BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148342.16 - phase: 0 /pseudo
(138 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224594 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana... 114 1e-26
TC203627 UP|Q41067 (Q41067) Polyubiquitin, partial (47%) 114 1e-26
TC224570 UP|Q41067 (Q41067) Polyubiquitin, partial (31%) 114 1e-26
TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%) 114 1e-26
TC203625 UP|Q39257 (Q39257) Ubiquitin, partial (83%) 114 1e-26
TC203313 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana... 114 1e-26
TC214459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC225522 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC203459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC203458 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC214460 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC225521 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 114 1e-26
TC203374 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 110 2e-25
CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana... 106 4e-24
TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 102 8e-23
TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete 102 8e-23
TC214518 similar to UP|O49976 (O49976) Ubiquitin (Fragment), par... 98 1e-21
TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ... 96 5e-21
TC214561 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric p... 94 2e-20
>TC224594 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (80%)
Length = 1156
Score = 114 bits (286), Expect = 1e-26
Identities = 72/154 (46%), Positives = 91/154 (58%), Gaps = 16/154 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 530 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 706
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 707 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 886
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLREVD 138
F GK ++D +TL +YNI + L LV LR D
Sbjct: 887 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 988
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 302 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 478
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 479 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 658
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 659 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 751
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 74 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 250
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 251 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 430
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 431 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 523
>TC203627 UP|Q41067 (Q41067) Polyubiquitin, partial (47%)
Length = 1191
Score = 114 bits (286), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 87 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 263
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 264 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 443
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 444 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 536
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 543 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 719
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 720 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 899
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 900 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 992
Score = 33.9 bits (76), Expect = 0.025
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEG 36
MQIF+K + PL ++ DTI +VK KI DKEG
Sbjct: 999 MQIFVKDPHWKDHHPLRWRALDTIDNVKAKIQDKEG 1106
>TC224570 UP|Q41067 (Q41067) Polyubiquitin, partial (31%)
Length = 909
Score = 114 bits (286), Expect = 1e-26
Identities = 72/154 (46%), Positives = 91/154 (58%), Gaps = 16/154 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 263 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 439
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 440 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 619
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLREVD 138
F GK ++D +TL +YNI + L LV LR D
Sbjct: 620 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGD 721
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 35 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 212 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 391
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 392 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 484
>TC203571 UP|Q41067 (Q41067) Polyubiquitin, partial (29%)
Length = 732
Score = 114 bits (286), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 60 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 236
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 237 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 416
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 417 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 509
Score = 112 bits (279), Expect = 7e-26
Identities = 69/147 (46%), Positives = 88/147 (58%), Gaps = 16/147 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 288 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 464
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 465 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 644
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLV 131
F GK ++D +TL +YNI + L LV
Sbjct: 645 IFAGKQLEDGRTLADYNIQKESTLHLV 725
>TC203625 UP|Q39257 (Q39257) Ubiquitin, partial (83%)
Length = 1427
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 540 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 716
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 717 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 896
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 897 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 989
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 768 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 944
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 945 NIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1124
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 1125IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 1217
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 84 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 260
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 261 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 440
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 441 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 533
>TC203313 PIR|S01425|UQMUM polyubiquitin 5 - Arabidopsis thaliana
{Arabidopsis thaliana;} , complete
Length = 1377
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 289 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 465
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 466 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 645
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 646 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 738
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 517 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 693
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 694 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 873
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 874 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 966
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 745 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 921
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 922 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 1101
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 1102IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 1194
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 61 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 237
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 238 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 417
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 418 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 510
>TC214459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (81%)
Length = 1470
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 543 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 719
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 720 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 899
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 900 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 992
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 87 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 263
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 264 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 443
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 444 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 536
>TC225522 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (50%)
Length = 639
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 141 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 317
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 318 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 497
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 498 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 590
Score = 62.8 bits (151), Expect = 5e-11
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Frame = +3
Query: 38 PVHQQRLFFDGKPI-KDRQTLANYNIPENSTIDTRSIAKRSRPLF--------------- 81
P QQRL + + +TLA+YNI + ST+ + +F
Sbjct: 18 PRDQQRLILRRESSSRXGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES 197
Query: 82 -NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 198 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 362
>TC203459 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (53%)
Length = 860
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 146 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 322
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 323 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 502
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 503 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 595
Score = 92.0 bits (227), Expect = 8e-20
Identities = 55/122 (45%), Positives = 70/122 (57%), Gaps = 16/122 (13%)
Frame = +2
Query: 30 KIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF-------- 81
KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+ + +F
Sbjct: 2 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 181
Query: 82 --------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRS 133
+TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI + L LV
Sbjct: 182 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 361
Query: 134 LR 135
LR
Sbjct: 362 LR 367
>TC203458 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (56%)
Length = 1048
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +3
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 183 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 359
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 360 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 539
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 540 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 632
Score = 101 bits (251), Expect = 1e-22
Identities = 61/131 (46%), Positives = 77/131 (58%), Gaps = 16/131 (12%)
Frame = +3
Query: 21 SDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPL 80
SDTI +VK KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+ + +
Sbjct: 12 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 191
Query: 81 F----------------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPR 124
F +TI +VK KI DKEGIP QQRL F GK ++D +TL +YNI +
Sbjct: 192 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 371
Query: 125 TQPLTLVRSLR 135
L LV LR
Sbjct: 372 ESTLHLVLRLR 404
>TC214460 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (49%)
Length = 851
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 91 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 267
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 268 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 447
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 448 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 540
Score = 68.2 bits (165), Expect = 1e-12
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 16/104 (15%)
Frame = +1
Query: 48 GKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKI 91
GK ++D +TLA+YNI + ST+ + +F +TI +VK KI
Sbjct: 1 GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI 180
Query: 92 HDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 181 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 312
>TC203465 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (76%)
Length = 911
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 277 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 453
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 454 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 633
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 634 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 726
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 49 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 225
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 226 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 405
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 406 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 498
Score = 107 bits (268), Expect = 1e-24
Identities = 65/136 (47%), Positives = 83/136 (60%), Gaps = 16/136 (11%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 505 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 681
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KIHDKEGIP QQRL
Sbjct: 682 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIHDKEGIPPDQQRL 861
Query: 105 FFDGKPIKDRQTLTNY 120
F GK ++D +TL +Y
Sbjct: 862 IFAGKQLEDGRTLADY 909
>TC225521 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (81%)
Length = 1405
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 497 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 673
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 674 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 853
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 854 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 946
Score = 114 bits (285), Expect = 1e-26
Identities = 71/151 (47%), Positives = 90/151 (59%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 41 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 217
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 218 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 397
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F GK ++D +TL +YNI + L LV LR
Sbjct: 398 IFAGKQLEDGRTLADYNIQKESTLHLVLRLR 490
>TC203374 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (40%)
Length = 654
Score = 110 bits (275), Expect = 2e-25
Identities = 69/149 (46%), Positives = 88/149 (58%), Gaps = 16/149 (10%)
Frame = +1
Query: 3 IFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNI 62
IF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+YNI
Sbjct: 1 IFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 177
Query: 63 PENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRLFF 106
+ ST+ + +F +TI +VK KI DKEGIP QQRL F
Sbjct: 178 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 357
Query: 107 DGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
GK ++D +TL +YNI + L LV LR
Sbjct: 358 AGKQLEDGRTLADYNIQKESTLHLVLRLR 444
Score = 73.9 bits (180), Expect = 2e-14
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 223 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 399
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 400 NIQKESTL 423
>CA851404 GP|15982787|g AT4g05320/C17L7_240 {Arabidopsis thaliana}, partial
(38%)
Length = 618
Score = 106 bits (264), Expect = 4e-24
Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 16/140 (11%)
Frame = +1
Query: 12 KMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANYNIPENSTIDTR 71
K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+YNI + ST+
Sbjct: 97 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 276
Query: 72 SIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQ 115
+ +F +TI +VK KI DKEGIP QQRL F GK ++D +
Sbjct: 277 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 456
Query: 116 TLTNYNIPRTQPLTLVRSLR 135
TL +YNI + L LV LR
Sbjct: 457 TLADYNIQKESTLHLVLRLR 516
Score = 73.9 bits (180), Expect = 2e-14
Identities = 40/68 (58%), Positives = 50/68 (72%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 295 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 471
Query: 61 NIPENSTI 68
NI + ST+
Sbjct: 472 NIQKESTL 495
>TC203381 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 833
Score = 102 bits (253), Expect = 8e-23
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 16/151 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 65 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 241
Query: 61 NIPENST------------IDTRSIAKRSRPL----FNTILDVKKKIHDKEGIPVHQQRL 104
NI + ST I +++ + + +TI +K+++ +KEGIP QQRL
Sbjct: 242 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRL 421
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+ GK + D +T YNI L LV +LR
Sbjct: 422 IYAGKQLADDKTAKEYNIEGGSVLHLVLALR 514
>TC203502 homologue to UP|Q8LPV5 (Q8LPV5) Polyubiquitin 2, complete
Length = 1040
Score = 102 bits (253), Expect = 8e-23
Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 154 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 330
Query: 61 NIPENST------------IDTRSIAKRSRPL----FNTILDVKKKIHDKEGIPVHQQRL 104
NI + ST I +++ + + +TI +K+++ +KEGIP QQRL
Sbjct: 331 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRL 510
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+ GK + D +T YNI L LV +LR
Sbjct: 511 IYAGKQLADDKTAKEYNIEGGSVLHLVLALR 603
>TC214518 similar to UP|O49976 (O49976) Ubiquitin (Fragment), partial (55%)
Length = 967
Score = 97.8 bits (242), Expect = 1e-21
Identities = 62/146 (42%), Positives = 82/146 (55%), Gaps = 16/146 (10%)
Frame = +2
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F K ++D QTLANY
Sbjct: 455 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFARKQLEDSQTLANY 631
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +++ KI +++ IP QQRL
Sbjct: 632 NIQKESTLHLILRLRSGMQIFIKTLTGKTITLEVESSDTINNIETKIRNEKRIPPDQQRL 811
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTL 130
F K + ++ TL YNI R L L
Sbjct: 812 IFAEKQLXNKHTLAXYNIQRKSTLHL 889
Score = 57.8 bits (138), Expect = 2e-09
Identities = 30/54 (55%), Positives = 36/54 (66%)
Frame = +2
Query: 82 NTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
+TI +VK KI DKEGIP QQRL F K ++D QTL NYNI + L L+ LR
Sbjct: 515 DTIDNVKAKIQDKEGIPPDQQRLIFARKQLEDSQTLANYNIQKESTLHLILRLR 676
>TC203874 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
sylvestris;} , partial (42%)
Length = 482
Score = 95.9 bits (237), Expect = 5e-21
Identities = 60/127 (47%), Positives = 75/127 (58%), Gaps = 16/127 (12%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 103 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 279
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI +VK KI DKEGIP QQRL
Sbjct: 280 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 459
Query: 105 FFDGKPI 111
F GK +
Sbjct: 460 IFAGKQL 480
Score = 71.2 bits (173), Expect = 1e-13
Identities = 44/108 (40%), Positives = 59/108 (53%), Gaps = 16/108 (14%)
Frame = +1
Query: 44 LFFDGKPIKDRQTLANYNIPENSTIDTRSIAKRSRPLF----------------NTILDV 87
L F GK ++D +TLA+YNI + ST+ + +F +TI +V
Sbjct: 1 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 180
Query: 88 KKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
K KI DKEGIP QQRL F GK ++D +TL +YNI + L LV LR
Sbjct: 181 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 324
>TC214561 homologue to GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin
{Nicotiana sylvestris;} , partial (45%)
Length = 1164
Score = 94.4 bits (233), Expect = 2e-20
Identities = 64/151 (42%), Positives = 85/151 (55%), Gaps = 16/151 (10%)
Frame = +1
Query: 1 MQIFIKIMYGNKMFPLIVKSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLANY 60
MQIF+K + G K L V+SSDTI +VK KI DKEGIP QQRL F GK ++D +TLA+Y
Sbjct: 658 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 834
Query: 61 NIPENSTIDTRSIAKRSRPLF----------------NTILDVKKKIHDKEGIPVHQQRL 104
NI + ST+ + +F +TI + KI DK+GI QQRL
Sbjct: 835 NIQKESTLHLVLRLRGGMQIFV*TLTGKTITLEVESSDTIDNFMAKIQDKDGILSDQQRL 1014
Query: 105 FFDGKPIKDRQTLTNYNIPRTQPLTLVRSLR 135
F ++D +TL++Y+I L LV LR
Sbjct: 1015IFAR*QLEDCRTLSDYDIQNEFTLHLVLLLR 1107
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.141 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,098,417
Number of Sequences: 63676
Number of extensions: 60815
Number of successful extensions: 628
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of query: 138
length of database: 12,639,632
effective HSP length: 87
effective length of query: 51
effective length of database: 7,099,820
effective search space: 362090820
effective search space used: 362090820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148342.16