BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148359.7 + phase: 0
(789 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 369 e-102
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 274 1e-73
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 217 1e-70
BQ628592 106 5e-46
BI498328 123 3e-28
AW184779 109 4e-24
BI316922 100 4e-21
NP595172 polyprotein [Glycine max] 95 1e-19
BE804087 81 2e-15
BI321666 80 3e-15
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 76 5e-14
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 60 3e-09
TC211815 47 9e-09
TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 56 5e-08
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 56 7e-08
BE802896 54 2e-07
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 48 1e-05
BI424213 47 4e-05
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 43 5e-04
AW570005 41 0.002
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 369 bits (946), Expect = e-102
Identities = 170/274 (62%), Positives = 209/274 (76%)
Frame = +1
Query: 336 NHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVGYKPWYYDIKQFLLSREYPPGASKQ 395
N D+P I+ +P+H + + D KPWY+DIK++++S+EY P +
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQVEEERDG--------KPWYFDIKRYVISKEYLPEIADN 201
Query: 396 DKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 455
DK+TLRRLA F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 456 KLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRI 515
K+LRAGYYW+ ME DC + RKCHKCQ +AD ++ PPH LNVMSSPWPFSMWGID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 516 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 575
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 576 LNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAA 609
LNN ++ +CEEFKI+HHN +PYRP+MN AVE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 274 bits (701), Expect = 1e-73
Identities = 128/183 (69%), Positives = 157/183 (84%)
Frame = +1
Query: 607 EAANKNIKRIVQKMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 666
EAANKNIK+I+QKM +YK+WHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 667 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFK 726
+PSLR++ E+ L E+EW Q+RYDQLNLIE KR+ AM+ G YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 727 VGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 786
G+LVLK+ D RGKW PNYEGP+VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 787 YFA 789
Y+A
Sbjct: 541 YYA 549
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 217 bits (553), Expect(2) = 1e-70
Identities = 104/207 (50%), Positives = 143/207 (68%)
Frame = +2
Query: 258 IEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPR 317
++ AID +K L +YGDSALVI+Q++GE ET NLIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 318 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVGYKPWYY 377
+ENQMADALATL SMF++ D+P I+ + RP+H + + D KPWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDG--------KPWYF 541
Query: 378 DIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 437
DIK+++ S+EYP AS DK+ RRLA F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 438 DVHDGTFGTHATGHTMSRKLLRAGYYW 464
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 68.9 bits (167), Expect(2) = 1e-70
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +1
Query: 202 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 254
+ KW + FD A N G G+GA++VSP IPFT R+ F+CTNNMAEYEAC
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>BQ628592
Length = 423
Score = 106 bits (264), Expect(2) = 5e-46
Identities = 48/76 (63%), Positives = 59/76 (77%)
Frame = -1
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L KNQ I+WN QEAF+ IK L P +L+PPV GRP +LY+++ DES+GCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 67 GKKEHAIYYLSKKFTD 82
GKKE AIYYLSKKFTD
Sbjct: 243 GKKEQAIYYLSKKFTD 196
Score = 97.8 bits (242), Expect(2) = 5e-46
Identities = 41/61 (67%), Positives = 54/61 (88%)
Frame = -3
Query: 87 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARGQMLLSEYD 146
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK +TG+IAR Q+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 147 I 147
I
Sbjct: 4 I 2
>BI498328
Length = 335
Score = 123 bits (309), Expect = 3e-28
Identities = 64/117 (54%), Positives = 79/117 (66%)
Frame = +1
Query: 151 TQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLV 210
TQKA+KGS LAD+LA PL Y+P+ +FPDE+IM L + IN KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDIN-------KWIVC 162
Query: 211 FDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 267
FDGA NA G G+GAV+VSP IPFTAR+ F+CTNNMAEYEAC G++ AID +K
Sbjct: 163 FDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>AW184779
Length = 432
Score = 109 bits (273), Expect = 4e-24
Identities = 47/74 (63%), Positives = 59/74 (79%)
Frame = +1
Query: 409 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAME 468
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYW+ ME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 469 HDCYQYARKCHKCQ 482
DC + KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 84.7 bits (208), Expect = 1e-16
Identities = 50/114 (43%), Positives = 60/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 461 GYYWMAMEHDCY------------QYA-RKCHKCQIYADKIHVPPHALNVMSSPWPF--- 504
G W +H C+ Y R H C + VP +M +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 505 ------SMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 552
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI316922
Length = 405
Score = 99.8 bits (247), Expect = 4e-21
Identities = 46/135 (34%), Positives = 80/135 (59%)
Frame = +3
Query: 438 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNV 497
++H G G H+ M+ ++LR GYY M C +Y +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 498 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 557
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 558 IICRYGVPSKIITDN 572
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 95.1 bits (235), Expect = 1e-19
Identities = 140/556 (25%), Positives = 227/556 (40%), Gaps = 15/556 (2%)
Frame = +1
Query: 216 NAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDS 275
+A G G+GAV+ GH I + ++ L + Y + I EA+ + +H + G+
Sbjct: 2689 DASGIGVGAVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHY-LLGNK 2859
Query: 276 ALVINQIKGEWETHHANLIPYRDYA--RRLLTYFTKVELHHIPRDENQMADALATLSSMF 333
++ + +L A + L Y K+E + P +NQ ADAL S MF
Sbjct: 2860 FIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMF 3024
Query: 334 RVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVGYKPWYYDIKQFLLSREYPPGAS 393
+ W++ I ++ L I D +KQ L Y GA
Sbjct: 3025 MLA-WSEPHSIFLEELRAR----LISDP----------------HLKQ--LMETYKQGAD 3135
Query: 394 KQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 453
A + + +LY + D V++ +E +++ + H G HA G T
Sbjct: 3136 ----------ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITR 3273
Query: 454 SRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW---GID 510
+ L+A +YW M+ D Y +KC CQ +P L + P P +W +D
Sbjct: 3274 TLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL--PIPQQVWEDVAMD 3447
Query: 511 MIGRIEPKASNGHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKII 569
I + S G I+V ID TK+ + +VVA+ ++I+ +G+P I+
Sbjct: 3448 FITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIV 3621
Query: 570 TDNGTNLNNNVVQALCEEFKIEHHN---SSPYRPQMNGAVEAANKNIKRIVQKMVTTY-K 625
+D + Q L FK++ SS Y PQ +G E NK ++ ++ + K
Sbjct: 3622 SDRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPK 3792
Query: 626 NWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQ 685
W + LP+A Y T S G TPF +YG E P+L + AE +
Sbjct: 3793 GWVKALPWAEFWYNTAYHMSLGMTPFRALYGREP--------PTLTRQACSIDDPAEVRE 3948
Query: 686 SRYDQLNLIEEKRMDAMARGHSYQARMKTAFDKKVNPREFKVGELVL-----KRRISQQP 740
D+ L+ + +++ Q MK DKK F++G+ VL R+ S
Sbjct: 3949 QLTDRDALLAKLKINLTRA----QQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVL 4116
Query: 741 DPRGKWTPNYEGPYVV 756
K + Y GP+ V
Sbjct: 4117 RKNQKLSMRYFGPFKV 4164
Score = 55.5 bits (132), Expect = 9e-08
Identities = 36/128 (28%), Positives = 59/128 (45%)
Frame = +1
Query: 5 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRD 64
D L K+ +WN+E + AF +K + E P+L P +P IL VG VLGQ
Sbjct: 2557 DLLQKDS-FLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNG 2733
Query: 65 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKY 124
H I Y SKK + + + A+ A + RHYL+ + + + +K
Sbjct: 2734 ------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKS 2895
Query: 125 IFEKAVVT 132
+ ++++ T
Sbjct: 2896 LMDQSLQT 2919
>BE804087
Length = 160
Score = 80.9 bits (198), Expect = 2e-15
Identities = 37/53 (69%), Positives = 44/53 (82%)
Frame = +2
Query: 607 EAANKNIKRIVQKMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 659
EAANKNIK+ + KM +YK+WHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 80.1 bits (196), Expect = 3e-15
Identities = 44/129 (34%), Positives = 71/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 453 MSRKLLRAGYYWMAMEHDCYQYARKCHKCQ---IYADKIHVPPHALNVMSSPWPFSMWGI 509
+S +L++ +Y ++ D Y +A+ C+KCQ + + +P H + + F WGI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 510 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 569
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 570 TDNGTNLNN 578
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 76.3 bits (186), Expect = 5e-14
Identities = 40/122 (32%), Positives = 71/122 (57%), Gaps = 1/122 (0%)
Frame = -3
Query: 581 VQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV-TTYKNWHEMLPYALHGYR 639
+ AL +++ + H S+PY PQ NG E +N+ IKRI++K+V + K+W L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 640 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 699
T ++ G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 700 DA 701
+A
Sbjct: 16 EA 11
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 60.5 bits (145), Expect = 3e-09
Identities = 33/86 (38%), Positives = 47/86 (54%)
Frame = +1
Query: 245 TNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLL 304
TNN AEY A I G++ A+ + I GDS LV QI G W+ + NL + A+ L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 305 TYFTKVELHHIPRDENQMADALATLS 330
F+ ++ H+ R+ N ADA A L+
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>TC211815
Length = 704
Score = 47.4 bits (111), Expect(2) = 9e-09
Identities = 41/147 (27%), Positives = 71/147 (47%)
Frame = +2
Query: 643 RSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAM 702
+S+T TPF L+YG+ +LP+EV L A++ E Q L+LI++ R D +
Sbjct: 230 QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQI---DLDLIKQVREDTV 400
Query: 703 ARGHSYQARMKTAFDKKVNPREFKVGELVLKRRISQQPDPRGKWTPNYEGPYVVKKAFSG 762
+++ RM F+ K+ G + + S + R K+T N EGP+ ++
Sbjct: 401 IMT*AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKN 580
Query: 763 GALILTHMDGVELPNPVNADIVKKYFA 789
GA L + G + N+ +K Y++
Sbjct: 581 GAYKLEELSGKVVLRIWNSMHLKVYYS 661
Score = 31.2 bits (69), Expect(2) = 9e-09
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 571 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMV 621
DNG N + I+H +S PQ N EAANK I ++K++
Sbjct: 3 DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLL 155
>TC233372 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (12%)
Length = 561
Score = 56.2 bits (134), Expect = 5e-08
Identities = 31/86 (36%), Positives = 44/86 (51%)
Frame = +1
Query: 249 AEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFT 308
AEY + I G+ K + + GDS LV NQI+G W+ + N+ A+ L F
Sbjct: 1 AEYRSLILGLXHXXKKGYKXIIVQGDSLLVCNQIQGLWKIKNQNMGTLCXEAKELKDKFL 180
Query: 309 KVELHHIPRDENQMADALATLSSMFR 334
++ HIPR+ N ADA A L+ R
Sbjct: 181 SFKISHIPREYNSEADAQANLAINLR 258
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 55.8 bits (133), Expect = 7e-08
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3
Query: 598 YRPQMNGAVEAANKNIKRIVQKMV-TTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYG 656
Y PQ NG E +NK IKR+++ +V ++ K+W L A YR ++ G +PF LVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 657 MEAVLPLEVE 666
L +E+E
Sbjct: 54 KACHLSVELE 25
>BE802896
Length = 416
Score = 54.3 bits (129), Expect = 2e-07
Identities = 32/103 (31%), Positives = 50/103 (48%)
Frame = -2
Query: 7 LSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRDET 66
L K +ND+C+ AFD +K L+ PI+ P P L + ++G VL Q+ +
Sbjct: 337 LQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPDWTAPFELMCDASNYALGVVLAQKID- 161
Query: 67 GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 109
K IYY S+ + YT EK A+ +A ++ YL+
Sbjct: 160 -KLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFHSYLL 35
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/81 (28%), Positives = 43/81 (52%)
Frame = +3
Query: 548 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVE 607
++V KF+K NI R+G+P +I+D G++ + + + + + H + Y PQ NG +
Sbjct: 12 KIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNGQAK 191
Query: 608 AANKNIKRIVQKMVTTYKNWH 628
+N + + +K K WH
Sbjct: 192 VSNIHKENS*EK-----KMWH 239
Score = 33.5 bits (75), Expect = 0.37
Identities = 15/49 (30%), Positives = 27/49 (54%)
Frame = +2
Query: 618 QKMVTTYKNWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 666
+ + ++ K+W L AL +T ++ G TPF +VY LP+E++
Sbjct: 227 KNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELK 373
>BI424213
Length = 426
Score = 46.6 bits (109), Expect = 4e-05
Identities = 20/72 (27%), Positives = 40/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 595 SSPYRPQMNGAVEAANKNIKRIVQKMVT-TYKNWHEMLPYALHGYRTTVRSSTGATPFSL 653
S+ PQ +G + N+++ +++ ++ +K+W E LP+ Y V +T +PF +
Sbjct: 55 STTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEFAYNRGVHRTTKQSPFEV 234
Query: 654 VYGMEAVLPLEV 665
VYG + PL++
Sbjct: 235 VYGFNPLTPLDL 270
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 43.1 bits (100), Expect = 5e-04
Identities = 34/133 (25%), Positives = 54/133 (40%)
Frame = +1
Query: 5 DCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQRD 64
+ + KN W ++ ++AF +K L + P+L P + L V VL Q
Sbjct: 199 ELVKKNMAFTWGEKQEQAFALLKEKLTKAPVLALPDFSKTFELECDASGVGVRAVLLQGG 378
Query: 65 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKY 124
H I Y S+K Y +K AL A + H+LV + S +KY
Sbjct: 379 ------HPIAYFSEKLHSATLNYPTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKY 540
Query: 125 IFEKAVVTGKIAR 137
I K+ + + A+
Sbjct: 541 IRGKSKLNKRHAK 579
>AW570005
Length = 413
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/108 (25%), Positives = 43/108 (38%)
Frame = -2
Query: 4 LDCLSKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLILYLSVFDESVGCVLGQR 63
L L VW+ E AF ++KN + +L P +P + +G VL Q
Sbjct: 316 LSHLLTKDSFVWSPEADVAFQALKNVVTNTLVLALPDFTKPFTVETDASGSDMGAVLSQ- 140
Query: 64 DETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNH 111
+ H I + SK+F R + A+ K+ R YL+ H
Sbjct: 139 -----EGHPIAFFSKEFCPKLVRSSTYVHELAAITNVVKKWRQYLLGH 11
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,635,626
Number of Sequences: 63676
Number of extensions: 536974
Number of successful extensions: 2573
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 2407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of query: 789
length of database: 12,639,632
effective HSP length: 105
effective length of query: 684
effective length of database: 5,953,652
effective search space: 4072297968
effective search space used: 4072297968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Medicago: description of AC148359.7