TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148360.12 + phase: 0 /pseudo
         (102 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229735 similar to GB|BAB08855.1|9758354|AB013396 branched-chai...    27  2.1
TC220550 similar to GB|AAR28023.1|39545920|AY463621 TAF6 {Arabid...    26  3.5
BQ629467 similar to GP|16648836|gb At5g03555/C415EPL23M {Arabido...    26  3.5
TC214485 similar to UP|O23144 (O23144) Proton pump interactor (A...    25  6.0
TC227628 similar to UP|Q6H8E0 (Q6H8E0) Kelch repeat-containing F...    25  7.8
TC214855 weakly similar to UP|STO_ARATH (Q96288) Salt-tolerance ...    25  7.8

>TC229735 similar to GB|BAB08855.1|9758354|AB013396 branched-chain amino acid
           aminotransferase-like protein {Arabidopsis thaliana;} ,
           partial (82%)
          Length = 1101

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 20/52 (38%), Positives = 26/52 (49%), Gaps = 7/52 (13%)
 Frame = +1

Query: 3   TKVDPPFD-------VIWVYSAIKFGCRKSLKGDILEQISAAKALFQLISAC 47
           +K+DPPFD       +I   SA K  CR   KG +   +SA    FQL  +C
Sbjct: 277 SKIDPPFDRGSIRRILIQTVSASK--CR---KGSLRYWLSAGPGDFQLSPSC 417


>TC220550 similar to GB|AAR28023.1|39545920|AY463621 TAF6 {Arabidopsis
           thaliana;} , partial (23%)
          Length = 915

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 40  LFQLISACSASVGGSKSIALLAPKAMK 66
           LFQL+ AC A +  SK+  +  P +MK
Sbjct: 472 LFQLLKACLAFMS*SKNFCIGLPDSMK 392


>BQ629467 similar to GP|16648836|gb At5g03555/C415EPL23M {Arabidopsis
           thaliana}, partial (26%)
          Length = 429

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 53  GSKSIALLAPKAMKEVKSL 71
           G ++I LL PKAMKE  SL
Sbjct: 179 GGEAIFLLLPKAMKEATSL 235


>TC214485 similar to UP|O23144 (O23144) Proton pump interactor
           (AT4g27500/F27G19_100), partial (33%)
          Length = 1501

 Score = 25.0 bits (53), Expect = 6.0
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 22  CRKSLKGDILEQISAAK--ALFQLISACSASVGGSKSIALLA 61
           CR S  G  L   S+ K  +LFQ   A S SV  S SIAL++
Sbjct: 461 CRMSSDGKSLFS*SSLKDLSLFQSDIAFSTSVCASSSIALIS 336


>TC227628 similar to UP|Q6H8E0 (Q6H8E0) Kelch repeat-containing F-box-like,
            partial (19%)
          Length = 1524

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 10/26 (38%), Positives = 17/26 (64%)
 Frame = +1

Query: 67   EVKSLVDMILGFMSICCSKISEEKDL 92
            E++SL   +  F+ +CC  +S+ KDL
Sbjct: 1420 EIRSLFKDLGMFIHLCCVALSQGKDL 1497


>TC214855 weakly similar to UP|STO_ARATH (Q96288) Salt-tolerance protein,
          partial (32%)
          Length = 835

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 36 AAKALFQLISACSASVGGSKSIALLAPKAMKEV 68
          +A+   Q  SA S  V G   + L+APKAMK+V
Sbjct: 5  SARGFLQTTSASSLLVSGWLWV-LIAPKAMKKV 100


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,277,712
Number of Sequences: 63676
Number of extensions: 43648
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of query: 102
length of database: 12,639,632
effective HSP length: 78
effective length of query: 24
effective length of database: 7,672,904
effective search space: 184149696
effective search space used: 184149696
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)