BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148483.19 - phase: 0
(230 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219384 55 3e-08
TC229610 weakly similar to UP|O22512 (O22512) Grr1, partial (52%) 54 8e-08
TC226686 homologue to UP|O22512 (O22512) Grr1, complete 47 6e-06
TC214510 46 1e-05
TC214559 46 2e-05
TC217646 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 ... 46 2e-05
BI427115 similar to GP|13605655|gb AT4g15470/dl3775w {Arabidopsi... 45 3e-05
TC211100 similar to GB|AAM91352.1|22137014|AY133522 At5g23340/MK... 44 5e-05
TC214486 43 1e-04
AI855596 similar to GP|30013671|gb Avr9/Cf-9 rapidly elicited pr... 42 2e-04
BQ133915 similar to GP|30013671|gb Avr9/Cf-9 rapidly elicited pr... 41 5e-04
TC209901 weakly similar to UP|Q6RZU4 (Q6RZU4) F-box-like protein... 38 0.004
TC218118 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragm... 38 0.004
TC216301 similar to UP|O22512 (O22512) Grr1, partial (38%) 36 0.017
BE806321 similar to GP|2407790|gb| grr1 {Glycine max}, partial (... 35 0.022
TC214530 35 0.028
BU763861 35 0.037
TC215542 35 0.037
TC215950 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candida... 35 0.037
BM887272 34 0.049
>TC219384
Length = 1313
Score = 54.7 bits (130), Expect = 3e-08
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 13/164 (7%)
Frame = +2
Query: 54 KC--LASLDLLSSNISDELLSSIATERLPLTRLVLQYCI-----GIVQVLGICCNIRHLN 106
KC + LDL + I DE L SI++ L+ L + C+ G+ V C ++ L+
Sbjct: 107 KCHYIEELDLTDNEIDDEGLMSISSCSR-LSSLKIGICLNITDRGLTYVGMHCSKLKELD 283
Query: 107 LSKCSMVKLEMNFEV-----PKLEVLNLSY-TNVDDEALYMISKSCCGLLKLSLENCNDF 160
L + + V ++ P LE++N SY T++ D AL +SK C L L + C
Sbjct: 284 LYRSTGVD-DLGISAIARGCPGLEMINTSYCTSITDRALITLSK-CSNLKTLEIRGCLLV 457
Query: 161 TKKGVNHVVENCTQLRKISLDGCHKVHANIVSSMVSSRPSLRQI 204
T G+ + NC QL ++ + C+ + + + ++ +LRQI
Sbjct: 458 TSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIALAHFSQNLRQI 589
Score = 27.3 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (47%)
Frame = +2
Query: 142 ISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLRKISL 180
IS SC GL L +E+C + + E C + ++ L
Sbjct: 20 ISNSCAGLTSLKMESCTLVPSEAFVLIGEKCHYIEELDL 136
>TC229610 weakly similar to UP|O22512 (O22512) Grr1, partial (52%)
Length = 1428
Score = 53.5 bits (127), Expect = 8e-08
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Frame = +2
Query: 90 IGIVQVLGICCNIRHLNLSKCSMVKLEMNFEVPK----LEVLNLSY-TNVDDEALYMISK 144
+G+ V C ++R L+L S + E ++ K LE L+L + +++ ++ L I++
Sbjct: 179 LGLSAVAHGCPSLRSLSLWNVSTIGDEGVSQIAKRCHILEKLDLCHCSSISNKGLIAIAE 358
Query: 145 SCCGLLKLSLENCNDFTKKGVNHVVENCTQLRKISLDGCHKVHANIVSSMVSSRPSLRQI 204
C L L++E+C + +G+ + CT+L+ ISL C V + VSS+++S +L ++
Sbjct: 359 GCPNLTTLTIESCPNIGNEGLQAIARLCTKLQSISLKDCPLVGDHGVSSLLASASNLSRV 538
Query: 205 TAPPTRTGAFSARKVKYF 222
+ FS + ++
Sbjct: 539 KLQTLKITDFSLAVICHY 592
>TC226686 homologue to UP|O22512 (O22512) Grr1, complete
Length = 2818
Score = 47.4 bits (111), Expect = 6e-06
Identities = 27/108 (25%), Positives = 50/108 (46%)
Frame = +1
Query: 90 IGIVQVLGICCNIRHLNLSKCSMVKLEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGL 149
+G++++ C + L+L KC N+ D+ L ++K+C L
Sbjct: 745 VGLIEIASGCHQLEKLDLCKCP---------------------NISDKTLIAVAKNCPNL 861
Query: 150 LKLSLENCNDFTKKGVNHVVENCTQLRKISLDGCHKVHANIVSSMVSS 197
+LS+E+C + +G+ + C LR IS+ C V V+ ++SS
Sbjct: 862 AELSIESCPNIGNEGL-QAIGKCPNLRSISIKNCSGVGDQGVAGLLSS 1002
Score = 35.4 bits (80), Expect = 0.022
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Frame = +1
Query: 66 ISDELLSSIATERLPLTRLVLQYCIGIVQV--LGICCN----IRHLNLSKCSMVKLEMNF 119
+SD+ L S A + L LQ C I Q+ G+ N ++ L L C +K ++N
Sbjct: 1285 LSDKGLVSFARAAPSVESLQLQECHRITQIGLFGVFFNCGAKLKVLTLISCYGIK-DLNM 1461
Query: 120 EVPKLEVLNLSYT-------NVDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENC 172
E+P + ++ + L ++ K C + + L T G ++E+
Sbjct: 1462 ELPAISPSESIWSLTIRDCPGFGNANLALLGKLCPRIQHVELSGLQGVTDAGFLPLLESS 1641
Query: 173 TQ-LRKISLDGCHKVHANIVSSMVSS 197
L K++L+GC + +V SMV+S
Sbjct: 1642 EAGLVKVNLNGCVNLTDRVVLSMVNS 1719
Score = 31.6 bits (70), Expect = 0.31
Identities = 24/86 (27%), Positives = 43/86 (49%), Gaps = 3/86 (3%)
Frame = +1
Query: 122 PKLEVLNLSYTN--VDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCT-QLRKI 178
P+++ + LS D L ++ S GL+K++L C + T + V +V + L +
Sbjct: 1564 PRIQHVELSGLQGVTDAGFLPLLESSEAGLVKVNLNGCVNLTDRVVLSMVNSHGWTLEVL 1743
Query: 179 SLDGCHKVHANIVSSMVSSRPSLRQI 204
SLDGC +V + ++ S P L +
Sbjct: 1744 SLDGCKRVGDASLMAIAGSCPLLADL 1821
>TC214510
Length = 994
Score = 46.2 bits (108), Expect = 1e-05
Identities = 26/80 (32%), Positives = 40/80 (49%)
Frame = +1
Query: 99 CCNIRHLNLSKCSMVKLEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLENCN 158
C N+ LNLS CS +++ + E PKL L L N+DDEA+ C L L + C
Sbjct: 502 CLNLCFLNLSNCSSLEI-LKLECPKLTSLFLQSCNIDDEAVEAAISKCTMLETLDVRFCP 678
Query: 159 DFTKKGVNHVVENCTQLRKI 178
+ + + C+ L++I
Sbjct: 679 KISSISMGRLRTICSSLKRI 738
>TC214559
Length = 762
Score = 45.8 bits (107), Expect = 2e-05
Identities = 38/140 (27%), Positives = 63/140 (44%), Gaps = 2/140 (1%)
Frame = +1
Query: 41 AYTTSHFISSLSLKCLASLDLLSS-NISDELLSSIA-TERLPLTRLVLQYCIGIVQVLGI 98
++ +H +S + L +L+ + NI + S A RL L L + V V
Sbjct: 61 SHENAHKLSEQPTRLLQNLNCVGCPNIRKVFIPSTAHCSRLLFLNLSLSANLKEVDVA-- 234
Query: 99 CCNIRHLNLSKCSMVKLEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLENCN 158
C N+ LNLS CS +++ + E P+L L L N+D+EA+ C L L + C
Sbjct: 235 CLNLSWLNLSNCSSLEV-LKLECPRLTSLFLQSCNIDEEAVEAAISKCTMLETLDVRFCP 411
Query: 159 DFTKKGVNHVVENCTQLRKI 178
+ + C+ L++I
Sbjct: 412 KICSMSMGRLRAACSSLKRI 471
>TC217646 weakly similar to GB|AAG21976.1|10716947|AF263377 SKP1 interacting
partner 1 {Arabidopsis thaliana;} , partial (79%)
Length = 1285
Score = 45.8 bits (107), Expect = 2e-05
Identities = 38/147 (25%), Positives = 68/147 (45%), Gaps = 5/147 (3%)
Frame = +1
Query: 66 ISDELLSSIATERLPLTRLVLQYCIGI-----VQVLGICCNIRHLNLSKCSMVKLEMNFE 120
++D+ +S IA L L + YC I V + C N++ L + + + +
Sbjct: 466 VTDDSISRIALSCPKLRELDISYCYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHRG 645
Query: 121 VPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLRKISL 180
+ + LN + DDEA I+ S GL +L + + T KG+N + + C L + L
Sbjct: 646 IVPDDYLNACPQDGDDEAA-AIANSMPGLEQLEIR-FSKLTAKGLNSICQGCPNLEFLDL 819
Query: 181 DGCHKVHANIVSSMVSSRPSLRQITAP 207
GC + + +++ SS L++I P
Sbjct: 820 SGCANLTSRDIANASSSLVHLKEIKKP 900
>BI427115 similar to GP|13605655|gb AT4g15470/dl3775w {Arabidopsis thaliana},
partial (22%)
Length = 421
Score = 45.1 bits (105), Expect = 3e-05
Identities = 31/127 (24%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Frame = +2
Query: 66 ISDELLSSIATERLPLTRLVLQYCI----GIVQVLGICCNIRHLNLSKCSMVK----LEM 117
I ++ L ++ LT L +++C G + + C++ +LN+S C + + +
Sbjct: 29 IGNKGLIAVGKHCKSLTDLSIRFCDRVGDGALTAIAEGCSLHYLNVSGCHQIGDAGVIAI 208
Query: 118 NFEVPKLEVLNLSYT-NVDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLR 176
P+L L++S N+ D A+ + + C L ++ L +C T G+ H+V++CT L
Sbjct: 209 ARGCPQLCYLDVSVLQNLGDMAMAELGEHCTLLKEIVLSHCRQITDVGLTHLVKSCTLLE 388
Query: 177 KISLDGC 183
+ C
Sbjct: 389 SCQMVYC 409
>TC211100 similar to GB|AAM91352.1|22137014|AY133522 At5g23340/MKD15_20
{Arabidopsis thaliana;} , partial (61%)
Length = 815
Score = 44.3 bits (103), Expect = 5e-05
Identities = 42/155 (27%), Positives = 65/155 (41%), Gaps = 8/155 (5%)
Frame = +1
Query: 56 LASLDLLSS-------NISDELLSSIATERLPLTRLVLQYCIGIVQVLGICCNIRHLNLS 108
L LDL S ++D L+ IAT L L L C GI G+ HL+L
Sbjct: 262 LVELDLAKSVSRSFYPGVTDSDLAVIATAFTCLKILNLHNCKGITDA-GMKAIGEHLSL- 435
Query: 109 KCSMVKLEMNFEVPKLEVLNLSYTN-VDDEALYMISKSCCGLLKLSLENCNDFTKKGVNH 167
L+ L++SY + D+ L ++K CC L L + C T +
Sbjct: 436 ---------------LQSLDVSYCRKLTDKGLSAVAKGCCDLRILHMAGCRFVTDGVLEA 570
Query: 168 VVENCTQLRKISLDGCHKVHANIVSSMVSSRPSLR 202
+ +NC L ++ L GC + N + ++ S +R
Sbjct: 571 LSKNCGNLEELGLHGCTSITDNGLINLASGCRRIR 675
>TC214486
Length = 1070
Score = 42.7 bits (99), Expect = 1e-04
Identities = 23/80 (28%), Positives = 40/80 (49%)
Frame = +1
Query: 99 CCNIRHLNLSKCSMVKLEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLENCN 158
C N+ LNLS CS +++ + E P+L L L N+++EA+ C L L + C
Sbjct: 601 CLNLSWLNLSNCSSLEV-LKLECPRLTSLFLQSCNINEEAVEAAISKCTMLETLDVRFCP 777
Query: 159 DFTKKGVNHVVENCTQLRKI 178
+ + + C+ L++I
Sbjct: 778 KISSMSMGRLRAACSSLKRI 837
>AI855596 similar to GP|30013671|gb Avr9/Cf-9 rapidly elicited protein 189
{Nicotiana tabacum}, partial (21%)
Length = 415
Score = 42.0 bits (97), Expect = 2e-04
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 93 VQVLGICCNIRHLNLSKCSMVKLEMNFEVPKLEVLNLSYTN-VDDEALYMISKSCCGLLK 151
V L + C+ R +++S ++V + P L L L + D + +K+C GL K
Sbjct: 60 VTKLALKCDRRSVSISDDALVLISQR--CPNLTRLKLRACRALTDAGMEAFAKNCKGLKK 233
Query: 152 LSLENCNDFTKKGVNHVVENCTQLRKISL 180
LS +C F KG+N V++NC L ++S+
Sbjct: 234 LSCGSCT-FGSKGMNAVLDNCAALEELSV 317
>BQ133915 similar to GP|30013671|gb Avr9/Cf-9 rapidly elicited protein 189
{Nicotiana tabacum}, partial (26%)
Length = 429
Score = 40.8 bits (94), Expect = 5e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +1
Query: 93 VQVLGICCNIRHLNLSKCSMVKLEMNFEVPKLEVLNL-SYTNVDDEALYMISKSCCGLLK 151
V L + C+ R +++ ++V + P L L L + + D + +K+C GL K
Sbjct: 79 VTKLALKCDRRSVSIRDDALVLISQR--CPNLTRLKLRACLELTDAGMEAFAKNCKGLKK 252
Query: 152 LSLENCNDFTKKGVNHVVENCTQLRKISL 180
LS +C F KG+N V++NC L ++S+
Sbjct: 253 LSCGSCT-FGSKGMNAVLDNCAALEELSV 336
>TC209901 weakly similar to UP|Q6RZU4 (Q6RZU4) F-box-like protein, partial
(14%)
Length = 1246
Score = 37.7 bits (86), Expect = 0.004
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 149 LLKLSLENCNDFTKKGVNHVVENCTQLRKISLDGCHKVHANIVSSMVSSRPSLRQIT 205
L LSL NC++ + G+ ++ + L+K++LD C KV +S + S PSL I+
Sbjct: 154 LKSLSLSNCSELSDSGLTRLLSYGSNLQKLNLDCCLKVTDYGLSLVASGCPSLMSIS 324
Score = 31.6 bits (70), Expect = 0.31
Identities = 39/186 (20%), Positives = 71/186 (37%), Gaps = 5/186 (2%)
Frame = +1
Query: 3 HCFDITFDGIAKALRERPTLRSLSFSKTNGPVKVRYESAYTTSHFISSLSLKCLASLDLL 62
+C I+ +G+ L++++ S G V +E T +I + S K L
Sbjct: 409 YCSQISDNGLKAITHWCRQLQAINISHCEGLSGVGFERYSKTLAYIEAKSYK-------L 567
Query: 63 SSNISDELLSSIATERLPLTRLVLQYCIGIVQVLGICCNIRHLNLSKCSMVK----LEMN 118
++S E L ++ L + +G ++ LN C V + +
Sbjct: 568 KQERVMGIVSGGGIEYLDVSCLSWSVLGDPLPGIGFASCLKILNFRLCRTVSDTSIVAIA 747
Query: 119 FEVPKLEVLNLSYTN-VDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLRK 177
P LE NL+ + V + + C L +L + C + G+ + E C L
Sbjct: 748 KGCPLLEEWNLALCHEVREPGWRTVGLYCRNLKRLHVNRCRNLCDNGLQALREGCKNLSI 927
Query: 178 ISLDGC 183
+ L+GC
Sbjct: 928 LYLNGC 945
Score = 29.3 bits (64), Expect = 1.6
Identities = 28/114 (24%), Positives = 47/114 (40%), Gaps = 5/114 (4%)
Frame = +1
Query: 5 FDITFDGIAKALRERPTLRSLSFSKTNGPVKVRYESAYTTSHFISSLSLKCLASLDLLSS 64
FDI + + LR L+SLS S + + + L+L C
Sbjct: 103 FDIHTFHLHRLLRRFQHLKSLSLSNCSELSDSGLTRLLSYGSNLQKLNLDCCLK------ 264
Query: 65 NISDELLSSIATERLPLTRLVLQYCIGIVQ-----VLGICCNIRHLNLSKCSMV 113
++D LS +A+ L + L C GI + C +++++NLS CS +
Sbjct: 265 -VTDYGLSLVASGCPSLMSISLYRCPGITDKGLDTLASACLSMKYVNLSYCSQI 423
>TC218118 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragment),
partial (48%)
Length = 955
Score = 37.7 bits (86), Expect = 0.004
Identities = 25/65 (38%), Positives = 32/65 (48%), Gaps = 4/65 (6%)
Frame = +2
Query: 160 FTKKGVNHVVENCTQLRKISLDGCHKVHAN----IVSSMVSSRPSLRQITAPPTRTGAFS 215
F K G NH++ T LRK LD C K N I+ S + + + QIT P T S
Sbjct: 386 F*KLGGNHILNGLTPLRKTRLDWCRKQGCN*SR*IIGS*IKGKGTGIQITPHPLATPKAS 565
Query: 216 ARKVK 220
AR V+
Sbjct: 566 ARVVQ 580
>TC216301 similar to UP|O22512 (O22512) Grr1, partial (38%)
Length = 1688
Score = 35.8 bits (81), Expect = 0.017
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Frame = +3
Query: 66 ISDELLSSIATERLPLTRLVLQYCIGIVQV--LGICCN----IRHLNLSKCSMVKLEMNF 119
+SD L S A L L L+ C I Q+ G+ N ++ ++L C +K ++N
Sbjct: 165 LSDNGLISFAKAASSLESLRLEECHRITQLGFFGVLFNCGAKLKAISLVSCYGIK-DLNL 341
Query: 120 EVPKLE----VLNLSYTNVD---DEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENC 172
+P + + +LS +N + +L ++ K C L + L T G+ ++E+
Sbjct: 342 VLPTVSPCESLRSLSISNCPGFGNASLSVLGKLCPQLQHVELSGLEGVTDAGLLPLLESS 521
Query: 173 TQ-LRKISLDGCHKVHANIVSSMVS 196
L K++L GC + +VSS+ +
Sbjct: 522 EAGLVKVNLSGCTNITDKVVSSLAN 596
Score = 28.1 bits (61), Expect = 3.5
Identities = 17/65 (26%), Positives = 28/65 (42%), Gaps = 1/65 (1%)
Frame = +3
Query: 123 KLEVLNL-SYTNVDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLRKISLD 181
KL+ L + S V D L + K C L L C + G+ + + L + L+
Sbjct: 51 KLKSLTVASCKGVTDIGLEAVGKGCPNLKIAHLHKCAFLSDNGLISFAKAASSLESLRLE 230
Query: 182 GCHKV 186
CH++
Sbjct: 231 ECHRI 245
>BE806321 similar to GP|2407790|gb| grr1 {Glycine max}, partial (19%)
Length = 434
Score = 35.4 bits (80), Expect = 0.022
Identities = 18/57 (31%), Positives = 35/57 (60%), Gaps = 1/57 (1%)
Frame = +2
Query: 142 ISKSCCGLLKLSLENCNDFTKKGVNHVV-ENCTQLRKISLDGCHKVHANIVSSMVSS 197
I+K+C L +LS E+C + +GV ++ + C+ L+ IS+ C V + ++ ++SS
Sbjct: 221 IAKNCQNLTELSFESCPNIGNEGVYELLGKLCSNLKSISIKDCTGVSDHGIAGLLSS 391
>TC214530
Length = 818
Score = 35.0 bits (79), Expect = 0.028
Identities = 42/152 (27%), Positives = 70/152 (45%), Gaps = 12/152 (7%)
Frame = +1
Query: 48 ISSLSLKC--LASLDL-LSSNISDELLSSIATERLPLTRLVLQYC--IGIVQVLGICC-- 100
+S + C LASLD S ++D LS+ + L+L C IG + + C
Sbjct: 181 LSEAFINCPLLASLDASFCSQLTDGCLSATTVSCPLIESLILMSCSSIGSEGLRSLYCLP 360
Query: 101 NIRHLNLSKCSMVKLEMNFE-VPKLEVLNLS----YTNVDDEALYMISKSCCGLLKLSLE 155
N+ L+LS +V ++ F+ +L+VL L T+ E LY + L +L L
Sbjct: 361 NLTVLDLSYTFLVNMQPIFDSCLQLKVLKLQACKYLTDTSLEPLYK-GGALPALQELDL- 534
Query: 156 NCNDFTKKGVNHVVENCTQLRKISLDGCHKVH 187
+ + ++ ++ CT L +SL GC +H
Sbjct: 535 SYGTLCQSAIDELLAYCTNLTHVSLTGCVNMH 630
>BU763861
Length = 463
Score = 34.7 bits (78), Expect = 0.037
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 134 VDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVVENCTQLRKISLDGCHKV 186
+ D A+ I+ SC L+ L LE+C+ T+ + + NC+ L+++ L C V
Sbjct: 42 ISDAAISTIADSCPDLVCLKLESCDMVTENCLYQLGLNCSLLKELDLTDCSGV 200
>TC215542
Length = 1695
Score = 34.7 bits (78), Expect = 0.037
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 6/101 (5%)
Frame = +3
Query: 102 IRHLNLSKCS------MVKLEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLE 155
+ L+LS CS ++ L F + +L ++D A+ I+K C L L L
Sbjct: 342 LARLSLSWCSKNMNNLVLSLVPKFAKLQTLILRQDKPQLEDNAVETIAKCCHELQILDLS 521
Query: 156 NCNDFTKKGVNHVVENCTQLRKISLDGCHKVHANIVSSMVS 196
T + + + C L K+++ GC N ++ + S
Sbjct: 522 KSFKLTDRSLYELALGCRDLTKLNISGCSAFSDNALAYLAS 644
>TC215950 weakly similar to UP|Q8W2C0 (Q8W2C0) Functional candidate
resistance protein KR1, partial (23%)
Length = 1891
Score = 34.7 bits (78), Expect = 0.037
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Frame = +1
Query: 52 SLKCLASLDLLSSNISDELLSSIATERLPLTRLVLQYCIGIV---QVLGICCNIRHLNLS 108
S+ L L +L++ EL S + L L L YC + ++LG NI L+LS
Sbjct: 628 SVGLLGKLKILNAEGCPELKSFPPLKLTSLESLDLSYCSSLESFPEILGKMENITELDLS 807
Query: 109 KCSMVKLEMNF-EVPKLEVLNLSY------TNVDDEALYMISKSC 146
+C + KL +F + +L+ L L + +D +A +IS C
Sbjct: 808 ECPITKLPPSFRNLTRLQELELDHGPESADQLMDFDAATLISNIC 942
>BM887272
Length = 436
Score = 34.3 bits (77), Expect = 0.049
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Frame = +1
Query: 59 LDLLSSNISDELLSSIATERLPLTRLVLQYCIGI-----VQVLGICCNIRHLNLSKCSMV 113
LDL I+++ L+ I + L L+L++C+GI + C +++ LNLSKC +
Sbjct: 4 LDLSYLPITEKCLNHIL-QLEHLEDLILEHCLGIEDHGLATLQASCKSMKMLNLSKCQNI 180
Query: 114 K----LEMNFEVPKLEVLNLSYTNVDDEALYMISKSCCGLLKLSLENCNDFTKKGVNHVV 169
+ LE L LS + + L +S L + L++C TK G+ +
Sbjct: 181 GHIGIASLTSGSQNLEKLILSSSVIVTTDLAKCLQSFSRLQSVKLDSCLG-TKSGLKAIG 357
Query: 170 ENCTQLRKISLDGC 183
L++++L C
Sbjct: 358 NLGASLKELNLSKC 399
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,741,810
Number of Sequences: 63676
Number of extensions: 164132
Number of successful extensions: 1288
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of query: 230
length of database: 12,639,632
effective HSP length: 94
effective length of query: 136
effective length of database: 6,654,088
effective search space: 904955968
effective search space used: 904955968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148483.19