BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148349.9 - phase: 0
(149 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204655 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 273 2e-74
TC204656 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 271 1e-73
TC215208 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 264 1e-71
TC215207 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 263 2e-71
TC204657 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein... 256 3e-69
TC222621 similar to UP|RS19_EMENI (P27073) 40S ribosomal protein... 141 1e-34
AI939206 126 4e-30
BM523721 weakly similar to SP|P40978|RS19_ 40S ribosomal protein... 116 3e-27
BU578880 similar to SP|Q9FNP8|R193_ 40S ribosomal protein S19-3.... 50 4e-07
TC228281 similar to UP|BIOB_ARATH (P54967) Biotin synthase (Bio... 28 2.1
TC217041 similar to UP|Q6IV45 (Q6IV45) Ferulate 5-hydroxylase, p... 27 4.7
TC229250 similar to UP|Q9AR00 (Q9AR00) PSTVd RNA-biding protein,... 27 4.7
TC211220 UP|Q84WK8 (Q84WK8) At3g14190, partial (6%) 26 8.0
>TC204655 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
complete
Length = 780
Score = 273 bits (699), Expect = 2e-74
Identities = 129/146 (88%), Positives = 144/146 (98%)
Frame = +3
Query: 1 MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
MA+++TVKDVSP EFV AYS+HLKRSGK+ELPEWTD+VKTA+FKELAPYDPDWYYVRAAS
Sbjct: 99 MATARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAAS 278
Query: 61 MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
MARKIY+RGGLGVG+FQRIYGGS+RNGSRPPHFCKSSGAIARHILQQL+NMN+IE+DTKG
Sbjct: 279 MARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIELDTKG 458
Query: 121 GRKITSSGRRDLDQVAGRILVAP*FV 146
GRKITSSGRRDLDQVAGRI+VAP*F+
Sbjct: 459 GRKITSSGRRDLDQVAGRIVVAP*FM 536
>TC204656 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
complete
Length = 767
Score = 271 bits (692), Expect = 1e-73
Identities = 127/145 (87%), Positives = 143/145 (98%)
Frame = +3
Query: 1 MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
MA+++TVKDVSP EFV AYS+HLKRSGK+ELPEWTD+VKTA+FKELAPYDPDWYYVRAAS
Sbjct: 93 MATARTVKDVSPHEFVKAYSSHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAAS 272
Query: 61 MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
MARKIY+RGGLGVG+FQRIYGGS+RNGSRPPHFCKSSGA+ARHILQQL+NM++IE+DTKG
Sbjct: 273 MARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAVARHILQQLQNMSIIELDTKG 452
Query: 121 GRKITSSGRRDLDQVAGRILVAP*F 145
GRKITSSGRRDLDQVAGRI+VAP*F
Sbjct: 453 GRKITSSGRRDLDQVAGRIVVAP*F 527
>TC215208 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
complete
Length = 906
Score = 264 bits (674), Expect = 1e-71
Identities = 123/142 (86%), Positives = 140/142 (97%)
Frame = +2
Query: 1 MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
MA+++TVKDVSP +FV AY++HLKRSGK+ELPEWTD+VKTAKFKELAPYDPDWYYVRAAS
Sbjct: 269 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAAS 448
Query: 61 MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
MARKIY+RGGLGVG+FQRIYGGS+RNGSRPPHFCKSSGAIARHILQQL+NM+++E+DTKG
Sbjct: 449 MARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIVEIDTKG 628
Query: 121 GRKITSSGRRDLDQVAGRILVA 142
GRKITSSGRRDLDQVAGRI+VA
Sbjct: 629 GRKITSSGRRDLDQVAGRIVVA 694
>TC215207 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
complete
Length = 714
Score = 263 bits (673), Expect = 2e-71
Identities = 122/142 (85%), Positives = 140/142 (97%)
Frame = +1
Query: 1 MASSKTVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAAS 60
MA+++TVKDVSP +FV AY++HLKRSGK+ELPEWTD+VKTAKFKELAPYDPDWYY+RAAS
Sbjct: 79 MATARTVKDVSPHDFVKAYASHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAAS 258
Query: 61 MARKIYVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKG 120
MARKIY+RGGLGVG+FQRIYGGS+RNGSRPPHFCKSSGAIARHILQQL+NM+++E+DTKG
Sbjct: 259 MARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIVEIDTKG 438
Query: 121 GRKITSSGRRDLDQVAGRILVA 142
GRKITSSGRRDLDQVAGRI+VA
Sbjct: 439 GRKITSSGRRDLDQVAGRIVVA 504
>TC204657 similar to UP|R191_ARATH (Q9SGA6) 40S ribosomal protein S19-1,
partial (94%)
Length = 675
Score = 256 bits (654), Expect = 3e-69
Identities = 122/138 (88%), Positives = 132/138 (95%)
Frame = +1
Query: 9 DVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKIYVR 68
DVSP EFV AYS KRSGK+ELPEWTD VKTA+FKELAPYDPDWYYVRAASMARKIY+R
Sbjct: 1 DVSPHEFVKAYSXXXKRSGKMELPEWTDXVKTARFKELAPYDPDWYYVRAASMARKIYLR 180
Query: 69 GGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKGGRKITSSG 128
GGLGVG+FQRIYGGS+RNGSRPPHFCKSSGAIARHILQQL+NMN+IE+DTKGGRKITSSG
Sbjct: 181 GGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIELDTKGGRKITSSG 360
Query: 129 RRDLDQVAGRILVAP*FV 146
RRDLDQVAGRI+VAP*F+
Sbjct: 361 RRDLDQVAGRIVVAP*FM 414
>TC222621 similar to UP|RS19_EMENI (P27073) 40S ribosomal protein S19 (S16),
complete
Length = 609
Score = 141 bits (356), Expect = 1e-34
Identities = 65/132 (49%), Positives = 94/132 (70%), Gaps = 1/132 (0%)
Frame = +3
Query: 6 TVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKI 65
+V+DV +F+NAY+A LKR GKL +P W+D VKT KEL P DWYY+RAA +AR I
Sbjct: 54 SVRDVQADKFINAYAAFLKRQGKLPIPGWSDTVKTGHLKELPPQSIDWYYIRAAVVARHI 233
Query: 66 YVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEM-DTKGGRKI 124
Y+R +G+G ++++GG++ GSRP H +SG++ R + Q L + ++E D KGGR+I
Sbjct: 234 YMRKTVGIGRLRKVHGGTKNRGSRPSHHVDASGSVDRKVCQSLAKIGVLENDDDKGGRRI 413
Query: 125 TSSGRRDLDQVA 136
T SG+RDLD++A
Sbjct: 414 TQSGQRDLDRIA 449
>AI939206
Length = 385
Score = 126 bits (316), Expect = 4e-30
Identities = 64/128 (50%), Positives = 90/128 (70%)
Frame = +2
Query: 12 PREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKIYVRGGL 71
P F+NA + LKRS ++LP +T ++K+A F EL PYDPD Y++ AAS++ IY+ G L
Sbjct: 2 PHHFLNASPSLLKRSLMIQLP*YTHILKSAVFIELTPYDPDCYFISAASIS*LIYLTGCL 181
Query: 72 GVGSFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLENMNLIEMDTKGGRKITSSGRRD 131
V +F IY G + +RPPHFC S A+ RHIL Q ++++++D+KGGRKI+SSGR
Sbjct: 182 RVCAFHWIYLGLILDVTRPPHFCHCSAAVVRHILLQSHTLSIVDIDSKGGRKISSSGRMH 361
Query: 132 LDQVAGRI 139
LDQ+A RI
Sbjct: 362 LDQLAERI 385
>BM523721 weakly similar to SP|P40978|RS19_ 40S ribosomal protein S19. [Rice]
{Oryza sativa}, partial (56%)
Length = 431
Score = 116 bits (291), Expect = 3e-27
Identities = 54/95 (56%), Positives = 69/95 (71%)
Frame = +1
Query: 6 TVKDVSPREFVNAYSAHLKRSGKLELPEWTDLVKTAKFKELAPYDPDWYYVRAASMARKI 65
TVKDVS F+ Y+AHLK++GKL LP+W D KTA KEL P DP+W YVRAAS+ARK+
Sbjct: 142 TVKDVSAEAFIREYAAHLKKAGKLRLPKWVDYAKTAVSKELPPLDPNWLYVRAASIARKL 321
Query: 66 YVRGGLGVGSFQRIYGGSQRNGSRPPHFCKSSGAI 100
Y+R G+G+G+F+RIYG +R G P SG+I
Sbjct: 322 YLRSGIGLGTFKRIYGFRERRGVMPRRSRDGSGSI 426
>BU578880 similar to SP|Q9FNP8|R193_ 40S ribosomal protein S19-3. [Mouse-ear
cress] {Arabidopsis thaliana}, partial (19%)
Length = 424
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +1
Query: 1 MASSKTVKDVSPREFVNAYSAHLKRSGKLEL 31
MA+++TVKDVSP EFV AYS+HLKRSGK+ L
Sbjct: 79 MATARTVKDVSPHEFVKAYSSHLKRSGKVIL 171
>TC228281 similar to UP|BIOB_ARATH (P54967) Biotin synthase (Biotin
synthetase) , partial (39%)
Length = 677
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 70 GLGVGSFQRIYGGSQRNGSRPPH 92
G+ +G QR GGS NGSR H
Sbjct: 241 GICIGRVQRPKGGSSENGSRQKH 173
>TC217041 similar to UP|Q6IV45 (Q6IV45) Ferulate 5-hydroxylase, partial (92%)
Length = 1857
Score = 26.6 bits (57), Expect = 4.7
Identities = 15/47 (31%), Positives = 22/47 (45%), Gaps = 6/47 (12%)
Frame = -2
Query: 5 KTVKDVSPREFVNAYSAHLKRSGKLELPEWTDL------VKTAKFKE 45
+ VK +S R+F H +G PEW +L + A+FKE
Sbjct: 1499 EAVKKMSHRQFKRVEPQHHSGAGSSTRPEWNELEVAPLEIGHARFKE 1359
>TC229250 similar to UP|Q9AR00 (Q9AR00) PSTVd RNA-biding protein, Virp1
(PSTVd RNA-binding protein Virp1a) (PSTVd RNA-binding
protein Virp1b) (PSTVd RNA-binding protein Virp1c)
(PSTVd RNA-binding protein Virp1d), partial (34%)
Length = 1450
Score = 26.6 bits (57), Expect = 4.7
Identities = 24/105 (22%), Positives = 42/105 (39%), Gaps = 19/105 (18%)
Frame = -2
Query: 13 REFVNAYSAHLKRSGKLELPEWTDLVKTAKFK--ELAPYDPDWYYVRAASMARKIYVRGG 70
R F+ + S+ L L++ W + + + E A D DW ++ A++ ++ + G
Sbjct: 471 RRFLKSLSSFLVHEATLKVTYWE*VAASFDLRLIEEASSDADWVFLPFANLGLELGLGLG 292
Query: 71 L-----------------GVGSFQRIYGGSQRNGSRPPHFCKSSG 98
L +GSF+ RN RP F + SG
Sbjct: 291 LEKGTFPMNPAPPLLCRGQLGSFR*AEAMKMRNHDRPVRFRRLSG 157
>TC211220 UP|Q84WK8 (Q84WK8) At3g14190, partial (6%)
Length = 715
Score = 25.8 bits (55), Expect = 8.0
Identities = 11/36 (30%), Positives = 21/36 (57%)
Frame = +2
Query: 103 HILQQLENMNLIEMDTKGGRKITSSGRRDLDQVAGR 138
H++ + EN+NL T + ++G++D +AGR
Sbjct: 158 HLIIKDENLNLHSKKTTKSKNSKTNGKKDGSGIAGR 265
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,540,744
Number of Sequences: 63676
Number of extensions: 64462
Number of successful extensions: 289
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of query: 149
length of database: 12,639,632
effective HSP length: 89
effective length of query: 60
effective length of database: 6,972,468
effective search space: 418348080
effective search space used: 418348080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148349.9