BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148342.20 - phase: 0
(129 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203528 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 95 8e-21
TC224570 UP|Q41067 (Q41067) Polyubiquitin, partial (31%) 94 2e-20
BG839346 homologue to GP|1143188|gb|A ubiquitin precursor {Candi... 94 2e-20
TC214561 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric p... 92 5e-20
TC203313 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana... 92 5e-20
TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 92 7e-20
TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 92 7e-20
TC203967 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 91 1e-19
TC203966 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension pro... 91 1e-19
TC224825 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein... 91 1e-19
TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%) 91 1e-19
TC214518 similar to UP|O49976 (O49976) Ubiquitin (Fragment), par... 91 1e-19
TC224828 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein... 91 1e-19
TC203627 UP|Q41067 (Q41067) Polyubiquitin, partial (47%) 91 1e-19
TC203625 UP|Q39257 (Q39257) Ubiquitin, partial (83%) 91 1e-19
TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 91 1e-19
TC203374 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 91 2e-19
TC214460 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 91 2e-19
TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 91 2e-19
CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana... 91 2e-19
>TC203528 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (23%)
Length = 914
Score = 95.1 bits (235), Expect = 8e-21
Identities = 51/83 (61%), Positives = 61/83 (73%)
Frame = +3
Query: 46 VLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDG 105
++L ++ QMQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+
Sbjct: 627 MVLFVIEQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 806
Query: 106 NRTLADYNVTKESTLHLVLRLLG 128
RTLADYN+ KESTLHLVLRL G
Sbjct: 807 GRTLADYNIQKESTLHLVLRLRG 875
>TC224570 UP|Q41067 (Q41067) Polyubiquitin, partial (31%)
Length = 909
Score = 94.0 bits (232), Expect = 2e-20
Identities = 54/89 (60%), Positives = 62/89 (68%)
Frame = +2
Query: 40 LKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFA 99
LK+ I+L V MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA
Sbjct: 2 LKYLSIIL---VFNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 172
Query: 100 RMQLDGNRTLADYNVTKESTLHLVLRLLG 128
QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 173 GKQLEDGRTLADYNIQKESTLHLVLRLRG 259
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +2
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 440 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 619
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 620 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 715
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +2
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 391
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 392 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 487
>BG839346 homologue to GP|1143188|gb|A ubiquitin precursor {Candida
albicans}, partial (33%)
Length = 667
Score = 94.0 bits (232), Expect = 2e-20
Identities = 52/84 (61%), Positives = 60/84 (70%)
Frame = +1
Query: 45 IVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLD 104
I+L + V MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+
Sbjct: 217 ILLTVLYV*MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 396
Query: 105 GNRTLADYNVTKESTLHLVLRLLG 128
RTLADYN+ KESTLHLVLRL G
Sbjct: 397 DGRTLADYNIQKESTLHLVLRLRG 468
>TC214561 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin
{Nicotiana sylvestris;} , partial (45%)
Length = 1164
Score = 92.4 bits (228), Expect = 5e-20
Identities = 52/84 (61%), Positives = 59/84 (69%)
Frame = +1
Query: 45 IVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLD 104
I L + QMQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+
Sbjct: 631 IYL*LLTRQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 810
Query: 105 GNRTLADYNVTKESTLHLVLRLLG 128
RTLADYN+ KESTLHLVLRL G
Sbjct: 811 DGRTLADYNIQKESTLHLVLRLRG 882
Score = 70.9 bits (172), Expect = 2e-13
Identities = 45/92 (48%), Positives = 56/92 (59%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFV L GKT TL+V+SS I I + DGI QRL
Sbjct: 835 NIQKESTLHLVLRLRGGMQIFV*TLTGKTITLEVESSDTIDNFMAKIQDKDGILSDQQRL 1014
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFAR QL+ RTL+DY++ E TLHLVL L G
Sbjct: 1015IFAR*QLEDCRTLSDYDIQNEFTLHLVLLLRG 1110
>TC203313 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana
{Arabidopsis thaliana;} , complete
Length = 1377
Score = 92.4 bits (228), Expect = 5e-20
Identities = 49/81 (60%), Positives = 60/81 (73%)
Frame = +1
Query: 48 LAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNR 107
+ ++++MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ R
Sbjct: 43 ILLLLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 222
Query: 108 TLADYNVTKESTLHLVLRLLG 128
TLADYN+ KESTLHLVLRL G
Sbjct: 223 TLADYNIQKESTLHLVLRLRG 285
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 694 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 873
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 874 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 969
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 922 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1101
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1102 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 1197
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 466 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 645
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 646 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 741
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 238 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 417
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 418 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 513
>TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 1040
Score = 92.0 bits (227), Expect = 7e-20
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +1
Query: 46 VLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDG 105
+L +++ MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+
Sbjct: 130 LLPSLINNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 309
Query: 106 NRTLADYNVTKESTLHLVLRLLG 128
RTLADYN+ KESTLHLVLRL G
Sbjct: 310 GRTLADYNIQKESTLHLVLRLRG 378
Score = 57.4 bits (137), Expect = 2e-09
Identities = 31/73 (42%), Positives = 44/73 (59%)
Frame = +1
Query: 56 IFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVT 115
I VK L GK + ++ + I ++KE + E +GIP QRLI+A QL ++T +YN+
Sbjct: 388 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIE 567
Query: 116 KESTLHLVLRLLG 128
S LHLVL L G
Sbjct: 568 GGSVLHLVLALRG 606
>TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 833
Score = 92.0 bits (227), Expect = 7e-20
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +2
Query: 48 LAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNR 107
L+++ MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ R
Sbjct: 47 LSLLNNMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 226
Query: 108 TLADYNVTKESTLHLVLRLLG 128
TLADYN+ KESTLHLVLRL G
Sbjct: 227 TLADYNIQKESTLHLVLRLRG 289
Score = 57.4 bits (137), Expect = 2e-09
Identities = 31/73 (42%), Positives = 44/73 (59%)
Frame = +2
Query: 56 IFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVT 115
I VK L GK + ++ + I ++KE + E +GIP QRLI+A QL ++T +YN+
Sbjct: 299 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIE 478
Query: 116 KESTLHLVLRLLG 128
S LHLVL L G
Sbjct: 479 GGSVLHLVLALRG 517
>TC203967 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (98%)
Length = 746
Score = 91.3 bits (225), Expect = 1e-19
Identities = 50/77 (64%), Positives = 56/77 (71%)
Frame = +3
Query: 52 VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLAD 111
V MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLAD
Sbjct: 63 VTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 242
Query: 112 YNVTKESTLHLVLRLLG 128
YN+ KESTLHLVLRL G
Sbjct: 243 YNIQKESTLHLVLRLRG 293
>TC203966 homologue to UP|Q6UCJ3 (Q6UCJ3) Ubiquitin extension protein,
partial (98%)
Length = 715
Score = 91.3 bits (225), Expect = 1e-19
Identities = 50/77 (64%), Positives = 56/77 (71%)
Frame = +2
Query: 52 VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLAD 111
V MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLAD
Sbjct: 119 VTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 298
Query: 112 YNVTKESTLHLVLRLLG 128
YN+ KESTLHLVLRL G
Sbjct: 299 YNIQKESTLHLVLRLRG 349
>TC224825 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein L40,
complete
Length = 651
Score = 90.9 bits (224), Expect = 1e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = +3
Query: 52 VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLAD 111
++MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLAD
Sbjct: 39 LKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 218
Query: 112 YNVTKESTLHLVLRLLG 128
YN+ KESTLHLVLRL G
Sbjct: 219 YNIQKESTLHLVLRLRG 269
>TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%)
Length = 732
Score = 90.9 bits (224), Expect = 1e-19
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +3
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 57 KMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 236
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 237 NIQKESTLHLVLRLRG 284
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 237 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 416
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 417 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 512
Score = 87.4 bits (215), Expect = 2e-18
Identities = 50/89 (56%), Positives = 60/89 (67%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 465 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 644
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLR 125
IFA QL+ RTLADYN+ KESTLHLVLR
Sbjct: 645 IFAGKQLEDGRTLADYNIQKESTLHLVLR 731
>TC214518 similar to UP|O49976 (O49976) Ubiquitin (Fragment), partial (55%)
Length = 967
Score = 90.9 bits (224), Expect = 1e-19
Identities = 47/76 (61%), Positives = 58/76 (75%)
Frame = +2
Query: 51 VVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLA 110
+ QMQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFAR QL+ ++TLA
Sbjct: 446 IAQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFARKQLEDSQTLA 625
Query: 111 DYNVTKESTLHLVLRL 126
+YN+ KESTLHL+LRL
Sbjct: 626 NYNIQKESTLHLILRL 673
Score = 72.8 bits (177), Expect = 4e-14
Identities = 42/90 (46%), Positives = 54/90 (59%)
Frame = +2
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIF+K L GKT TL+V+SS I ++ I IP QRL
Sbjct: 632 NIQKESTLHLILRLRSGMQIFIKTLTGKTITLEVESSDTINNIETKIRNEKRIPPDQQRL 811
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRL 126
IFA QL TLA YN+ ++STLHL LRL
Sbjct: 812 IFAEKQLXNKHTLAXYNIQRKSTLHLXLRL 901
>TC224828 UP|Q9AR09 (Q9AR09) Ubiquitin fused to ribosomal protein L40,
complete
Length = 1196
Score = 90.9 bits (224), Expect = 1e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = +3
Query: 52 VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLAD 111
++MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLAD
Sbjct: 522 LKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 701
Query: 112 YNVTKESTLHLVLRLLG 128
YN+ KESTLHLVLRL G
Sbjct: 702 YNIQKESTLHLVLRLRG 752
>TC203627 UP|Q41067 (Q41067) Polyubiquitin, partial (47%)
Length = 1191
Score = 90.9 bits (224), Expect = 1e-19
Identities = 49/76 (64%), Positives = 56/76 (73%)
Frame = +3
Query: 53 QMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADY 112
+MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADY
Sbjct: 84 KMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 263
Query: 113 NVTKESTLHLVLRLLG 128
N+ KESTLHLVLRL G
Sbjct: 264 NIQKESTLHLVLRLRG 311
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 720 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 899
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 900 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 995
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 492 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 671
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 672 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 767
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 264 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 443
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 444 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 539
Score = 30.8 bits (68), Expect = 0.18
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 51 VVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLA 110
VV + K L GKT TL + + ++ F+ + + FA QL+ RTLA
Sbjct: 991 VVACKSLSKTLTGKTITL*GGELLTLLTMSKLRFKTKKVSTRPTEANFAGKQLENGRTLA 1170
Query: 111 DYNVTK 116
DY +
Sbjct: 1171 DYTFXR 1188
>TC203625 UP|Q39257 (Q39257) Ubiquitin, partial (83%)
Length = 1427
Score = 90.9 bits (224), Expect = 1e-19
Identities = 49/77 (63%), Positives = 57/77 (73%)
Frame = +3
Query: 52 VQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLAD 111
++MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLAD
Sbjct: 78 LKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 257
Query: 112 YNVTKESTLHLVLRLLG 128
YN+ KESTLHLVLRL G
Sbjct: 258 YNIQKESTLHLVLRLRG 308
Score = 90.9 bits (224), Expect = 1e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 945 NIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1124
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1125 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 1220
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 717 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 896
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 897 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 992
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 489 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 668
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 669 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 764
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +3
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 261 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 440
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 441 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 536
>TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (76%)
Length = 911
Score = 90.9 bits (224), Expect = 1e-19
Identities = 51/81 (62%), Positives = 58/81 (70%)
Frame = +1
Query: 48 LAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNR 107
LA +MQIFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ R
Sbjct: 31 LAHRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 210
Query: 108 TLADYNVTKESTLHLVLRLLG 128
TLADYN+ KESTLHLVLRL G
Sbjct: 211 TLADYNIQKESTLHLVLRLRG 273
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 226 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 405
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 406 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 501
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 454 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 633
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 634 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 729
Score = 66.6 bits (161), Expect = 3e-12
Identities = 39/76 (51%), Positives = 48/76 (62%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 682 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGIPPDQQRL 861
Query: 97 IFARMQLDGNRTLADY 112
IFA QL+ RTLADY
Sbjct: 862 IFAGKQLEDGRTLADY 909
>TC203374 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (40%)
Length = 654
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 172 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 351
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 352 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 447
Score = 86.3 bits (212), Expect = 4e-18
Identities = 47/73 (64%), Positives = 53/73 (72%)
Frame = +1
Query: 56 IFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVT 115
IFVK L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN+
Sbjct: 1 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 180
Query: 116 KESTLHLVLRLLG 128
KESTLHLVLRL G
Sbjct: 181 KESTLHLVLRLRG 219
>TC214460 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 851
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 268 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 447
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 448 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 543
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 40 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 219
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 220 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 315
Score = 45.1 bits (105), Expect = 9e-06
Identities = 21/27 (77%), Positives = 23/27 (84%)
Frame = +1
Query: 102 QLDGNRTLADYNVTKESTLHLVLRLLG 128
QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 7 QLEDGRTLADYNIQKESTLHLVLRLRG 87
>TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (42%)
Length = 482
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 52 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 231
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 232 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 327
Score = 53.5 bits (127), Expect = 3e-08
Identities = 33/67 (49%), Positives = 41/67 (60%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 280 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 459
Query: 97 IFARMQL 103
IFA QL
Sbjct: 460 IFAGKQL 480
Score = 50.8 bits (120), Expect = 2e-07
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +1
Query: 96 LIFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
LIFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 99
>CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana}, partial
(38%)
Length = 618
Score = 90.5 bits (223), Expect = 2e-19
Identities = 52/92 (56%), Positives = 62/92 (66%)
Frame = +1
Query: 37 NISLKFCCIVLLAIVVQMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRL 96
NI + ++L + MQIFVK L GKT TL+V+SS I VK I + +GIP QRL
Sbjct: 244 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423
Query: 97 IFARMQLDGNRTLADYNVTKESTLHLVLRLLG 128
IFA QL+ RTLADYN+ KESTLHLVLRL G
Sbjct: 424 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 519
Score = 79.7 bits (195), Expect = 3e-16
Identities = 43/68 (63%), Positives = 49/68 (71%)
Frame = +1
Query: 61 LDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTL 120
L GKT TL+V+SS I VK I + +GIP QRLIFA QL+ RTLADYN+ KESTL
Sbjct: 88 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 267
Query: 121 HLVLRLLG 128
HLVLRL G
Sbjct: 268 HLVLRLRG 291
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.330 0.145 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,630,666
Number of Sequences: 63676
Number of extensions: 52357
Number of successful extensions: 835
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of query: 129
length of database: 12,639,632
effective HSP length: 86
effective length of query: 43
effective length of database: 7,163,496
effective search space: 308030328
effective search space used: 308030328
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)
Medicago: description of AC148342.20