BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148485.1 - phase: 0
(55 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227657 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein ... 110 2e-25
TC227656 homologue to UP|Q9FNT1 (Q9FNT1) Expansin, partial (89%) 110 2e-25
TC207122 homologue to UP|Q9FNT1 (Q9FNT1) Expansin, partial (87%) 106 2e-24
TC215587 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, complete 96 5e-21
TC213520 similar to UP|Q8LKJ8 (Q8LKJ8) Alpha-expansin precursor,... 95 7e-21
TC215588 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, complete 93 2e-20
TC226245 homologue to UP|Q9FNT0 (Q9FNT0) Expansin, partial (92%) 92 4e-20
TC220235 similar to UP|Q6T5H5 (Q6T5H5) Alpha-expansin 3, partial... 91 1e-19
TC226248 homologue to UP|Q84L79 (Q84L79) Expansin precursor, par... 91 2e-19
TC226247 similar to UP|Q9FNT0 (Q9FNT0) Expansin, partial (93%) 90 2e-19
TC206527 homologue to UP|Q84L80 (Q84L80) Expansin precursor, par... 87 2e-18
TC226244 similar to UP|Q9FNT0 (Q9FNT0) Expansin, partial (97%) 83 3e-17
TC230075 similar to UP|Q6T5H6 (Q6T5H6) Alpha-expansin 2, partial... 82 4e-17
TC219719 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (97%) 79 6e-16
TC225353 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (22%) 79 6e-16
TC216737 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (97%) 79 6e-16
TC225350 similar to UP|Q84UK4 (Q84UK4) Expansin, partial (95%) 78 8e-16
TC225355 homologue to UP|Q6T5H7 (Q6T5H7) Alpha-expansin 1, parti... 75 5e-15
CD415822 similar to SP|Q9M2S9|EX16_ Alpha-expansin 16 precursor ... 75 7e-15
TC206297 UP|Q8GZD3 (Q8GZD3) Expansin, complete 74 1e-14
>TC227657 UP|CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII
type I, chloroplast precursor (CAB) (LHCP) (Fragment),
partial (33%)
Length = 1014
Score = 110 bits (275), Expect = 2e-25
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 55
MSRNWGQNWQSNSYLNGQSLSFVVTT NGHS+VS+NVAP WSFGQTYTGRQF Y
Sbjct: 68 MSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY 232
>TC227656 homologue to UP|Q9FNT1 (Q9FNT1) Expansin, partial (89%)
Length = 1518
Score = 110 bits (275), Expect = 2e-25
Identities = 49/55 (89%), Positives = 51/55 (92%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 55
MSRNWGQNWQSNSYLNGQSLSFVVTT NGHS+VS+NVAP WSFGQTYTGRQF Y
Sbjct: 672 MSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY 836
>TC207122 homologue to UP|Q9FNT1 (Q9FNT1) Expansin, partial (87%)
Length = 1348
Score = 106 bits (265), Expect = 2e-24
Identities = 46/55 (83%), Positives = 51/55 (92%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 55
MSRNWGQNWQSNSYLNGQSLSF+VTT +G S++S+N APPSWSFGQTYTGRQF Y
Sbjct: 652 MSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGRQFRY 816
>TC215587 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, complete
Length = 1394
Score = 95.5 bits (236), Expect = 5e-21
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+YLNGQSLSF VTT +G + VS+NVAP WSFGQTYTG QF
Sbjct: 636 MSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTAVSYNVAPAGWSFGQTYTGAQF 794
>TC213520 similar to UP|Q8LKJ8 (Q8LKJ8) Alpha-expansin precursor, partial
(49%)
Length = 733
Score = 95.1 bits (235), Expect = 7e-21
Identities = 42/53 (79%), Positives = 47/53 (88%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+YLNGQSLSF VTT G ++VS NVAP SWSFGQT+TG+QF
Sbjct: 207 MSRNWGQNWQSNTYLNGQSLSFKVTTSEGRTLVSNNVAPDSWSFGQTFTGKQF 365
>TC215588 homologue to UP|Q8L5G5 (Q8L5G5) Alpha-expansin 3, complete
Length = 1539
Score = 93.2 bits (230), Expect = 2e-20
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+YL+GQSLSF VTT +G +IVS NVAP WSFGQTYTG QF
Sbjct: 623 MSRNWGQNWQSNNYLDGQSLSFKVTTSDGRTIVSNNVAPSGWSFGQTYTGAQF 781
>TC226245 homologue to UP|Q9FNT0 (Q9FNT0) Expansin, partial (92%)
Length = 1220
Score = 92.4 bits (228), Expect = 4e-20
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQSLSF VTT +G ++ SFNVAP +W FGQT+ G QF
Sbjct: 666 MSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSFNVAPANWQFGQTFQGGQF 824
>TC220235 similar to UP|Q6T5H5 (Q6T5H5) Alpha-expansin 3, partial (27%)
Length = 674
Score = 90.9 bits (224), Expect = 1e-19
Identities = 39/54 (72%), Positives = 46/54 (84%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFL 54
M+RNWGQNWQSN+YLNGQSLSF VT +G ++VS NVAP SWSFGQT+ G QF+
Sbjct: 47 MTRNWGQNWQSNAYLNGQSLSFKVTASDGRTVVSNNVAPSSWSFGQTFNGHQFI 208
>TC226248 homologue to UP|Q84L79 (Q84L79) Expansin precursor, partial (33%)
Length = 741
Score = 90.5 bits (223), Expect = 2e-19
Identities = 39/53 (73%), Positives = 44/53 (82%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQSLSF VT +G ++ SFNVAP +W FGQT+ G QF
Sbjct: 94 MSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPSNWQFGQTFQGGQF 252
>TC226247 similar to UP|Q9FNT0 (Q9FNT0) Expansin, partial (93%)
Length = 1376
Score = 90.1 bits (222), Expect = 2e-19
Identities = 39/53 (73%), Positives = 43/53 (80%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQSLSF VT +G ++ SFNVAP W FGQT+ G QF
Sbjct: 657 MSRNWGQNWQSNSYLNGQSLSFQVTASDGRTVTSFNVAPSDWQFGQTFQGGQF 815
>TC206527 homologue to UP|Q84L80 (Q84L80) Expansin precursor, partial (96%)
Length = 1150
Score = 87.0 bits (214), Expect = 2e-18
Identities = 37/53 (69%), Positives = 43/53 (80%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSNSYLNGQSLSF VTT +G ++ S N+ P +W FGQT+ G QF
Sbjct: 665 MSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTLTSNNIVPANWQFGQTFEGAQF 823
>TC226244 similar to UP|Q9FNT0 (Q9FNT0) Expansin, partial (97%)
Length = 821
Score = 82.8 bits (203), Expect = 3e-17
Identities = 36/47 (76%), Positives = 40/47 (84%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQT 47
MSRNWGQNWQSNSYLNGQSLS VTT +G ++ SFNVAP +W FGQT
Sbjct: 681 MSRNWGQNWQSNSYLNGQSLSLQVTTSDGRTVTSFNVAPVNWRFGQT 821
>TC230075 similar to UP|Q6T5H6 (Q6T5H6) Alpha-expansin 2, partial (54%)
Length = 638
Score = 82.4 bits (202), Expect = 4e-17
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
M+RNWGQNWQS +Y GQSLSF+VTT +G S+VS NV P W FGQT+ G QF
Sbjct: 373 MTRNWGQNWQSKTYFVGQSLSFIVTTSDGRSVVSSNVVPAGWKFGQTFQGGQF 531
>TC219719 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (97%)
Length = 1007
Score = 78.6 bits (192), Expect = 6e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +2
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + + S+NVAPP+W FGQT+TG+ F
Sbjct: 653 MSRNWGQNWQSNAVLVGQALSFRVTGSDQRTSTSWNVAPPNWQFGQTFTGKNF 811
>TC225353 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (22%)
Length = 617
Score = 78.6 bits (192), Expect = 6e-16
Identities = 33/53 (62%), Positives = 42/53 (78%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + + S+N+APP+W FGQT+TG+ F
Sbjct: 7 MSRNWGQNWQSNAVLVGQALSFRVTGSDRRTATSWNIAPPNWQFGQTFTGKNF 165
>TC216737 homologue to UP|Q8GZD2 (Q8GZD2) Expansin, partial (97%)
Length = 1296
Score = 78.6 bits (192), Expect = 6e-16
Identities = 34/53 (64%), Positives = 42/53 (79%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + + S+NVAPP+W FGQT+TG+ F
Sbjct: 655 MSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNVAPPNWQFGQTFTGKNF 813
>TC225350 similar to UP|Q84UK4 (Q84UK4) Expansin, partial (95%)
Length = 1184
Score = 78.2 bits (191), Expect = 8e-16
Identities = 33/53 (62%), Positives = 42/53 (78%)
Frame = +3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + + S+N+APP+W FGQT+TG+ F
Sbjct: 633 MSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNF 791
>TC225355 homologue to UP|Q6T5H7 (Q6T5H7) Alpha-expansin 1, partial (90%)
Length = 977
Score = 75.5 bits (184), Expect = 5e-15
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + S S+N+ P +W FGQT+TG+ F
Sbjct: 562 MSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIVPSNWQFGQTFTGKNF 720
>CD415822 similar to SP|Q9M2S9|EX16_ Alpha-expansin 16 precursor (At-EXP16)
(AtEx16) (Ath-ExpAlpha-1.7). [Mouse-ear cress], partial
(26%)
Length = 611
Score = 75.1 bits (183), Expect = 7e-15
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = -3
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQF 53
MSRNWGQNWQSN+ L GQ+LSF VT + + S+NVAP W FGQT+TG+ F
Sbjct: 567 MSRNWGQNWQSNANLVGQALSFRVTXSDRRTSTSWNVAPSHWKFGQTFTGKNF 409
>TC206297 UP|Q8GZD3 (Q8GZD3) Expansin, complete
Length = 1262
Score = 74.3 bits (181), Expect = 1e-14
Identities = 32/49 (65%), Positives = 40/49 (81%)
Frame = +1
Query: 1 MSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYT 49
MSRNWG NWQSN+YLNGQSLSF VTT +G + V ++ P SW+FGQT++
Sbjct: 823 MSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQDIVPASWTFGQTFS 969
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.130 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,284,184
Number of Sequences: 63676
Number of extensions: 33284
Number of successful extensions: 197
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of query: 55
length of database: 12,639,632
effective HSP length: 31
effective length of query: 24
effective length of database: 10,665,676
effective search space: 255976224
effective search space used: 255976224
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148485.1