BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148291.6 - phase: 0
(1161 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NP395547 reverse transcriptase [Glycine max] 282 7e-76
NP395548 reverse transcriptase [Glycine max] 277 2e-74
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 178 1e-44
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 104 2e-43
NP595172 polyprotein [Glycine max] 164 2e-40
BI321666 157 2e-38
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 132 7e-31
TC232398 92 1e-30
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 129 7e-30
BQ133845 122 7e-28
NP334778 reverse transcriptase [Glycine max] 115 9e-26
CF922488 114 3e-25
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 91 3e-18
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 80 5e-15
BE802896 77 3e-14
BI316922 75 1e-13
AW184779 52 9e-12
TC206741 62 1e-09
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 50 4e-06
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%) 50 7e-06
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 282 bits (721), Expect = 7e-76
Identities = 133/163 (81%), Positives = 145/163 (88%)
Frame = +1
Query: 438 VKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDY 497
V+KEV KLL AG+IYPISDSSWVSPV VVPKKGGMTVV ND+NELIPTR VT WRMCIDY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 498 RRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGV 557
R+LN ATRKDH+PLPFMDQM++RLA Q+FY FLDGYS YNQIAV P+DQEKTAFTCPF V
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 558 FAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAF 600
FAYRRMPFGLC A TFQRCM++IF DM+EK IEVFMDDFS F
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFF 489
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 277 bits (708), Expect = 2e-74
Identities = 127/164 (77%), Positives = 145/164 (87%)
Frame = +1
Query: 438 VKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGGMTVVANDKNELIPTRTVTGWRMCIDY 497
V+KEVLKLL G+IYPISDS+WVSPV VV KK GMTV+ N+KN+LIPTRTVT W++CIDY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 498 RRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFTCPFGV 557
R+LN ATRKDHFPLPFMDQM+ERLAG A+YCFLD Y YNQI V P+DQEK AFTCPFGV
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 558 FAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSAFV 601
FAYRR+PFGLC AP TFQ CML+IF+D++EK+IEVFMDDFS FV
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFV 492
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 178 bits (452), Expect = 1e-44
Identities = 77/122 (63%), Positives = 103/122 (84%)
Frame = -3
Query: 942 VLKKYNIRHKVATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAF 1001
+LKKY + H+V+TPYHPQT+ Q E+SNR++K+ILEK + +RKDWS +LDDALWA+RTA+
Sbjct: 367 LLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAY 188
Query: 1002 KTHLGFSPYQLVYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAY 1061
K +G SPY++V+GKACHLPVE+EHKAYWA+K NF AG++R L+L+EL+E+RL AY
Sbjct: 187 KAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRLEAY 8
Query: 1062 EN 1063
EN
Sbjct: 7 EN 2
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 104 bits (260), Expect(2) = 2e-43
Identities = 45/63 (71%), Positives = 55/63 (86%)
Frame = +2
Query: 976 EKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVELEHKAYWAIKAL 1035
EK +AS+RKDWS KL+DALWA +TA KT +G +P+Q+VY KACHLPVEL+HKAYWA+K L
Sbjct: 224 EKNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELKHKAYWAMKCL 403
Query: 1036 NFD 1038
NFD
Sbjct: 404 NFD 412
Score = 91.3 bits (225), Expect(2) = 2e-43
Identities = 42/66 (63%), Positives = 51/66 (76%)
Frame = +3
Query: 903 NDAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSA 962
NDAK V+ FL+KNIF+RFG PR+LISDGG HF + L VLK ++RHKV T YHPQT+
Sbjct: 3 NDAKIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNG 182
Query: 963 QVEVSN 968
Q +VSN
Sbjct: 183 QAKVSN 200
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 164 bits (415), Expect = 2e-40
Identities = 157/582 (26%), Positives = 252/582 (42%), Gaps = 23/582 (3%)
Frame = +1
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VLGQ H I Y SK L + +ELLA+ AL KFR YL+G+K I+ TD
Sbjct: 2716 VLGQNG----HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQR 2883
Query: 661 ALKYLLTKGDSKPRLLRWILLLQEFDLEIRDKKGVENVVADHLSRLDNKEVTKKKGAIMA 720
+LK L+ + P W+ +D +I K G +N AD LSR+ ++ +
Sbjct: 2884 SLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLE 3063
Query: 721 EFPDEKLFAIGERPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTD 780
E + I + M +K G DA+HY + L+
Sbjct: 3064 EL---RARLISDPHLKQLMETYKQG----------------ADASHYTVREGLLYWKD-- 3180
Query: 781 GLMRRCVAGEE--AHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARC 838
R + EE + I+ HSS GGH RT A+ L++ F+WP + +D ++ +C
Sbjct: 3181 ---RVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLAR-LKAQFYWPKMQEDVKAYIQKC 3348
Query: 839 DKCQRTGSISKRNEMPLTGIIEVEPF--DCW---GIDFMGPFPSSYSFLHILVCVDYVTK 893
CQ+ S N +P G+++ P W +DF+ P+S+ I+V +D +TK
Sbjct: 3349 LICQQAKS---NNTLP-AGLLQPLPIPQQVWEDVAMDFITGLPNSFGLSVIMVVIDRLTK 3516
Query: 894 WVEAIPCVAN-DAKTVVSFLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKV 952
+ IP A+ ++K V +I G PR ++SD + F + +++ K +
Sbjct: 3517 YAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGTTLAM 3696
Query: 953 ATPYHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQL 1012
++ YHPQ+ Q EV N+ L+ L + K W K L A + Y TA+ LG +P++
Sbjct: 3697 SSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRA 3876
Query: 1013 VYGKACHLPVELEHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTK 1072
+YG+ P L +A + D A ++ +L + + + + N + K
Sbjct: 3877 LYGRE---PPTLTR------QACSIDDPAEVRE---QLTDRDALLAKLKINLTRAQQVMK 4020
Query: 1073 RYHDKNLVSRDINSGQLVLL------YNSRLKLFPGKLKSKWSGPFLVKSVLPHGAVELM 1126
R DK + G VL+ +S + KL ++ GPF V + + A +L
Sbjct: 4021 RQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIGDVAYKLE 4200
Query: 1127 TPEGDRSFKV---------NGQRVKPYLGGDLPKERVGLVLK 1159
P R V NG PYL L +G V++
Sbjct: 4201 LPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVMQ 4326
Score = 118 bits (295), Expect = 2e-26
Identities = 71/185 (38%), Positives = 99/185 (53%)
Frame = +1
Query: 412 HRIHMEAEYKPVVQPQRRLNPTMKEVVKKEVLKLLNAGMIYPISDSSWVSPVHVVPKKGG 471
H I ++ PV R T K+ ++K + ++L G+I P S+S + P+ +V KK G
Sbjct: 1759 HAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGIIQP-SNSPFSLPILLVKKKDG 1935
Query: 472 MTVVANDKNELIPTRTVTGWRMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLD 531
WR C DYR LN+ T KD FP+P +D++++ L G ++ LD
Sbjct: 1936 ------------------SWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSKLD 2061
Query: 532 GYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIE 591
S Y+QI V PED+EKTAF G + + MPFGL APATFQ M IF + K +
Sbjct: 2062 LRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVL 2241
Query: 592 VFMDD 596
VF DD
Sbjct: 2242 VFFDD 2256
>BI321666
Length = 430
Score = 157 bits (398), Expect = 2e-38
Identities = 73/123 (59%), Positives = 92/123 (74%)
Frame = +2
Query: 814 TAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEVEPFDCWGIDFMG 873
+ VLQS F+ P++FKD + C+KCQRT S+SKRNE+PL I+EVE FD WGIDF+G
Sbjct: 5 STNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFVG 184
Query: 874 PFPSSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFTRFGTPRVLISDGGKH 933
PFP S+S +ILV VDYV+KWVEA+ C +DAK V+ FL+K IF+R G P VLI +GG H
Sbjct: 185 PFPPSFSNEYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNGGSH 364
Query: 934 FCN 936
CN
Sbjct: 365 LCN 373
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 132 bits (333), Expect = 7e-31
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 2/237 (0%)
Frame = +1
Query: 733 RPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEA 792
+PW+ D+ + + + ++ + A + L+K + D RCV EA
Sbjct: 133 KPWYFDIKRYVISKEYLPEIADNDKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREA 312
Query: 793 HSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNE 852
+ ++ H ++G H +G K+L++G++W T+ DC V +C KCQ
Sbjct: 313 NHMIEEVHEGSFGTHANGHAMARKILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPP 492
Query: 853 MPLTGIIEVEPFDCWGIDFMGPFPSSYSFLH--ILVCVDYVTKWVEAIPCVANDAKTVVS 910
PL + PF WGID +G S H ILV +DY TKWVEA VV
Sbjct: 493 HPLNVMSSPWPFSMWGIDVIGAIEPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVR 672
Query: 911 FLQKNIFTRFGTPRVLISDGGKHFCNNLLENVLKKYNIRHKVATPYHPQTSAQVEVS 967
F++K I R+G PR +I+D G + N ++ + +++ I+H TPY P+ + VEV+
Sbjct: 673 FIKKEIICRYGLPRKIITDNGTNLNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC232398
Length = 1054
Score = 92.4 bits (228), Expect(2) = 1e-30
Identities = 44/93 (47%), Positives = 66/93 (70%)
Frame = +1
Query: 161 KKIGGGEPKPTRMTLTLADRSISYPFGVLEDVLVKVNDLIFPGDFVILDMAEDEDMPLIL 220
++IG + +PTRMTL LAD SI+ FGV+ED+LVKV+ LIF DFVI+D+ ED ++ LIL
Sbjct: 172 RRIGNQKIEPTRMTLQLADHSITRSFGVVEDILVKVHQLIFLVDFVIMDIEEDAEIRLIL 351
Query: 221 GRPFLATGRALIDVEMGQLMLRFHNEQVVLNIF 253
G PF+ T + ++D+ G L + +++ N+F
Sbjct: 352 GWPFMVTAKCVVDMGKGNLEMSVEDQKATFNLF 450
Score = 60.8 bits (146), Expect(2) = 1e-30
Identities = 29/59 (49%), Positives = 41/59 (69%)
Frame = +2
Query: 70 LQVNIPFGEALDQMPVYAKFMKEMLTGRRKPKDDENISLSENCSAILQRKLPPKLKDPG 128
L++ IPFGE + QMP+Y KF+K++L + K + E I + E C A++Q KLPPK KD G
Sbjct: 2 LEITIPFGERIQQMPLYKKFLKDILIKKGKYINSETIVVGEYCRALIQ-KLPPKFKDLG 175
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 129 bits (324), Expect = 7e-30
Identities = 55/78 (70%), Positives = 67/78 (85%)
Frame = -3
Query: 956 YHPQTSAQVEVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYG 1015
YHPQT+ Q EVSN+++K++LE + S+RKDW+ KLDDA WAYR AFKT +G SP+QLVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 1016 KACHLPVELEHKAYWAIK 1033
KACHL VELEHKAYWA+K
Sbjct: 54 KACHLSVELEHKAYWALK 1
>BQ133845
Length = 389
Score = 122 bits (307), Expect = 7e-28
Identities = 60/120 (50%), Positives = 84/120 (70%)
Frame = +2
Query: 43 KLPYPHLAKKKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTGRRKPKD 102
++PYP + K KE+ KF+ +F +L++ +PF EAL QMP+YA F+K+MLT +
Sbjct: 32 EVPYPLVPS*KDKEQ-HLAKFLDIFKKLEITLPFEEALQQMPLYANFLKDMLTKKNWYIH 208
Query: 103 DENISLSENCSAILQRKLPPKLKDPGAFTIPCSIGPIDIGRALCDLGASINLMPLSMMKK 162
+ I + NCSA++QR LPP DPG T+PCSIG + +G+AL DLGASINLMPLSM ++
Sbjct: 209 SDKIVVEGNCSAVIQRILPP*HTDPGFVTMPCSIGEVAVGKALIDLGASINLMPLSMCRQ 388
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 115 bits (289), Expect = 9e-26
Identities = 53/108 (49%), Positives = 74/108 (68%)
Frame = +3
Query: 492 RMCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAF 551
RMC+DYR LN A+ KD+FPLP +D ++ +A A + F+DG+S YNQI +APED EKT F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 552 TCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDDFSA 599
+G F Y+ M FGL AT+ R M+++F DM+ K IE ++D+ A
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIA 326
>CF922488
Length = 741
Score = 114 bits (284), Expect = 3e-25
Identities = 52/104 (50%), Positives = 72/104 (69%)
Frame = +3
Query: 493 MCIDYRRLNSATRKDHFPLPFMDQMIERLAGQAFYCFLDGYSRYNQIAVAPEDQEKTAFT 552
MC+DYR LN A+ KD FPLP ++ +++ + + F+DG+S YNQI +APED EKT F
Sbjct: 30 MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAPEDMEKTTFI 209
Query: 553 CPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMIEKNIEVFMDD 596
+G F Y+ M FGL AT+QR M+++F DM+ K IEV+MDD
Sbjct: 210 TLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDD 341
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 90.9 bits (224), Expect = 3e-18
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 2/194 (1%)
Frame = +1
Query: 965 EVSNRQLKQILEKTIASNRKDWSKKLDDALWAYRTAFKTHLGFSPYQLVYGKACHLPVEL 1024
E +N+ +K+I++K S KDW + L AL YRT+ +T G +P+ LVYG LP E+
Sbjct: 1 EAANKNIKKIIQKMTVSY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEV 177
Query: 1025 EHKAYWAIKALNFDQLAAGKKRLLKLNELEEMRLRAYENALIYKARTKRYHDKNLVSRDI 1084
E + + + + R +LN +E RL A + +Y+ R K DK + R
Sbjct: 178 EVPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKF 357
Query: 1085 NSGQLVLLYNSR-LKLFPGKLKSKWSGPFLVKSVLPHGAVELMTPEGDR-SFKVNGQRVK 1142
+ G LVL S +K GK + GPF+VK GA+ L +G+ +N VK
Sbjct: 358 HEGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVK 537
Query: 1143 PYLGGDLPKERVGL 1156
Y +L + R+ L
Sbjct: 538 RYYA*NLGQLRMSL 579
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 80.1 bits (196), Expect = 5e-15
Identities = 38/73 (52%), Positives = 51/73 (69%)
Frame = +2
Query: 527 YCFLDGYSRYNQIAVAPEDQEKTAFTCPFGVFAYRRMPFGLCGAPATFQRCMLSIFSDMI 586
+ F+DG+S YNQI +A ED EKT F +G F+YR M FGL AT+QR M+++F DM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 587 EKNIEVFMDDFSA 599
K IEV++DD A
Sbjct: 182 HKEIEVYVDDMIA 220
>BE802896
Length = 416
Score = 77.4 bits (189), Expect = 3e-14
Identities = 35/60 (58%), Positives = 47/60 (78%)
Frame = -2
Query: 601 VLGQRKNKFFHAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHA 660
VL Q+ +K IYY+S+ L+ Q NY TTEKELLA++FALEKF SYL+G+++IV+ DHA
Sbjct: 181 VLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALEKFHSYLLGTRIIVYIDHA 2
>BI316922
Length = 405
Score = 75.5 bits (184), Expect = 1e-13
Identities = 44/131 (33%), Positives = 66/131 (49%), Gaps = 1/131 (0%)
Frame = +3
Query: 800 HSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGII 859
H G H + T +VL+ G++ T+ K C ++V +C++C + G+IS L I+
Sbjct: 9 HRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHNIV 188
Query: 860 EVEPFDCWGIDFMGPFP-SSYSFLHILVCVDYVTKWVEAIPCVANDAKTVVSFLQKNIFT 918
PF G+D + PFP S ++LV +D TKW+E V F+ +NI
Sbjct: 189 APWPFAI*GVDILRPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RNIVC 368
Query: 919 RFGTPRVLISD 929
FG P LISD
Sbjct: 369 *FGIPNTLISD 401
>AW184779
Length = 432
Score = 52.4 bits (124), Expect(2) = 9e-12
Identities = 23/69 (33%), Positives = 38/69 (54%)
Frame = +1
Query: 774 LFKVSTDGLMRRCVAGEEAHSIMWHCHSSAYGGHHSGERTTAKVLQSGFWWPTLFKDCHD 833
L+K + D ++ RCV EA ++ H ++G H + K+L+ G++W T+ DC
Sbjct: 16 LYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTMESDCCI 195
Query: 834 FVARCDKCQ 842
V +C KCQ
Sbjct: 196 HVWKCHKCQ 222
Score = 37.0 bits (84), Expect(2) = 9e-12
Identities = 18/34 (52%), Positives = 21/34 (60%), Gaps = 2/34 (5%)
Frame = +3
Query: 867 WGIDFMGPFPSSYSFLH--ILVCVDYVTKWVEAI 898
WGID +G S H ILV +DY TKWVEA+
Sbjct: 294 WGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAV 395
>TC206741
Length = 1191
Score = 62.0 bits (149), Expect = 1e-09
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = -1
Query: 819 QSGFWWPTLFKDCHDFVARCDKCQRTGSISKRNEMPLTGIIEV 861
QS F+WPTL+K +++V CD CQRTG IS+RNEMP II +
Sbjct: 303 QSSFYWPTLWKGAYEYVQTCDNCQRTGGISRRNEMPSNSIIPI 175
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 50.4 bits (119), Expect = 4e-06
Identities = 20/92 (21%), Positives = 47/92 (50%)
Frame = +2
Query: 733 RPWFADMANFKAGNIVPDDFEYHQRKKFFKDANHYVWDDPYLFKVSTDGLMRRCVAGEEA 792
+PW+ D+ + P + + +++ + A + L+K + D ++ CV G+E
Sbjct: 527 KPWYFDIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEV 706
Query: 793 HSIMWHCHSSAYGGHHSGERTTAKVLQSGFWW 824
+++ H ++G H +G K+L++G++W
Sbjct: 707 ENMLGEVHEGSFGTHSNGHAMARKILRAGYYW 802
>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
Length = 589
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/69 (33%), Positives = 40/69 (57%)
Frame = +1
Query: 611 HAIYYASKVLNENQVNYATTEKELLAVIFALEKFRSYLIGSKVIVFTDHAALKYLLTKGD 670
H I Y S+ L+ +NY T +KEL A+I A + + +L+ + ++ +DH +LKY+ K
Sbjct: 379 HPIAYFSEKLHSATLNYPTYDKELYALIRAPQTWEHFLVCKEFVIHSDHQSLKYIRGKSK 558
Query: 671 SKPRLLRWI 679
R +W+
Sbjct: 559 LNKRHAKWV 585
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,782,807
Number of Sequences: 63676
Number of extensions: 713931
Number of successful extensions: 3484
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 3449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3478
length of query: 1161
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1053
effective length of database: 5,762,624
effective search space: 6068043072
effective search space used: 6068043072
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148291.6