to GB|AAP31927.1|30387523|BT006583 At3g49080 {Arabidopsis
thaliana;} , partial (34%)
Length = 443
Score = 26.9 bits (58), Expect = 3.3
Identities = 21/76 (27%), Positives = 33/76 (42%), Gaps = 4/76 (5%)
Frame = +2
Query: 11 GRKKNAVAVTYCKRGRGLIKINGAPIE----LVEPEILRFKAFEPILLLGKHRFAGVDMR 66
GR+K +VA + + G G +N + ++E + F LG D+
Sbjct: 224 GRRKCSVARVWVQPGNGQFTVNDKEFDVYFPMLEHRATLLRPFSETKTLGLW-----DVD 388
Query: 67 IRVNGGGHTAQIYAIR 82
V GGG + Q+ AIR
Sbjct: 389 CTVKGGGVSGQVGAIR 436
>TC213542 similar to UP|Q94BX2 (Q94BX2) AT3g50910/F18B3_190, partial (15%)
Length = 515
Score = 26.2 bits (56), Expect = 5.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 52 ILLLGKHRFAGVDMRIRVNGGGHTAQIYAIRQSIAKALV 90
+LLL + G+ ++I + G H+ + IR I K L+
Sbjct: 417 LLLLNRFSVRGIHLKITI*TGSHSIIAHTIRNFIVKILL 301
>CA819952
Length = 421
Score = 25.4 bits (54), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 33 GAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
G+ + L + E+ +A E ILLL KHRF G+
Sbjct: 16 GSAVSLEKRELFEERA-ETILLLLKHRFPGL 105
>TC216845 weakly similar to UP|Q39048 (Q39048) Cer2 protein, partial (13%)
Length = 924
Score = 25.4 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = -1
Query: 79 YAIRQSIAKALVAYYQK------YVDEQSKKEIKDILV 110
+ +RQ I K+LV YY++ +DE+ +K +L+
Sbjct: 819 FRVRQWITKSLVFYYRQTY*MQ*QIDEKQSTRLKPVLL 706
>TC220641
Length = 771
Score = 25.4 bits (54), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 33 GAPIELVEPEILRFKAFEPILLLGKHRFAGV 63
G+ + L + E+ +A E ILLL KHRF G+
Sbjct: 515 GSAVSLEKRELFEERA-ETILLLLKHRFPGL 604
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.142 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,144,522
Number of Sequences: 63676
Number of extensions: 52774
Number of successful extensions: 276
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of query: 143
length of database: 12,639,632
effective HSP length: 88
effective length of query: 55
effective length of database: 7,036,144
effective search space: 386987920
effective search space used: 386987920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148528.11