Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148406.1 + phase: 0 
         (114 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis th...   136  1e-33
CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thal...   126  2e-30
BE823641                                                               37  0.001
AW508814                                                               31  0.098
TC217347 homologue to UP|AOX1_SOYBN (Q07185) Alternative oxidase...    28  0.64
TC204349 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip...    27  1.1
TC204351 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip...    27  1.1
TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protei...    27  1.9
TC222912 similar to UP|RDGC_SHEON (Q8EGP3) Recombination associa...    26  3.2
BQ081187 homologue to GP|6573169|gb|A isoflavone reductase homol...    25  4.1
BQ742201                                                               25  4.1
BE660448                                                               25  4.1
TC229069                                                               25  5.4
TC210032 similar to UP|Q41012 (Q41012) Endo-1,4-beta-glucanase p...    25  5.4
AW186254                                                               25  5.4
TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI...    25  5.4
TC227653 similar to UP|O80383 (O80383) 98b, partial (78%)              25  5.4
TC218026 weakly similar to UP|Q9ZTA9 (Q9ZTA9) Mannose lectin, pa...    25  7.1
TC220053 similar to UP|Q6TM09 (Q6TM09) Phospholipase C (Fragment...    25  7.1
TC220567 UP|Q7VQB0 (Q7VQB0) Preprotein translocase YajC subunit,...    24  9.2

>CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
           partial (31%)
          Length = 470

 Score =  136 bits (343), Expect = 1e-33
 Identities = 75/112 (66%), Positives = 85/112 (74%), Gaps = 7/112 (6%)
 Frame = -1

Query: 10  FRTE-SFGYY------NFPDQNYTMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVW 62
           FR+E  FGYY      N+ +QN TM+EKRQLFLRSYQFCRKKSLTERIKGSLVRAKK+VW
Sbjct: 461 FRSEVPFGYYCYNNNNNYSEQNNTMVEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKIVW 282

Query: 63  LKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSCLW 114
           L+LR A  LRR       FKC FYYRRRRF QLL+    S++RK +SSSCLW
Sbjct: 281 LRLRSACKLRRS------FKCAFYYRRRRFFQLLH----SNNRKTESSSCLW 156


>CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
           partial (34%)
          Length = 473

 Score =  126 bits (316), Expect = 2e-30
 Identities = 65/96 (67%), Positives = 76/96 (78%)
 Frame = +3

Query: 19  NFPDQNYTMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFF 78
           N+ +QN TM+EKRQ+FLRSYQFCRKKS TERIKGSLVRAKK+VWL+LR A  LRR L   
Sbjct: 30  NYTEQNNTMLEKRQVFLRSYQFCRKKSFTERIKGSLVRAKKIVWLRLRSACKLRRSL--- 200

Query: 79  PRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSCLW 114
              KC FYYRRRRF QLL+N   +++R  +SSSCLW
Sbjct: 201 ---KCAFYYRRRRFFQLLHN---NNNRITESSSCLW 290


>BE823641 
          Length = 708

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 23/66 (34%), Positives = 36/66 (53%)
 Frame = -1

Query: 28  IEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYY 87
           I  RQ++LRSY+F RK+S+ E+ +    R K+ V  + R   G+RR+       KC  + 
Sbjct: 525 ISCRQMYLRSYKFSRKESVPEKTQKCFGRVKERVKKQGRSHHGIRRR-------KCLVWR 367

Query: 88  RRRRFS 93
           + R  S
Sbjct: 366 KMREIS 349


>AW508814 
          Length = 376

 Score = 30.8 bits (68), Expect = 0.098
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 28  IEKRQLFLRSYQFCRKKSLTERIKGSLVRAK 58
           I  RQ++LRSY+F RK+S+ E+ +    R K
Sbjct: 282 ISCRQMYLRSYKFSRKESVPEKTQKCFGRVK 374


>TC217347 homologue to UP|AOX1_SOYBN (Q07185) Alternative oxidase 1,
            mitochondrial precursor  , complete
          Length = 1709

 Score = 28.1 bits (61), Expect = 0.64
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
 Frame = -1

Query: 12   TESFGY------YNFPDQNYTMIEKRQ----LFLRSYQFCRKKSLTERIKGSLVRAKKVV 61
            T SF Y      YNF D NYT          +F +S    ++K  ++R K     AK + 
Sbjct: 1520 TSSFWYHIHDDAYNFQDSNYTDFNLNSFCPLIFNKSKSKTKQKPYSKRNKSRN**AKTIS 1341

Query: 62   WLKLRY 67
            W  +RY
Sbjct: 1340 WRCVRY 1323


>TC204349 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
           56, partial (55%)
          Length = 948

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 21/47 (44%), Positives = 26/47 (54%)
 Frame = -1

Query: 48  ERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQ 94
           E I G LV A+K+V L L     LRR+LV F   +   + RRRR  Q
Sbjct: 429 EEIAG-LVGAEKIVLLHLHV---LRRRLVLFLELETVVHRRRRRRRQ 301


>TC204351 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
           56, partial (31%)
          Length = 558

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 21/47 (44%), Positives = 26/47 (54%)
 Frame = -3

Query: 48  ERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQ 94
           E I G LV A+K+V L L     LRR+LV F   +   + RRRR  Q
Sbjct: 211 EEIAG-LVGAEKIVLLHLHV---LRRRLVLFLELETVVHRRRRRRRQ 83


>TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protein-like,
          partial (53%)
          Length = 655

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 75 LVFFPRFKCGFYYRRRRFSQLLNN 98
          L+FFP  +   YYR R+  QLL+N
Sbjct: 79 LLFFPEPQAPLYYRSRQ*LQLLHN 8


>TC222912 similar to UP|RDGC_SHEON (Q8EGP3) Recombination associated protein
           rdgC, partial (6%)
          Length = 466

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
 Frame = +3

Query: 29  EKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWL-KLRYARGLRRKLV 76
           E RQ  L      RKK  TE++K SL RAK    L +++  +  RR L+
Sbjct: 87  ELRQDSLEKQVPTRKKGWTEKVKFSLRRAKSDPPLSRIQSGKNFRRSLL 233


>BQ081187 homologue to GP|6573169|gb|A isoflavone reductase homolog 1
           {Glycine max}, partial (26%)
          Length = 383

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 12/52 (23%), Positives = 26/52 (49%)
 Frame = +3

Query: 37  SYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYR 88
           ++   R+ +L+   K  L+ + K   + L YA   + + +FF   K  +Y++
Sbjct: 114 TFALVRESTLSHPEKSKLIESFKTSGVPLLYALAFQSQFLFFFSNKLQYYFK 269


>BQ742201 
          Length = 433

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 38  YQFCRKKSLTERIKGSLVRAKKVVWLK 64
           Y+F    +L E + G LV  + + W+K
Sbjct: 144 YEFMHNGTLKEHLYGPLVHGRSINWIK 224


>BE660448 
          Length = 538

 Score = 25.4 bits (54), Expect = 4.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 62  WLKLRYARGLRRKLVFFPRFKCGFYYRRRR 91
           WL+L +  G  RKL  F      FYY   R
Sbjct: 378 WLRLHFQAGTERKLTTF-----SFYYNNNR 452


>TC229069 
          Length = 526

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 62  WLKLRYARGLRRKLVFFPRFKCGFYYRRRR------FSQLLNNSGSSHHRKVDSSSCL 113
           WLKLR   G  R     P        RR+R      FSQL + + S+HH +   S CL
Sbjct: 40  WLKLR---GRSRTPKPVPEMTQQGILRRQRSNQVKPFSQLRSQTTSTHHLRRLFSQCL 204


>TC210032 similar to UP|Q41012 (Q41012) Endo-1,4-beta-glucanase precursor ,
           partial (58%)
          Length = 929

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 82  KCGFYYR---RRRFSQLLNNSGSSHHRKVDSSSCLW 114
           +CGF +R   RRR  ++  ++G  HH  V   + +W
Sbjct: 244 QCGFKWRVL*RRRQCEIQLSNGLHHHHAVMGHN*IW 351


>AW186254 
          Length = 352

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 101 SSHHRKVDSSSCLW 114
           SS HRK D + C+W
Sbjct: 251 SSSHRKFDDAECIW 210


>TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
           finger protein; 17145-17621), partial (34%)
          Length = 915

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 40  FCRKKSLTERIKGSLVRAKKVVWLKL 65
           FCR KS + RIK SLV+ +K + L++
Sbjct: 724 FCR*KSYSIRIKFSLVKKEKNLELEV 647


>TC227653 similar to UP|O80383 (O80383) 98b, partial (78%)
          Length = 1654

 Score = 25.0 bits (53), Expect = 5.4
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 27  MIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLR 72
           +++KR+  +R Y   RKK +   ++   V+ ++    K   +RGLR
Sbjct: 623 LVQKRRSLMRGYTMRRKKLICR*LQRKNVKLRQ*GCWKTSRSRGLR 760


>TC218026 weakly similar to UP|Q9ZTA9 (Q9ZTA9) Mannose lectin, partial (72%)
          Length = 1102

 Score = 24.6 bits (52), Expect = 7.1
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +3

Query: 96  LNNSGSSHHRKV 107
           L NS SSHHRKV
Sbjct: 492 LKNSSSSHHRKV 527


>TC220053 similar to UP|Q6TM09 (Q6TM09) Phospholipase C (Fragment), partial
            (66%)
          Length = 1341

 Score = 24.6 bits (52), Expect = 7.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 26   TMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVV 61
            T +E  Q+++ S+ FC ++ LTE    +L+ A K V
Sbjct: 1090 TALEASQIYI-SFPFCHREGLTEIHFLALILANKFV 986


>TC220567 UP|Q7VQB0 (Q7VQB0) Preprotein translocase YajC subunit, partial
           (9%)
          Length = 694

 Score = 24.3 bits (51), Expect = 9.2
 Identities = 12/36 (33%), Positives = 18/36 (49%)
 Frame = -3

Query: 56  RAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRR 91
           R+  ++ L L   RGL+R  V FP      +Y  R+
Sbjct: 656 RSIHILLLLLXLVRGLKRXXVMFPELMIKIHYP*RK 549


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.329    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,982,271
Number of Sequences: 63676
Number of extensions: 80309
Number of successful extensions: 501
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of query: 114
length of database: 12,639,632
effective HSP length: 90
effective length of query: 24
effective length of database: 6,908,792
effective search space: 165811008
effective search space used: 165811008
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)


Medicago: description of AC148406.1