TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148470.10 - phase: 0 /pseudo
         (598 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922015                                                               82  5e-16
BQ273711                                                               82  7e-16
TC234828                                                               55  1e-07
CO980191                                                               42  0.001
BM086635                                                               33  0.47
BU927201                                                               32  0.61
BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata},...    30  4.0
BM731380                                                               29  5.2
NP595172 polyprotein [Glycine max]                                     29  5.2
BF071504                                                               29  6.8
TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-pr...    28  8.9
TC213108                                                               28  8.9

>CF922015 
          Length = 172

 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 35/51 (68%), Positives = 43/51 (83%)
 Frame = -3

Query: 1   FLRNHPPTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEA 51
           F RN+PPTFKG YDP+GA+ WL+E+E IFRVM+C + QKV F THMLA+EA
Sbjct: 155 FQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3


>BQ273711 
          Length = 409

 Score = 82.0 bits (201), Expect = 7e-16
 Identities = 36/82 (43%), Positives = 45/82 (53%)
 Frame = -2

Query: 1   FLRNHPPTFKGRYDPDGAQKWLKEVESIFRVMQCSEVQKVRFGTHMLAEEANDWWVSLLP 60
           F +NHPP F G YDP+GA+ WL E E IF  M C E  KV + T ML  EA +WW  + P
Sbjct: 246 FRKNHPPKFSGDYDPEGARLWLAETEKIFEAMGCLEEHKVLYATFMLQGEAENWWKFVKP 67

Query: 61  ILEQDDAAMTWAVFRREFLNRY 82
                   + W  F+ +FL  Y
Sbjct: 66  SFVAPGGVIPWNAFKDKFLENY 1


>TC234828 
          Length = 857

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 34/84 (40%), Positives = 43/84 (50%)
 Frame = +1

Query: 424 CRWRIQL*LIDCQL*MNFQKFFLMRFLMCHQRGRLNFQLILFPERSRCRWHLTVCRRPS* 483
           C W+  L L+  +   NFQKFF M F+ CH R + N  L     R +CR  L  C R +*
Sbjct: 598 CMWKRTLKLVVYRWCQNFQKFFRMMFVNCHLREKWNSLLTWCLGRIQCRLRLIECLRWN* 777

Query: 484 LN*RNSWRTCLIRNL*DQVFHLGE 507
             *R+ +RT    NL  Q  H GE
Sbjct: 778 QR*RHKYRTF*ANNLFVQAHHRGE 849


>CO980191 
          Length = 802

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/81 (30%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
 Frame = +1

Query: 40  VRFGTHM------LAEEANDWWVSLLPILEQDDAAMTWAVFRREFLNRYVPEDVRGQKEI 93
           + F  HM      +  E N + + L       +  +T  VF+  FL +++ ED+   K+ 
Sbjct: 259 IAFTKHMNLFVSHIYREGNTYEIKLASHGTT*NRVIT*EVFKEIFLEKHLHEDI*NHKKT 438

Query: 94  EFLELKQGDMSVTEYAAEFSK 114
           EFLELK G+M V  Y   F +
Sbjct: 439 EFLELKHGNMIVANYLVNFDE 501


>BM086635 
          Length = 428

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = +3

Query: 286 VSLIVLL*LLL*ILVLLIVSLLLIVHISW 314
           V+L++LL LLL +L+LL++ LLL+VH  W
Sbjct: 156 VALLLLLLLLLLLLLLLLLLLLLLVHSVW 242


>BU927201 
          Length = 444

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 26/63 (41%), Positives = 34/63 (53%)
 Frame = -2

Query: 249 GILAHSARSLRRFGQVARYLH*LVRRL*IRTDLSEVLVSLIVLL*LLL*ILVLLIVSLLL 308
           G L H  R +RR  + A  L    RRL          V  ++LL LLL +LVLL++ LL+
Sbjct: 242 GALPHHRRRMRRRRRSAVELR--TRRL----------VERLLLLLLLLLVLVLLVLMLLI 99

Query: 309 IVH 311
           IVH
Sbjct: 98  IVH 90


>BE807600 similar to GP|24461867|gb CTV.22 {Poncirus trifoliata}, partial
           (4%)
          Length = 414

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/57 (38%), Positives = 38/57 (66%)
 Frame = -2

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLLLFV 341
           ++ L++LL LLL +L+LL++ LLL +    + L+L+     L+ + LR+ *LLLL +
Sbjct: 407 ILLLLLLLLLLLLLLLLLLLLLLLELLPQKLMLHLL-----LVDILLRIL*LLLLLL 252


>BM731380 
          Length = 433

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 23/57 (40%), Positives = 36/57 (62%)
 Frame = +2

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLLLFV 341
           L+ L++LL +L+  L L++V LLL++ +  V L L+ +   LL   L +Q LLLL V
Sbjct: 236 LLLLLLLLLVLVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLV 406



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/55 (34%), Positives = 36/55 (64%)
 Frame = +2

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLL 338
           +++ L ++L LLL +L+LL+V LLL+  +  + ++L+ ++  LL L L +   LL
Sbjct: 266 LVLGLYLVLVLLLLVLLLLLVLLLLLQVLLLLLVFLLLLQVLLLLLVLLLAQFLL 430


>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 560  I*GQVTIRLR*RMRICRRRPLGHDMVIMNKR*CLSVLLI 598
            I*GQ TI+    +RI R+  L H M IMN  *C  VLL+
Sbjct: 2060 I*GQDTIKFWYSLRIERKLLLEHIMAIMNG**CHLVLLM 2176


>BF071504 
          Length = 422

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 27/66 (40%), Positives = 40/66 (59%)
 Frame = -3

Query: 284 VLVSLIVLL*LLL*ILVLLIVSLLLIVHISWVWLYLI*MEKWLLKLQLRVQ*LLLLFV*V 343
           +L+ L++LL  LL*  ++L++ LLL+         L+* +K LL L L    LLLL + +
Sbjct: 354 LLLMLLLLLLQLL*EQIMLLMLLLLL---------LL*-QKLLLLLLL----LLLLLLLL 217

Query: 344 VHCLCL 349
           V CLCL
Sbjct: 216 VQCLCL 199


>TC203407 weakly similar to UP|Q9ZT16 (Q9ZT16) Arabinogalactan-protein
           (AtAGP4) (AT5g10430/F12B17_220), partial (50%)
          Length = 966

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
 Frame = -2

Query: 285 LVSLIVLL*LLL*ILVLLIVSLLLIVHI----SWVWLYLI*MEKWLL 327
           LV L+++L LLL + +LL+V LLL+V +      VW  L+ +  W++
Sbjct: 383 LVVLVLVLVLLLVVELLLVVELLLVVGLLVVGLLVWWVLVQVLIWVV 243


>TC213108 
          Length = 767

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 15/31 (47%)
 Frame = +2

Query: 449 FLMCHQRGRLNFQLILFPERSRCRWHLTVCR 479
           F+ CH        + L P+R  C WH T CR
Sbjct: 338 FVPCH*SEFYFM*MFLLPKRLNCIWHQTCCR 430


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.370    0.166    0.609 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,764,320
Number of Sequences: 63676
Number of extensions: 409232
Number of successful extensions: 5542
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 3074
Number of HSP's gapped (non-prelim): 2593
length of query: 598
length of database: 12,639,632
effective HSP length: 103
effective length of query: 495
effective length of database: 6,081,004
effective search space: 3010096980
effective search space used: 3010096980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 62 (28.5 bits)