BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148525.11 + phase: 0 /pseudo
(88 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%) 52 7e-08
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 49 6e-07
BQ576456 34 0.014
BG839790 similar to PIR|D96521|D96 protein F21D18.16 [imported] ... 33 0.019
BE609845 weakly similar to GP|3688284|emb lanatoside 15'-O-acety... 31 0.093
TC230932 29 0.46
BE805264 27 1.3
TC232972 weakly similar to UP|O82681 (O82681) Lanatoside 15'-O-a... 27 1.8
TC231735 27 1.8
TC212219 27 1.8
BG238528 homologue to GP|6224712|gb| non-phototropic hypocotyl 3... 27 2.3
TC234222 26 3.9
TC219126 similar to UP|Q7XYW9 (Q7XYW9) EXO70-G1 protein, partial... 26 3.9
TC208594 weakly similar to GB|AAS56346.1|45269930|AY558020 YNL23... 26 3.9
BU551294 26 3.9
TC206969 26 3.9
TC209384 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%) 25 5.1
TC220358 similar to GB|AAO64893.1|29029028|BT005958 At1g54570 {A... 22 5.9
BI468691 25 6.7
TC224953 similar to UP|Q8L7W8 (Q8L7W8) AT4g34260/F10M10_30, part... 25 8.7
>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
Length = 746
Score = 51.6 bits (122), Expect = 7e-08
Identities = 31/83 (37%), Positives = 41/83 (49%)
Frame = -1
Query: 1 MRVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFHLPIWEMIVTLDDLSCLLHLSIES 60
+R G W+ + YL I+ L+S ERW T +FHL E +TL D+ LL L +
Sbjct: 542 LRQCGFYWIMKMGYLKINAALISAFIERWRPETHTFHLRCGEATITLQDVLILLGLRTDG 363
Query: 61 HMLYHNIYLTRSEAVDLMVELLG 83
L I T + DL ELLG
Sbjct: 362 APL---IGSTNLDWADLCEELLG 303
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 48.5 bits (114), Expect = 6e-07
Identities = 27/83 (32%), Positives = 45/83 (53%)
Frame = -1
Query: 1 MRVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFHLPIWEMIVTLDDLSCLLHLSIES 60
+++SGL + ++ L ++ L++ ERW T +FHL E +TL D+S LL + ++
Sbjct: 393 LQISGLYPIMKLAQLKVNGALVNAFIERWRPETHTFHLKYGEATITLQDVSVLLGIPVDG 214
Query: 61 HMLYHNIYLTRSEAVDLMVELLG 83
L N T + +L ELLG
Sbjct: 213 RPLIGN---TNIDWFELFHELLG 154
>BQ576456
Length = 424
Score = 33.9 bits (76), Expect = 0.014
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = +1
Query: 42 EMIVTLDDLSCLLHLSIESHMLYHNIYLTRSEAVDLMVELL 82
E+ +TLDD++CLLHL I + L+ L EAV L++ELL
Sbjct: 34 ELTITLDDMACLLHLPI-TGALHRFEPLGVDEAVLLLMELL 153
>BG839790 similar to PIR|D96521|D96 protein F21D18.16 [imported] -
Arabidopsis thaliana, partial (2%)
Length = 504
Score = 33.5 bits (75), Expect = 0.019
Identities = 14/38 (36%), Positives = 23/38 (59%)
Frame = -1
Query: 1 MRVSGLQWLQHVSYLVIDQGLLSVIAERWHEVTSSFHL 38
+R G + +SYL I+ L++V+ ERW T +FH+
Sbjct: 258 LRQCGFY*IMKMSYLKINASLMTVLIERWRPETHTFHM 145
>BE609845 weakly similar to GP|3688284|emb lanatoside 15'-O-acetylesterase
{Digitalis lanata}, partial (27%)
Length = 430
Score = 31.2 bits (69), Expect = 0.093
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = -3
Query: 22 LSVIAERWHE---VTSSFHLPIWEMIVTLDDLSCLLHLSIESHMLYH 65
L+ + R+H + FHL IW TL D SC +SI + LYH
Sbjct: 416 LNTNSRRYHHR**IAVRFHLYIWYCRKTLMDRSCSHPISIHNTYLYH 276
>TC230932
Length = 673
Score = 28.9 bits (63), Expect = 0.46
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 41 WEMIVTLDDLSCLLHLSIESHMLYHNIYLTRSEAV 75
W M++TL + SCLL+ + +L N L SE V
Sbjct: 558 WVMLITLPEQSCLLNFFLNLPLLR*NQLLQNSEGV 662
>BE805264
Length = 445
Score = 27.3 bits (59), Expect = 1.3
Identities = 22/82 (26%), Positives = 39/82 (46%), Gaps = 14/82 (17%)
Frame = +3
Query: 11 HVSYLVIDQGLLSVIAERWHEVTSSFH-------LPIWEMIVTLDDLSC-------LLHL 56
H+ L++ LL ++ H TSS H LPIW+++ ++ LS LLHL
Sbjct: 165 HLQVLLLQLMLLKIL----HLQTSSVH*RLLEIMLPIWKILDSILQLSLLLLVVCYLLHL 332
Query: 57 SIESHMLYHNIYLTRSEAVDLM 78
E H+ ++ ++ + L+
Sbjct: 333 LCEYHLPLIQLHRCQASPLTLL 398
>TC232972 weakly similar to UP|O82681 (O82681) Lanatoside
15'-O-acetylesterase precursor, partial (45%)
Length = 570
Score = 26.9 bits (58), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 36 FHLPIWEMIVTLDDLSCLLHLSIESHMLYH 65
FHL +W L D SC L I + +LYH
Sbjct: 354 FHLSLWYCRKKLLDRSCSHPLRIHNTLLYH 265
>TC231735
Length = 707
Score = 26.9 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = -3
Query: 17 IDQGLLSVIAERWHEVTSSFHLPIWEMIVTLDDLSCLLHLS---IESHMLYH 65
+DQ L + + WH + L + + ++D SC LHL +E H LYH
Sbjct: 657 VDQKLETPV---WHSSQKPWLLKLVGGLPSVDSHSCPLHLH*VVLELHWLYH 511
>TC212219
Length = 630
Score = 26.9 bits (58), Expect = 1.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 60 SHMLYHNIYLTRSEAVDLM 78
SHMLY NI L +E VDL+
Sbjct: 584 SHMLYTNISLAATEGVDLV 528
>BG238528 homologue to GP|6224712|gb| non-phototropic hypocotyl 3
{Arabidopsis thaliana}, partial (13%)
Length = 462
Score = 26.6 bits (57), Expect = 2.3
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 50 LSCLLHLSIESHMLYHNIYLTRSE 73
L+C++H S +H+ H +YL S+
Sbjct: 362 LNCIMHYSSTNHLKPHTLYLDSSD 291
>TC234222
Length = 456
Score = 25.8 bits (55), Expect = 3.9
Identities = 15/34 (44%), Positives = 17/34 (49%)
Frame = -3
Query: 6 LQWLQHVSYLVIDQGLLSVIAERWHEVTSSFHLP 39
L+WL H S I LLSV E + E S H P
Sbjct: 112 LRWLHHDSIESIQGSLLSVRPENFSEH*QSTHRP 11
>TC219126 similar to UP|Q7XYW9 (Q7XYW9) EXO70-G1 protein, partial (20%)
Length = 1178
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/26 (38%), Positives = 18/26 (68%)
Frame = -3
Query: 50 LSCLLHLSIESHMLYHNIYLTRSEAV 75
L C ++S ++ + + N++LTRS AV
Sbjct: 219 LVCFAYISSKTSLNFFNLFLTRSRAV 142
>TC208594 weakly similar to GB|AAS56346.1|45269930|AY558020 YNL231C
{Saccharomyces cerevisiae;} , partial (8%)
Length = 1478
Score = 25.8 bits (55), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 20 GLLSVIAERWHEVTSSFHLPIWEMIVT 46
GLL ++E WH T F +W IVT
Sbjct: 207 GLLETLSEWWHGGTDRF--SVWRAIVT 133
>BU551294
Length = 469
Score = 25.8 bits (55), Expect = 3.9
Identities = 10/17 (58%), Positives = 13/17 (75%)
Frame = +3
Query: 55 HLSIESHMLYHNIYLTR 71
HLS+ES + YHN +L R
Sbjct: 75 HLSLESILNYHNFFLMR 125
>TC206969
Length = 726
Score = 25.8 bits (55), Expect = 3.9
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = +2
Query: 19 QGLLSVIAERWHEVTSSFHLPIWEMIVTLDDLSCLLHLSIESHMLY 64
+G I E+W+ SS L I V +D L + + +I SH++Y
Sbjct: 431 EGQTKRIGEKWNNFFSSLTLYILLYQVKVDMLISIHNGTISSHLVY 568
>TC209384 homologue to UP|Q71SQ1 (Q71SQ1) MYC1, partial (41%)
Length = 1054
Score = 25.4 bits (54), Expect = 5.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -1
Query: 6 LQWLQHVSYLVIDQGLLSVIAERWHEVTSSFH 37
LQ L + YL+ ++ + + WH++ +FH
Sbjct: 526 LQ*LDVIDYLI*NKCFTNYLVTPWHQILKNFH 431
>TC220358 similar to GB|AAO64893.1|29029028|BT005958 At1g54570 {Arabidopsis
thaliana;} , partial (32%)
Length = 842
Score = 22.3 bits (46), Expect(2) = 5.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 54 LHLSIESHMLYHNIYLTRSEAVD 76
LHL ++ L+H I L S+ +D
Sbjct: 495 LHLQLQMAQLWHQIVLPFSQILD 427
Score = 21.2 bits (43), Expect(2) = 5.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -1
Query: 11 HVSYLVIDQG 20
H+SYL++D G
Sbjct: 572 HISYLIVDYG 543
>BI468691
Length = 437
Score = 25.0 bits (53), Expect = 6.7
Identities = 9/16 (56%), Positives = 12/16 (74%)
Frame = -2
Query: 49 DLSCLLHLSIESHMLY 64
D +C + L IESH+LY
Sbjct: 424 DFTCFIRLVIESHILY 377
>TC224953 similar to UP|Q8L7W8 (Q8L7W8) AT4g34260/F10M10_30, partial (8%)
Length = 536
Score = 24.6 bits (52), Expect = 8.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 36 FHLPIWEMIVTLDDLSCLLHLSIESHMLYHNIYLT 70
F + +W I LSC L L +SH++ N+ T
Sbjct: 389 FDVVLWNKI----HLSCFLILFFQSHLVTENVIFT 481
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,775,048
Number of Sequences: 63676
Number of extensions: 66628
Number of successful extensions: 435
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of query: 88
length of database: 12,639,632
effective HSP length: 64
effective length of query: 24
effective length of database: 8,564,368
effective search space: 205544832
effective search space used: 205544832
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148525.11