
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148406.1 + phase: 0
(114 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis th... 136 1e-33
CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thal... 126 2e-30
BE823641 37 0.001
AW508814 31 0.098
TC217347 homologue to UP|AOX1_SOYBN (Q07185) Alternative oxidase... 28 0.64
TC204349 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip... 27 1.1
TC204351 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zip... 27 1.1
TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protei... 27 1.9
TC222912 similar to UP|RDGC_SHEON (Q8EGP3) Recombination associa... 26 3.2
BQ081187 homologue to GP|6573169|gb|A isoflavone reductase homol... 25 4.1
BQ742201 25 4.1
BE660448 25 4.1
TC229069 25 5.4
TC210032 similar to UP|Q41012 (Q41012) Endo-1,4-beta-glucanase p... 25 5.4
AW186254 25 5.4
TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI... 25 5.4
TC227653 similar to UP|O80383 (O80383) 98b, partial (78%) 25 5.4
TC218026 weakly similar to UP|Q9ZTA9 (Q9ZTA9) Mannose lectin, pa... 25 7.1
TC220053 similar to UP|Q6TM09 (Q6TM09) Phospholipase C (Fragment... 25 7.1
TC220567 UP|Q7VQB0 (Q7VQB0) Preprotein translocase YajC subunit,... 24 9.2
>CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
partial (31%)
Length = 470
Score = 136 bits (343), Expect = 1e-33
Identities = 75/112 (66%), Positives = 85/112 (74%), Gaps = 7/112 (6%)
Frame = -1
Query: 10 FRTE-SFGYY------NFPDQNYTMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVW 62
FR+E FGYY N+ +QN TM+EKRQLFLRSYQFCRKKSLTERIKGSLVRAKK+VW
Sbjct: 461 FRSEVPFGYYCYNNNNNYSEQNNTMVEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKIVW 282
Query: 63 LKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSCLW 114
L+LR A LRR FKC FYYRRRRF QLL+ S++RK +SSSCLW
Sbjct: 281 LRLRSACKLRRS------FKCAFYYRRRRFFQLLH----SNNRKTESSSCLW 156
>CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
partial (34%)
Length = 473
Score = 126 bits (316), Expect = 2e-30
Identities = 65/96 (67%), Positives = 76/96 (78%)
Frame = +3
Query: 19 NFPDQNYTMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFF 78
N+ +QN TM+EKRQ+FLRSYQFCRKKS TERIKGSLVRAKK+VWL+LR A LRR L
Sbjct: 30 NYTEQNNTMLEKRQVFLRSYQFCRKKSFTERIKGSLVRAKKIVWLRLRSACKLRRSL--- 200
Query: 79 PRFKCGFYYRRRRFSQLLNNSGSSHHRKVDSSSCLW 114
KC FYYRRRRF QLL+N +++R +SSSCLW
Sbjct: 201 ---KCAFYYRRRRFFQLLHN---NNNRITESSSCLW 290
>BE823641
Length = 708
Score = 37.0 bits (84), Expect = 0.001
Identities = 23/66 (34%), Positives = 36/66 (53%)
Frame = -1
Query: 28 IEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYY 87
I RQ++LRSY+F RK+S+ E+ + R K+ V + R G+RR+ KC +
Sbjct: 525 ISCRQMYLRSYKFSRKESVPEKTQKCFGRVKERVKKQGRSHHGIRRR-------KCLVWR 367
Query: 88 RRRRFS 93
+ R S
Sbjct: 366 KMREIS 349
>AW508814
Length = 376
Score = 30.8 bits (68), Expect = 0.098
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 28 IEKRQLFLRSYQFCRKKSLTERIKGSLVRAK 58
I RQ++LRSY+F RK+S+ E+ + R K
Sbjct: 282 ISCRQMYLRSYKFSRKESVPEKTQKCFGRVK 374
>TC217347 homologue to UP|AOX1_SOYBN (Q07185) Alternative oxidase 1,
mitochondrial precursor , complete
Length = 1709
Score = 28.1 bits (61), Expect = 0.64
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Frame = -1
Query: 12 TESFGY------YNFPDQNYTMIEKRQ----LFLRSYQFCRKKSLTERIKGSLVRAKKVV 61
T SF Y YNF D NYT +F +S ++K ++R K AK +
Sbjct: 1520 TSSFWYHIHDDAYNFQDSNYTDFNLNSFCPLIFNKSKSKTKQKPYSKRNKSRN**AKTIS 1341
Query: 62 WLKLRY 67
W +RY
Sbjct: 1340 WRCVRY 1323
>TC204349 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
56, partial (55%)
Length = 948
Score = 27.3 bits (59), Expect = 1.1
Identities = 21/47 (44%), Positives = 26/47 (54%)
Frame = -1
Query: 48 ERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQ 94
E I G LV A+K+V L L LRR+LV F + + RRRR Q
Sbjct: 429 EEIAG-LVGAEKIVLLHLHV---LRRRLVLFLELETVVHRRRRRRRQ 301
>TC204351 homologue to UP|Q9SP48 (Q9SP48) Homeodomain-leucine zipper protein
56, partial (31%)
Length = 558
Score = 27.3 bits (59), Expect = 1.1
Identities = 21/47 (44%), Positives = 26/47 (54%)
Frame = -3
Query: 48 ERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRRFSQ 94
E I G LV A+K+V L L LRR+LV F + + RRRR Q
Sbjct: 211 EEIAG-LVGAEKIVLLHLHV---LRRRLVLFLELETVVHRRRRRRRQ 83
>TC211401 weakly similar to UP|Q94B74 (Q94B74) MutT domain protein-like,
partial (53%)
Length = 655
Score = 26.6 bits (57), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 75 LVFFPRFKCGFYYRRRRFSQLLNN 98
L+FFP + YYR R+ QLL+N
Sbjct: 79 LLFFPEPQAPLYYRSRQ*LQLLHN 8
>TC222912 similar to UP|RDGC_SHEON (Q8EGP3) Recombination associated protein
rdgC, partial (6%)
Length = 466
Score = 25.8 bits (55), Expect = 3.2
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Frame = +3
Query: 29 EKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWL-KLRYARGLRRKLV 76
E RQ L RKK TE++K SL RAK L +++ + RR L+
Sbjct: 87 ELRQDSLEKQVPTRKKGWTEKVKFSLRRAKSDPPLSRIQSGKNFRRSLL 233
>BQ081187 homologue to GP|6573169|gb|A isoflavone reductase homolog 1
{Glycine max}, partial (26%)
Length = 383
Score = 25.4 bits (54), Expect = 4.1
Identities = 12/52 (23%), Positives = 26/52 (49%)
Frame = +3
Query: 37 SYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYR 88
++ R+ +L+ K L+ + K + L YA + + +FF K +Y++
Sbjct: 114 TFALVRESTLSHPEKSKLIESFKTSGVPLLYALAFQSQFLFFFSNKLQYYFK 269
>BQ742201
Length = 433
Score = 25.4 bits (54), Expect = 4.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 38 YQFCRKKSLTERIKGSLVRAKKVVWLK 64
Y+F +L E + G LV + + W+K
Sbjct: 144 YEFMHNGTLKEHLYGPLVHGRSINWIK 224
>BE660448
Length = 538
Score = 25.4 bits (54), Expect = 4.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 62 WLKLRYARGLRRKLVFFPRFKCGFYYRRRR 91
WL+L + G RKL F FYY R
Sbjct: 378 WLRLHFQAGTERKLTTF-----SFYYNNNR 452
>TC229069
Length = 526
Score = 25.0 bits (53), Expect = 5.4
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +1
Query: 62 WLKLRYARGLRRKLVFFPRFKCGFYYRRRR------FSQLLNNSGSSHHRKVDSSSCL 113
WLKLR G R P RR+R FSQL + + S+HH + S CL
Sbjct: 40 WLKLR---GRSRTPKPVPEMTQQGILRRQRSNQVKPFSQLRSQTTSTHHLRRLFSQCL 204
>TC210032 similar to UP|Q41012 (Q41012) Endo-1,4-beta-glucanase precursor ,
partial (58%)
Length = 929
Score = 25.0 bits (53), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 82 KCGFYYR---RRRFSQLLNNSGSSHHRKVDSSSCLW 114
+CGF +R RRR ++ ++G HH V + +W
Sbjct: 244 QCGFKWRVL*RRRQCEIQLSNGLHHHHAVMGHN*IW 351
>AW186254
Length = 352
Score = 25.0 bits (53), Expect = 5.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 101 SSHHRKVDSSSCLW 114
SS HRK D + C+W
Sbjct: 251 SSSHRKFDDAECIW 210
>TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
finger protein; 17145-17621), partial (34%)
Length = 915
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3
Query: 40 FCRKKSLTERIKGSLVRAKKVVWLKL 65
FCR KS + RIK SLV+ +K + L++
Sbjct: 724 FCR*KSYSIRIKFSLVKKEKNLELEV 647
>TC227653 similar to UP|O80383 (O80383) 98b, partial (78%)
Length = 1654
Score = 25.0 bits (53), Expect = 5.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 27 MIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVVWLKLRYARGLR 72
+++KR+ +R Y RKK + ++ V+ ++ K +RGLR
Sbjct: 623 LVQKRRSLMRGYTMRRKKLICR*LQRKNVKLRQ*GCWKTSRSRGLR 760
>TC218026 weakly similar to UP|Q9ZTA9 (Q9ZTA9) Mannose lectin, partial (72%)
Length = 1102
Score = 24.6 bits (52), Expect = 7.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 96 LNNSGSSHHRKV 107
L NS SSHHRKV
Sbjct: 492 LKNSSSSHHRKV 527
>TC220053 similar to UP|Q6TM09 (Q6TM09) Phospholipase C (Fragment), partial
(66%)
Length = 1341
Score = 24.6 bits (52), Expect = 7.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 26 TMIEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKVV 61
T +E Q+++ S+ FC ++ LTE +L+ A K V
Sbjct: 1090 TALEASQIYI-SFPFCHREGLTEIHFLALILANKFV 986
>TC220567 UP|Q7VQB0 (Q7VQB0) Preprotein translocase YajC subunit, partial
(9%)
Length = 694
Score = 24.3 bits (51), Expect = 9.2
Identities = 12/36 (33%), Positives = 18/36 (49%)
Frame = -3
Query: 56 RAKKVVWLKLRYARGLRRKLVFFPRFKCGFYYRRRR 91
R+ ++ L L RGL+R V FP +Y R+
Sbjct: 656 RSIHILLLLLXLVRGLKRXXVMFPELMIKIHYP*RK 549
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.329 0.140 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,982,271
Number of Sequences: 63676
Number of extensions: 80309
Number of successful extensions: 501
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of query: 114
length of database: 12,639,632
effective HSP length: 90
effective length of query: 24
effective length of database: 6,908,792
effective search space: 165811008
effective search space used: 165811008
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC148406.1