BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148484.2 - phase: 0
(192 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI974689 45 2e-05
TC232330 UP|Q6ILA4 (Q6ILA4) HDC09939, partial (5%) 45 2e-05
TC206833 homologue to UP|Q6PDS7 (Q6PDS7) Hist1h4h protein (Fragm... 45 2e-05
TC211538 44 4e-05
TC222789 44 6e-05
CO979823 42 1e-04
TC231841 40 9e-04
TC212779 39 0.001
TC223322 37 0.004
TC213061 37 0.004
AW423846 37 0.006
BE657787 37 0.007
TC221865 36 0.010
TC222557 36 0.010
BG881873 36 0.013
TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%) 35 0.016
TC211809 35 0.021
CD413613 35 0.021
TC234424 34 0.036
AW595917 34 0.048
>BI974689
Length = 409
Score = 45.4 bits (106), Expect = 2e-05
Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 1/75 (1%)
Frame = -3
Query: 6 FACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDMLTTKQRV-VFAATVWSLWKHR 64
F C + VW SGLW + N + +F L+D L Q A + ++W+ +
Sbjct: 236 FGCEHVVSVWMASGLWPKIQQQVHNAEVIQQLIFPLMDALNLDQDYNK*AIILRTIWRRQ 57
Query: 65 NLKVWEDVTEVAAVV 79
N KVWEDV E A V+
Sbjct: 56 NEKVWEDV-ETAPVM 15
>TC232330 UP|Q6ILA4 (Q6ILA4) HDC09939, partial (5%)
Length = 434
Score = 45.1 bits (105), Expect = 2e-05
Identities = 21/62 (33%), Positives = 33/62 (52%)
Frame = +2
Query: 129 WQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFVLAKMTSFPCLHQVTVGEAMGLF 188
W KP +G K ++DA+ FN+ G+GI I ++G FV K + + +A+GL
Sbjct: 38 WLKPPTGSLKLSIDAMLFKEFNKFGVGIFIRGDQGTFVSVKTLLLDGIPEPGEAKAIGLL 217
Query: 189 EA 190
A
Sbjct: 218 HA 223
>TC206833 homologue to UP|Q6PDS7 (Q6PDS7) Hist1h4h protein (Fragment),
complete
Length = 1119
Score = 45.1 bits (105), Expect = 2e-05
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = -3
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAA---NSNDDS--NIGTVFALLDMLTTKQRVVFAATV 57
HLFF CS + VW S W+++ A NS +IG + + + +V + A
Sbjct: 430 HLFFQCSRILPVWWESLNWTNIVGAFPLNSKQHFLYHIGGLEG--GVRANRWKVWWLALT 257
Query: 58 WSLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
W++WKHRN ++ + T A V+D A ++ W
Sbjct: 256 WTIWKHRNNVIFSNATFDANKVLDDALFLLWTW 158
>TC211538
Length = 987
Score = 44.3 bits (103), Expect = 4e-05
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +2
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSN--IGTVFALLD-MLTTKQRVVFAATVWS 59
HLFF CS I VW S W ++S N + ++ + + M +++ + + A W+
Sbjct: 605 HLFFQCSKIIPVWWESLSWVNLSGVFPNHPRQHFLQHIYGVTEGMRSSRWKWWWLALTWT 784
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
+WKHRN ++ + T A ++D A ++ W
Sbjct: 785 IWKHRNDIIFSNGTFNANRILDDAVFLLWTW 877
>TC222789
Length = 954
Score = 43.5 bits (101), Expect = 6e-05
Identities = 25/91 (27%), Positives = 44/91 (47%), Gaps = 3/91 (3%)
Frame = +2
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALL---DMLTTKQRVVFAATVWS 59
HLFF CS I +W S W ++S A D L+ + TT+ + + A W+
Sbjct: 515 HLFFHCSKIIPIWWESLSWVNISGALPKDPRQHFLQHDLIMAGGIRTTRWKCWWLAVTWT 694
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
+W+ RN ++ + + A ++D A ++ W
Sbjct: 695 IWQQRNKIIFFNDSFDANKLIDEAAFLLWTW 787
>CO979823
Length = 853
Score = 42.4 bits (98), Expect = 1e-04
Identities = 27/94 (28%), Positives = 47/94 (49%), Gaps = 5/94 (5%)
Frame = -2
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAANSNDDSN----IGTVFALLDMLTTKQ-RVVFAAT 56
AHLFF C+ + +W S W ++ A GT A D L +K+ + + A
Sbjct: 441 AHLFFNCTKTLPLWWESMSWVNLKTAMPQTPRQHFLQYGTDIA--DGLKSKRWKCWWIAL 268
Query: 57 VWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
W++W+HRN V+++ T V++ A +++ W
Sbjct: 267 TWTIWQHRNKVVFQNATFHGNKVLEDALLLLWSW 166
>TC231841
Length = 791
Score = 39.7 bits (91), Expect = 9e-04
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +3
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAANSNDDSN--IGTVFALL-DMLTTKQRVVFAATVW 58
AHLFF CS VW S W ++ N + ++ + M ++ + + A W
Sbjct: 324 AHLFFHCSRIAPVWWESLSWVNLLGVFPNHPRQHFLQHIYGVTAGMRASRWKWWWLALTW 503
Query: 59 SLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
++WK RN ++ + T A ++D A +I W
Sbjct: 504 TIWKQRNNMIFSNGTFNANKILDEAIFLIWTW 599
>TC212779
Length = 617
Score = 38.9 bits (89), Expect = 0.001
Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 1/60 (1%)
Frame = +1
Query: 108 PPTQLLSNSAEVNSSDDGLVLWQKPTSGRYKCNVDAVFSSNFNRT-GIGICIHDEEGAFV 166
P +++ SAE+ S V+WQ P + KCNV+ VF + ++ G G+C+ DE+G V
Sbjct: 220 PDSKVYVCSAELVIS----VVWQPPPTSYLKCNVNVVFFNLQHKIGGFGMCLRDEKGVLV 387
>TC223322
Length = 641
Score = 37.4 bits (85), Expect = 0.004
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 37 TVFALLDMLTTKQRVVFAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQ 91
T +L L+ ++V F+ +W LW RN K E+V + + AR I +WQ
Sbjct: 3 TRLKILQSLSPPEQVEFSTILWCLWHRRNEKASENVENPPLLSIHLARENIMQWQ 167
>TC213061
Length = 823
Score = 37.4 bits (85), Expect = 0.004
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +2
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAA-----NSNDDSNIGTVFALLDMLTTKQRVVFAAT 56
+HLFF CS + +W S W + A + + V+ L + + + A
Sbjct: 389 SHLFFHCSKILPIWWESLSWVKLVGAFPHHPRHHFHQHSHEVYQGLQ--GNRWKWWWLAL 562
Query: 57 VWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
W++WKHRN ++ + T A V+D A +I W
Sbjct: 563 TWTIWKHRNDIIFSNATFNAHKVMDDAVFLIWTW 664
>AW423846
Length = 385
Score = 37.0 bits (84), Expect = 0.006
Identities = 22/74 (29%), Positives = 39/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAANSNDDSNIGTVFALL----DMLTTKQRVVFAATV 57
AHLFF CS + +W S W++ +A ++ ++ + +L D K + + +
Sbjct: 147 AHLFFTCSKIMPLWWASLSWTNTTAP-FPENPHMHFLQQVLRNGKDTSYQKWQCWWTSLT 323
Query: 58 WSLWKHRNLKVWED 71
WS+W+HRN V E+
Sbjct: 324 WSIWQHRNKIVXEE 365
>BE657787
Length = 789
Score = 36.6 bits (83), Expect = 0.007
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = -1
Query: 3 HLFFACSFAIQVWRLSGLWSD-VSAANSNDDSNIGTVFALLD--MLTTKQRVVFAATVWS 59
H CS W S W++ V A N + L+ + + +V + A W+
Sbjct: 759 HXXXQCSRXXXXWWESLNWTNIVGAFPLNSKQHXXXXIGGLEGGVRANRWKVWWLALTWT 580
Query: 60 LWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
+WKHRN ++ + T A V+D A ++ W
Sbjct: 579 IWKHRNNVIFSNATFDANKVLDDALFLLWTW 487
>TC221865
Length = 1045
Score = 36.2 bits (82), Expect = 0.010
Identities = 22/92 (23%), Positives = 46/92 (49%), Gaps = 3/92 (3%)
Frame = -3
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAANSNDDSN--IGTVFALLDMLTTKQ-RVVFAATVW 58
+HLFF+C+ VW S W + S A S + + + F LL + + + + A +
Sbjct: 407 SHLFFSCTKTQPVWWESLSWINTSGAFSANPRHHFLQHSFGLLGLKQYNR*KCWWVALTF 228
Query: 59 SLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
++W+HRN ++ + + +++ A ++ W
Sbjct: 227 TIWQHRNRTIFSNEPFNGSKMMEDAMFLVWSW 132
>TC222557
Length = 1002
Score = 36.2 bits (82), Expect = 0.010
Identities = 22/92 (23%), Positives = 41/92 (43%), Gaps = 3/92 (3%)
Frame = +1
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAANS---NDDSNIGTVFALLDMLTTKQRVVFAATVW 58
+HLFF C + +W S W+ S + T+ + L + + + A W
Sbjct: 589 SHLFFNCPRILPLWWESLAWTKTVGVFSPIPRQNYMQHTLISKGKHLQARWKCWWVALTW 768
Query: 59 SLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
S+W+HRN V+ + + ++D A ++ W
Sbjct: 769 SIWRHRNRIVFLNKAFNGSKLMDDAIFLVWSW 864
>BG881873
Length = 415
Score = 35.8 bits (81), Expect = 0.013
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 10 FAIQVWRLSGLWSDVSAANSNDDSNIGTVFALLDMLTTKQRVVFAATVWSLWKHRNLKVW 69
FA W+ LW V + +S +F + +QR + +WSL K RN+K+W
Sbjct: 121 FAHSCWKEVNLWHKVDQMLNGVESLKDLIFKCTRAFSDQQR*LLFMILWSLRKSRNVKLW 300
Query: 70 EDVTE 74
+ +E
Sbjct: 301 GNNSE 315
>TC210600 similar to UP|Q51534 (Q51534) PilW protein, partial (7%)
Length = 1093
Score = 35.4 bits (80), Expect = 0.016
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Frame = +3
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAAN---------SNDDSNIGTVFALLDMLTTKQRVV 52
AHLFF C+ + +W + W + A +D+S+ V A + +
Sbjct: 612 AHLFFPCTKTLPLWWETQSWINSLGAFPHNPKDHFLQHDNSSADGVRA------RRWKCW 773
Query: 53 FAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
+ A W +WKHRN V+ + + + V+D A + W
Sbjct: 774 WVALTWVIWKHRNGVVFHNHSFDGSKVMDDAIFLFWSW 887
>TC211809
Length = 895
Score = 35.0 bits (79), Expect = 0.021
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = +2
Query: 2 AHLFFACSFAIQVWRLSGLWSDVSAAN---------SNDDSNIGTVFALLDMLTTKQRVV 52
AHLFF C+ +W + W + A +D+ + G V A + + +
Sbjct: 431 AHLFFHCTKTEXLWWETQSWVNSLGAFPHNPKDHFLQHDNRSAGGVXA------RRWKCL 592
Query: 53 FAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEW 90
+ A W +WKHRN V+ + + + V++ A ++ W
Sbjct: 593 WVALTWVIWKHRNGVVFHNHSFDGSKVMEDAILLTWSW 706
>CD413613
Length = 623
Score = 35.0 bits (79), Expect = 0.021
Identities = 14/38 (36%), Positives = 21/38 (54%)
Frame = -1
Query: 129 WQKPTSGRYKCNVDAVFSSNFNRTGIGICIHDEEGAFV 166
W +P+ KCN+DA N+ G+G C + +G FV
Sbjct: 482 WSRPSLEFIKCNLDASLFRNYLLHGLGACNRNSQGTFV 369
>TC234424
Length = 579
Score = 34.3 bits (77), Expect = 0.036
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +1
Query: 50 RVVFAATVWSLWKHRNLKVWEDVTEVAAVVVDRARVMITEWQ 91
R ++ VWS+W HRN V+ D + V +++ + + WQ
Sbjct: 58 RFIWCVIVWSIWCHRNDCVFNDFSFVGDKLLEETKYSFSHWQ 183
>AW595917
Length = 404
Score = 33.9 bits (76), Expect = 0.048
Identities = 26/85 (30%), Positives = 36/85 (41%), Gaps = 6/85 (7%)
Frame = +1
Query: 3 HLFFACSFAIQVWRLSGLWSDVSAANSND------DSNIGTVFALLDMLTTKQRVVFAAT 56
HLFF CS + W S W A D N G T+ R + A
Sbjct: 157 HLFFNCSKTLPFWWESLSWVKTVGAFPKDLREHFLQHNSGNTAGTK---ATR*RCWWIAL 327
Query: 57 VWSLWKHRNLKVWEDVTEVAAVVVD 81
++W+HRN V+E+ T A+ V+D
Sbjct: 328 TRTIWQHRNKLVFENQTFNASKVMD 402
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,001,287
Number of Sequences: 63676
Number of extensions: 129231
Number of successful extensions: 802
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of query: 192
length of database: 12,639,632
effective HSP length: 92
effective length of query: 100
effective length of database: 6,781,440
effective search space: 678144000
effective search space used: 678144000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148484.2