TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148485.3 - phase: 0 /pseudo
         (138 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, part...    42  2e-06
CK606293                                                               33  0.033
BE819956 similar to GP|20522008|db pleiotropic drug resistance l...    31  0.16
TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partia...    30  0.28
TC203468                                                               27  2.4
TC229218                                                               27  4.1
TC222300 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {A...    25  9.0

>TC214401 weakly similar to UP|Q949G3 (Q949G3) ABC1 protein, partial (18%)
          Length = 1177

 Score = 41.6 bits (96), Expect(2) = 2e-06
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 1   MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
           ++YLH+I S KKPL +L +VSGIIKP+R
Sbjct: 718 LNYLHIIPSPKKPLRILQNVSGIIKPRR 801



 Score = 25.0 bits (53), Expect(2) = 2e-06
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 29  SSEFWKDYIVVGIGGKT 45
           ++ FWKD+  V +G KT
Sbjct: 819 ATRFWKDHFAVSVGWKT 869


>CK606293 
          Length = 782

 Score = 33.5 bits (75), Expect = 0.033
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -3

Query: 1   MSYLHLILSRKKPLAVLHDVSGIIKPKR 28
           ++ LH++ +RK+ L +L DVSGIIKP R
Sbjct: 213 LNSLHVLPNRKQHLNILEDVSGIIKPGR 130


>BE819956 similar to GP|20522008|db pleiotropic drug resistance like protein
           {Nicotiana tabacum}, partial (6%)
          Length = 673

 Score = 31.2 bits (69), Expect = 0.16
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 109 GLDFCADTMVGGDMIRGTLSGPKREL 134
           GL+ CADT+VG  M+RG   G ++ +
Sbjct: 445 GLEVCADTIVGNAMLRGISGGQRKRV 368


>TC218418 homologue to UP|Q6X4V5 (Q6X4V5) ABC transporter, partial (49%)
          Length = 1220

 Score = 30.4 bits (67), Expect = 0.28
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 94  AKKTNIVTGYIIKILGLDFCADTMVGGDMIRGTLSGPKRELEL 136
           A K  +V   I+  +GL  CADT++G   +RG   G KR + +
Sbjct: 577 ADKRALVESTIVA-MGLQDCADTVIGNWHLRGISGGEKRRVSI 702


>TC203468 
          Length = 887

 Score = 27.3 bits (59), Expect = 2.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -1

Query: 12  KPLAVLHDVSGIIKPKRSSE 31
           KPL VLH+ S II  KRS++
Sbjct: 146 KPLIVLHETSNIINVKRSTK 87


>TC229218 
          Length = 966

 Score = 26.6 bits (57), Expect = 4.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -1

Query: 4   LHLILSRKKPLAVLHDVSGIIKPKRSSEFWKD 35
           +H++L++   +  +HD+  + K K +S+ WK+
Sbjct: 627 MHILLTKHMIIKNIHDIQLLTKSKLTSQ*WKN 532


>TC222300 similar to GB|AAP37786.1|30725528|BT008427 At1g51560 {Arabidopsis
           thaliana;} , partial (37%)
          Length = 801

 Score = 25.4 bits (54), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (50%)
 Frame = +1

Query: 100 VTGYIIKILGLDFCADTMVGGDMIRGTLSGPKRELEL 136
           +T   I  +GL  C D ++G   +RG   G K+ L +
Sbjct: 4   ITDATIIEMGLQDCDDRLIGKWHLRGISGGEKKRLSI 114


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.351    0.160    0.530 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,930,468
Number of Sequences: 63676
Number of extensions: 48802
Number of successful extensions: 392
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of query: 138
length of database: 12,639,632
effective HSP length: 87
effective length of query: 51
effective length of database: 7,099,820
effective search space: 362090820
effective search space used: 362090820
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 54 (25.4 bits)