BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148360.15 - phase: 0
(422 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220152 similar to UP|O65426 (O65426) Lsd1 like protein (At4g21... 47 1e-05
TC226320 homologue to UP|Q93ZB1 (Q93ZB1) At1g32540/T9G5_1 (LSD1-... 40 0.003
TC222751 similar to UP|P94077 (P94077) Zinc-finger protein Lsd1,... 39 0.004
TC230432 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting... 33 0.32
TC210187 weakly similar to UP|DHX9_HUMAN (Q08211) ATP-dependent ... 30 1.6
TC232041 similar to UP|Q91TR1 (Q91TR1) T32, partial (3%) 30 2.0
TC230387 similar to UP|Q9FHN0 (Q9FHN0) Similarity to endopeptida... 30 2.0
TC227165 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-bind... 29 3.5
TC207037 similar to UP|Q8W195 (Q8W195) Zinc finger protein LSD1,... 29 3.5
TC218008 similar to UP|Q6NNG9 (Q6NNG9) At1g30300, partial (86%) 29 4.6
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno... 28 5.9
TC211424 homologue to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, pa... 28 5.9
AW757161 28 5.9
TC205146 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-li... 28 7.8
TC230234 28 7.8
TC220316 28 7.8
TC226315 homologue to UP|Q93ZB1 (Q93ZB1) At1g32540/T9G5_1 (LSD1-... 28 7.8
>TC220152 similar to UP|O65426 (O65426) Lsd1 like protein (At4g21610),
partial (61%)
Length = 701
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Frame = +2
Query: 4 QPQPPPPSTARAR--CAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAV 61
QP PPP + A+ C CR S +G + C CQ ++ +++C SC +
Sbjct: 200 QPPPPPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVL 379
Query: 62 VNAPSNLSKFPCPQCHVRIDVHADVE----EVNEKIDSEPVISC 101
+ P S+ C C ++ A + V ++ S P C
Sbjct: 380 LMYPYGASQVRCSSCRFVTEIGAHNKRPPWSVQQRKPSPPKTGC 511
>TC226320 homologue to UP|Q93ZB1 (Q93ZB1) At1g32540/T9G5_1 (LSD1-like),
partial (92%)
Length = 1081
Score = 39.7 bits (91), Expect = 0.003
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Frame = +3
Query: 8 PPPSTARAR--CAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAP 65
PPP T A+ C GC T +G + C C ++ + + C +C+ ++
Sbjct: 495 PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLAYQ 674
Query: 66 SNLSKFPCPQCHVRIDVHADVEEVNEKIDS 95
C C+ V A +K +
Sbjct: 675 YGARSVKCAVCNFVTSVGATASTTEQKFST 764
>TC222751 similar to UP|P94077 (P94077) Zinc-finger protein Lsd1, partial
(85%)
Length = 704
Score = 38.9 bits (89), Expect = 0.004
Identities = 32/134 (23%), Positives = 52/134 (37%), Gaps = 7/134 (5%)
Frame = +1
Query: 7 PPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAPS 66
PP ++ C GC T +G + C C ++ V S I C++C+ + P
Sbjct: 196 PPGMDMSQLYCGGCTTLLMYTRGATSVRCSCCHTINLVPVLESNQVIHCTNCRTTLMYPY 375
Query: 67 NLSKFPCPQCHVRIDVH-------ADVEEVNEKIDSEPVISCFHKFSQTVSQELDMLQNP 119
S C C +V V+ N +S V S + SQ + +++NP
Sbjct: 376 GASSVKCAICRYITNVSMTNGRLPIPVQRPNGTANSGTVSSTSSSMPHSQSQTV-VVENP 552
Query: 120 RETVGKQSVLVNEV 133
+V LV+ V
Sbjct: 553 M-SVDSSGKLVSNV 591
>TC230432 similar to UP|Q9FJY3 (Q9FJY3) Photoreceptor-interacting
protein-like, partial (20%)
Length = 745
Score = 32.7 bits (73), Expect = 0.32
Identities = 14/38 (36%), Positives = 19/38 (49%)
Frame = -2
Query: 2 NRQPQPPPPSTARARCAGCRTYFSAAQGVAELPCPNCQ 39
N P PPPS +R+ A CR +AA +P C+
Sbjct: 264 NPNPSRPPPSASRSSAADCRPGSAAASAAISVPAMACR 151
>TC210187 weakly similar to UP|DHX9_HUMAN (Q08211) ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (NDH II) (DEAH-box protein
9), partial (7%)
Length = 691
Score = 30.4 bits (67), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (50%)
Frame = +2
Query: 173 AVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHLQHVPSGPRAG 221
A+QPP+P +KN +E K + L + + RHL ++P P G
Sbjct: 428 ALQPPDPL---AVKNAIELLKTIGALDEQEELTPLGRHLCNIPLDPNIG 565
>TC232041 similar to UP|Q91TR1 (Q91TR1) T32, partial (3%)
Length = 586
Score = 30.0 bits (66), Expect = 2.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 5 PQPPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMP 41
P PPPP + AG F G A LP P+ +P
Sbjct: 139 PLPPPPDESAEPPAGPNAMFQFTCGAAPLPAPSPPLP 29
>TC230387 similar to UP|Q9FHN0 (Q9FHN0) Similarity to endopeptidase, partial
(27%)
Length = 703
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = +3
Query: 355 KTGQAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGAGTFFPDFGEFLGSVLS 413
K + + + QLP +V C+ +G+ P VRL W T F +FG L S+LS
Sbjct: 96 KGARRISQTEYQLPIVALV-CNFSGSRNPS----AVRLNHWEVETLFHEFGHALHSLLS 257
>TC227165 similar to UP|Q9FGL9 (Q9FGL9) Polypyrimidine tract-binding RNA
transport protein-like, partial (31%)
Length = 1123
Score = 29.3 bits (64), Expect = 3.5
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -3
Query: 47 DSSAVKIRCSSCKAVVNAPSNLSKFPCPQCHVRIDVHADVEEVNEKIDSEPV--ISC--F 102
D V RC +CK + + S L +FP PQ ++ + D+E SEPV SC
Sbjct: 440 DQYDVNTRCEACKNLHHICSVLPRFPWPQ---QLFGYLDIE-------SEPVNHHSCQTL 291
Query: 103 HKFSQTVSQELDMLQNPR 120
F Q Q +++PR
Sbjct: 290 QSFGQVQRQRKPCVRHPR 237
>TC207037 similar to UP|Q8W195 (Q8W195) Zinc finger protein LSD1, partial
(52%)
Length = 619
Score = 29.3 bits (64), Expect = 3.5
Identities = 14/49 (28%), Positives = 25/49 (50%)
Frame = +2
Query: 26 AAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAPSNLSKFPCP 74
A+ VA + C NC+ ++ + +VK C+ C + N +N + P P
Sbjct: 32 ASNQVAHVHCGNCRTTLMYPYGAPSVK--CALCHFITNVSTNNGRLPIP 172
>TC218008 similar to UP|Q6NNG9 (Q6NNG9) At1g30300, partial (86%)
Length = 1428
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 143 AGETFTDYRPSKLSIGSPHPDPIVETSSLSAVQPPEPTYD 182
AG+TF + S + + H D ++ + AVQP PT D
Sbjct: 343 AGKTFRETVLSSILLTHEHADAVLGLDDIRAVQPFSPTND 462
>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K24M7, partial (36%)
Length = 1224
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +2
Query: 3 RQPQPPPPSTARARCAGCRTYFSAAQGVAELPCP 36
R P P PP T R +T S+A+G + P P
Sbjct: 122 RSPSPHPPKTPTRRKRRTKTALSSARGPSPSPAP 223
>TC211424 homologue to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, partial (7%)
Length = 566
Score = 28.5 bits (62), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Frame = +2
Query: 10 PSTARARCAGCRTYFSA-AQGVAELPCPNCQ 39
PSTA + R++F Q + ELPCP+C+
Sbjct: 434 PSTANSHTPEPRSWFGPNGQYIRELPCPSCR 526
>AW757161
Length = 395
Score = 28.5 bits (62), Expect = 5.9
Identities = 15/47 (31%), Positives = 21/47 (43%)
Frame = +1
Query: 130 VNEVEQEEGDGGIAGETFTDYRPSKLSIGSPHPDPIVETSSLSAVQP 176
+N + + GETF Y + S G PD I E + L +QP
Sbjct: 157 INTTADNQANYSPYGETFFKYPTGRFSDGRVIPDFIAEYAKLPLIQP 297
>TC205146 similar to UP|Q8LJ68 (Q8LJ68) Protein phosphatase 2C-like protein,
partial (55%)
Length = 1606
Score = 28.1 bits (61), Expect = 7.8
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Frame = -2
Query: 2 NRQPQPPPPSTARARCAGCRTYFSAAQGVAELPCPN--------CQMPHVFFVDSS---- 49
NR S+A+A+C R YF+ E PCP+ C + H+F +
Sbjct: 501 NRPSLTDSISSAKAKCMRSRQYFA----T*EPPCPS*TPKKCIVC*LKHLFIPSGNLSPV 334
Query: 50 AVKIRCSSCKAVVNAPSNLS-KFPCPQCHVRIDVHADVEEVNEKI 93
++ I + V A S++S FP H ++ H+ V+ ++ +
Sbjct: 333 SISIGIFKNRGTVAAASSISGLFP----HTEVNPHSGVQSNSQTL 211
>TC230234
Length = 959
Score = 28.1 bits (61), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (53%), Gaps = 8/35 (22%)
Frame = -3
Query: 227 GAGVGK-GRTVAGLIWE-------NWHHGRRKTLW 253
G+GV + GR V+G W NW H RRK+ W
Sbjct: 108 GSGVHRLGRRVSGGSWRECRGERGNWRHWRRKSRW 4
>TC220316
Length = 988
Score = 28.1 bits (61), Expect = 7.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 374 YCSATGASEPRNMAYMVRLGLWGAGTFFPDFGEFLGSVLSLIFSF 418
+C+ G S Y VRL + F F FLG +L+L+ +
Sbjct: 797 FCARVGESFVGTGEYSVRLCIHSCTIIFCSFNCFLGGILALLIKY 931
>TC226315 homologue to UP|Q93ZB1 (Q93ZB1) At1g32540/T9G5_1 (LSD1-like),
partial (66%)
Length = 491
Score = 28.1 bits (61), Expect = 7.8
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Frame = +2
Query: 8 PPPSTARAR--CAGCRTYFSAAQGVAELPCPNC 38
PPP T A+ C GC T +G + C C
Sbjct: 347 PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCC 445
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,676,025
Number of Sequences: 63676
Number of extensions: 381291
Number of successful extensions: 2623
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of query: 422
length of database: 12,639,632
effective HSP length: 100
effective length of query: 322
effective length of database: 6,272,032
effective search space: 2019594304
effective search space used: 2019594304
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148360.15