BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148482.4 + phase: 0
(337 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205071 similar to GB|AAL16128.1|16226301|AF428296 AT5g47540/MN... 592 e-170
TC205070 similar to GB|AAL16128.1|16226301|AF428296 AT5g47540/MN... 469 e-133
TC208456 weakly similar to UP|Q8VDZ8 (Q8VDZ8) Cab39 protein, par... 204 5e-53
BF009930 weakly similar to GP|16226301|gb| AT5g47540/MNJ7_13 {Ar... 92 4e-19
AI900026 90 2e-18
BE800578 similar to GP|14190519|gb| AT4g17270/dl4670w {Arabidops... 69 2e-12
TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin... 43 2e-04
TC214331 similar to UP|Q7NLY3 (Q7NLY3) Glr0986 protein, partial ... 32 0.53
TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6... 30 2.0
CO980963 28 5.9
TC207379 28 7.7
>TC205071 similar to GB|AAL16128.1|16226301|AF428296 AT5g47540/MNJ7_13
{Arabidopsis thaliana;} , partial (97%)
Length = 1496
Score = 592 bits (1527), Expect = e-170
Identities = 305/335 (91%), Positives = 321/335 (95%)
Frame = +2
Query: 1 MKGLFKPKPRTPTDIVRQTRDLLLFFDRNTESRDSKREEKQMTELCKNIRELKSILYGNS 60
MKGLFK KPRTP D+VRQTRDLLLF DR+ E+R+SKREEK M+EL KNIRELKSILYGNS
Sbjct: 98 MKGLFKSKPRTPADVVRQTRDLLLFVDRSPETRESKREEK-MSELFKNIRELKSILYGNS 274
Query: 61 ESEPVSEACAQLTQEFFKENTLRLLIKCIPKLNLEARKDATQVVANLQRQPVQSKLIASD 120
ESEPVSEACAQLTQEFFKE+TLRLLIKC+PKLNLEARKDATQVVANLQRQ VQ KLIASD
Sbjct: 275 ESEPVSEACAQLTQEFFKEDTLRLLIKCLPKLNLEARKDATQVVANLQRQQVQFKLIASD 454
Query: 121 YLENNMDLMDILIVGYENTDMALHYGAMLRECIRHQIVAKYVLNSPHMKKFFDYIQLPNF 180
YLE NMDLMDILIVGYEN DMALHYGAMLRECIRHQIVAKYVLNSP MKKFFDYIQLPNF
Sbjct: 455 YLEKNMDLMDILIVGYENQDMALHYGAMLRECIRHQIVAKYVLNSPRMKKFFDYIQLPNF 634
Query: 181 DIAADAAATFKELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITRRLAVKLLGDML 240
DIAADAAATFKEL+TRHKSTVAEFLSKNYEWFFA+YN+KLLESSNYITRR AVKLLGDML
Sbjct: 635 DIAADAAATFKELLTRHKSTVAEFLSKNYEWFFAEYNTKLLESSNYITRRQAVKLLGDML 814
Query: 241 LDRSNSAVMTQYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVSIFVA 300
LDRSNSAVMT+YVSSR+NLRILMNLLRESSKSIQIEAFHVFKLFAANQ+KPADIVSIFVA
Sbjct: 815 LDRSNSAVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQHKPADIVSIFVA 994
Query: 301 NKSKMLRLLDEFKIDKEDEQFEADKAQVMEEIASL 335
NKSKMLRLL++FKIDKEDEQFEADKAQVM EI +L
Sbjct: 995 NKSKMLRLLEDFKIDKEDEQFEADKAQVMREIEAL 1099
>TC205070 similar to GB|AAL16128.1|16226301|AF428296 AT5g47540/MNJ7_13
{Arabidopsis thaliana;} , partial (80%)
Length = 1162
Score = 469 bits (1207), Expect = e-133
Identities = 236/270 (87%), Positives = 257/270 (94%)
Frame = +3
Query: 67 EACAQLTQEFFKENTLRLLIKCIPKLNLEARKDATQVVANLQRQPVQSKLIASDYLENNM 126
EACAQLTQEFF +NTLRLLI+ +PKLNLEARKDATQ+VANLQRQ VQSKLIASDYL+ N+
Sbjct: 3 EACAQLTQEFFADNTLRLLIQYLPKLNLEARKDATQIVANLQRQQVQSKLIASDYLDTNL 182
Query: 127 DLMDILIVGYENTDMALHYGAMLRECIRHQIVAKYVLNSPHMKKFFDYIQLPNFDIAADA 186
DLMD+L+ GYENTDMALHYGAMLRECIRHQIVAKYVL+SPHMKKFFDYIQLPNFDIAADA
Sbjct: 183 DLMDVLVSGYENTDMALHYGAMLRECIRHQIVAKYVLDSPHMKKFFDYIQLPNFDIAADA 362
Query: 187 AATFKELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITRRLAVKLLGDMLLDRSNS 246
AATFKELMTRHKSTVA+FLS YEWFF +YNSKLLESSNYITRR AVKLLGDMLLDR+NS
Sbjct: 363 AATFKELMTRHKSTVADFLSNYYEWFFDEYNSKLLESSNYITRRQAVKLLGDMLLDRTNS 542
Query: 247 AVMTQYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVSIFVANKSKML 306
AVMT+YVSSR+NLRILMNLLRESSKSIQIEAFHVFKLFAANQ KPADI+SIFVAN+SK+L
Sbjct: 543 AVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQKKPADIISIFVANRSKLL 722
Query: 307 RLLDEFKIDKEDEQFEADKAQVMEEIASLE 336
RLL + K DKEDEQFEADKAQV++EIA+LE
Sbjct: 723 RLLGDLKTDKEDEQFEADKAQVIKEIAALE 812
>TC208456 weakly similar to UP|Q8VDZ8 (Q8VDZ8) Cab39 protein, partial (51%)
Length = 825
Score = 204 bits (519), Expect = 5e-53
Identities = 102/215 (47%), Positives = 150/215 (69%), Gaps = 2/215 (0%)
Frame = +2
Query: 123 ENNMDLMDILIVGYENTDMALHYGAMLRECIRHQIVAKYVLNSPHMKKFFDYIQLPNFDI 182
E +++L+D L+V Y+N D+AL G MLRECI+ +A+Y+L S FF +++LPNFD+
Sbjct: 2 EQHIELLDFLVVCYDNKDIALSCGIMLRECIKFPSLARYILESASFVLFFKFVELPNFDV 181
Query: 183 AADAAATFKELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITRRLAVKLLGDMLLD 242
A+DA +TFK+L+T+H + V+EFL+ +Y+ FF D KLL S NY+TRR ++KLL + LL+
Sbjct: 182 ASDAFSTFKDLLTKHVNVVSEFLTAHYDEFF-DLYEKLLTSPNYVTRRQSLKLLSEFLLE 358
Query: 243 RSNSAVMTQYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVSIFVANK 302
NS +M QY+ L+++M LLR+SSK+IQ+ AFH+FK+F AN NKP ++ I N+
Sbjct: 359 SPNSQIMKQYILEVRYLKVMMTLLRDSSKNIQLSAFHIFKVFVANPNKPREVKIILSKNQ 538
Query: 303 SKMLRLLDEFKIDK--EDEQFEADKAQVMEEIASL 335
K+L LL K EDEQFE +K +++EI L
Sbjct: 539 EKLLDLLHNLSPGKGSEDEQFEEEKEFIIKEIERL 643
>BF009930 weakly similar to GP|16226301|gb| AT5g47540/MNJ7_13 {Arabidopsis
thaliana}, partial (17%)
Length = 190
Score = 91.7 bits (226), Expect = 4e-19
Identities = 42/62 (67%), Positives = 55/62 (87%)
Frame = +2
Query: 274 QIEAFHVFKLFAANQNKPADIVSIFVANKSKMLRLLDEFKIDKEDEQFEADKAQVMEEIA 333
QIEAFHVFKLF NQ+KP +IV++F+ NKSK+L+LL +FKIDKEDEQFEA+K+QV+ +I
Sbjct: 5 QIEAFHVFKLFTTNQHKPPNIVNVFITNKSKILKLLKDFKIDKEDEQFEANKSQVIRKIK 184
Query: 334 SL 335
+L
Sbjct: 185 TL 190
>AI900026
Length = 400
Score = 89.7 bits (221), Expect = 2e-18
Identities = 46/70 (65%), Positives = 54/70 (76%)
Frame = +1
Query: 1 MKGLFKPKPRTPTDIVRQTRDLLLFFDRNTESRDSKREEKQMTELCKNIRELKSILYGNS 60
MK LFKPKPRTP+DIV+QTRDLLL R + R++ M +L KN+R+LKSILYGNS
Sbjct: 214 MKSLFKPKPRTPSDIVKQTRDLLL--------RLTSRDDDNMPDLTKNLRDLKSILYGNS 369
Query: 61 ESEPVSEACA 70
ESEPV EACA
Sbjct: 370 ESEPVPEACA 399
>BE800578 similar to GP|14190519|gb| AT4g17270/dl4670w {Arabidopsis
thaliana}, partial (15%)
Length = 405
Score = 69.3 bits (168), Expect = 2e-12
Identities = 32/40 (80%), Positives = 36/40 (90%)
Frame = +1
Query: 1 MKGLFKPKPRTPTDIVRQTRDLLLFFDRNTESRDSKREEK 40
MKGLFK KPRTP D+VRQTRDLLLF DR+ E+R+SKREEK
Sbjct: 229 MKGLFKSKPRTPADVVRQTRDLLLFVDRSPETRESKREEK 348
Score = 40.4 bits (93), Expect = 0.001
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 136 YENTDMALHYGAMLRECI 153
YEN DMALHYGAMLRECI
Sbjct: 350 YENQDMALHYGAMLRECI 403
>TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin response
factor ARF17 {Arabidopsis thaliana;} , partial (17%)
Length = 958
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/89 (32%), Positives = 45/89 (49%)
Frame = +3
Query: 191 KELMTRHKSTVAEFLSKNYEWFFADYNSKLLESSNYITRRLAVKLLGDMLLDRSNSAVMT 250
+EL+TRHKS VAEFLSKNYEW D N + + + + +K++ S +
Sbjct: 696 EELLTRHKSIVAEFLSKNYEW---DMNQQKIGTIEMVEGLYRLKMIS------FKSKYKS 848
Query: 251 QYVSSRENLRILMNLLRESSKSIQIEAFH 279
+V+S + N+ S I I+ +H
Sbjct: 849 DFVNSS-----IFNVSAFSCNKIPIDLWH 920
>TC214331 similar to UP|Q7NLY3 (Q7NLY3) Glr0986 protein, partial (14%)
Length = 1253
Score = 31.6 bits (70), Expect = 0.53
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Frame = +1
Query: 7 PKPRTPTDIVRQTRDLLLFFDRNTESRDSKREEKQMTELCKNIRELKSI-LYGNSESEPV 65
P P+ ++ QTR LL + ++N S+ + Q+ +C R +K L+GNS P
Sbjct: 514 PPPKGVQGVIDQTRGLLDYVEQNC-SKPVYTPQAQVKYVCIAGRYIKGARLFGNSNPNPD 690
Query: 66 SEACAQLTQE 75
E AQL +
Sbjct: 691 IEGEAQLVSD 720
>TC234499 weakly similar to UP|Q94A53 (Q94A53) At1g12830/F13K23_6, partial
(26%)
Length = 894
Score = 29.6 bits (65), Expect = 2.0
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -2
Query: 18 QTRDLLLFFDRNTESRDSKREEKQMTELCKNIRELKSILYGNSESEPVSEACAQLTQEFF 77
+T+++ FF+ N + K +T LC+N L S+ +S P +EA A E
Sbjct: 707 KTKNISFFFEVNNRTNPFLFPSKTLTNLCRNQASLSSLSL-SSSLMPAAEAAAAAFPESP 531
Query: 78 KENTLRLLIK 87
T L ++
Sbjct: 530 SMRTPELAVR 501
>CO980963
Length = 728
Score = 28.1 bits (61), Expect = 5.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +1
Query: 235 LLGDMLLDRSNSAVMTQYVSSRENLRILMNLLRESSKSIQIEAFHVFKLF 284
LL DML S + Y SR+N+R + ++RE+ + FH LF
Sbjct: 1 LLPDMLFSLKYSRITFSYYISRKNIRRIKEIMRET----YVLIFHFRVLF 138
>TC207379
Length = 1119
Score = 27.7 bits (60), Expect = 7.7
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +1
Query: 61 ESEPVSEACAQLTQEFFKENTLRLLIKCIPKLNLEARKDATQVVANLQRQPVQSKLIASD 120
ESE + E+C+ L +E K TL L K K + D T A L P +S +
Sbjct: 685 ESESIKESCSSLVEE--KNETLTLPDKEDSKTEI----DETMNDAELNENPEKSDAVLDG 846
Query: 121 YLENNMDLMDILIVGYENTDMALHY 145
N+M I +V ++ + H+
Sbjct: 847 --*NSMSSRQIFVVPCNHSSLNQHF 915
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.133 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,813,390
Number of Sequences: 63676
Number of extensions: 115715
Number of successful extensions: 542
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of query: 337
length of database: 12,639,632
effective HSP length: 98
effective length of query: 239
effective length of database: 6,399,384
effective search space: 1529452776
effective search space used: 1529452776
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC148482.4