Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148291.4 + phase: 0 /pseudo
         (659 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP595172 polyprotein [Glycine max]                                    424  e-119
TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)         139  3e-33
CO982196                                                              123  3e-28
BI425021                                                              118  7e-27
BE802896                                                               99  6e-21
TC211627                                                               71  3e-20
AW570005                                                               93  4e-19
BI317638 weakly similar to GP|9294238|dbj| contains similarity t...    86  4e-18
BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis ...    87  2e-17
BQ299538                                                               54  7e-17
BM084967                                                               85  1e-16
BI424213                                                               82  8e-16
TC233069                                                               69  5e-14
BQ627806                                                               48  2e-13
BI317507                                                               70  2e-12
AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine m...    70  2e-12
NP395548 reverse transcriptase [Glycine max]                           54  2e-07
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp...    53  5e-07
BU549069                                                               52  1e-06
CA820403 weakly similar to GP|13273463|gb| pol protein integrase...    51  2e-06

>NP595172 polyprotein [Glycine max]
          Length = 4659

 Score =  424 bits (1089), Expect = e-119
 Identities = 248/657 (37%), Positives = 364/657 (54%), Gaps = 4/657 (0%)
 Frame = +1

Query: 1    RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
            +L+A+LSKC F  +EV +LGH + G  ++++ +KV AV  W T  +V ++R FLGL GYY
Sbjct: 2332 QLFARLSKCSFGDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYY 2511

Query: 61   RRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYC 120
            RRFI+ ++ +A P T L  K  SF+W+ + E +F +LK+ +T APVL LP   +PF++  
Sbjct: 2512 RRFIKSYANIAGPLTDLLQKD-SFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILET 2688

Query: 121  DASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 180
            DAS +G+G VL Q+G  +AY S++L    +    +  EL A+   L  +RHYL G++F +
Sbjct: 2689 DASGIGVGAVLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFII 2868

Query: 181  FRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPG*ANVVADALSRKTLHM 240
                  +D +SLK L DQ      Q+ WL     YDF + Y PG  N  ADALSR  +  
Sbjct: 2869 R-----TDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFM-- 3027

Query: 241  SALMVKEFELLEHFRDMSLVCELSFQSIHLGMLKIDSDFLNSIREAQKVDLKFVDLMTSG 300
                                  L++   H       S FL  +R     D     LM + 
Sbjct: 3028 ----------------------LAWSEPH-------SIFLEELRARLISDPHLKQLMETY 3120

Query: 301  NDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLF 360
                D+      +G+L ++ +V IP  EE+   IL+E H S +  H G T+    LK  F
Sbjct: 3121 KQGADASHYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHAGITRTLARLKAQF 3300

Query: 361  WWSGLKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRG 420
            +W  ++ DV  ++  CLICQ++K  +  PAGLL PL +P+  W+ ++MDF+T LPN+  G
Sbjct: 3301 YWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPNS-FG 3477

Query: 421  HDAIWVVVDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFW 480
               I VV+DRLTK AHFIP+  +Y    +AE ++  +VKLHG+P SIVSDRD  FTS FW
Sbjct: 3478 LSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFW 3657

Query: 481  KRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNN 540
            + L    G+ L +SSAYHPQ+DGQSE   + LE  LR    E    W   LP  EF YN 
Sbjct: 3658 QHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEFWYNT 3837

Query: 541  SYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHETTEKVRLIRE---RMKASQ 597
            +YH S+GM PF ALYGR    P        S+    ++  + T++  L+ +    +  +Q
Sbjct: 3838 AYHMSLGMTPFRALYGRE---PPTLTRQACSIDDPAEVREQLTDRDALLAKLKINLTRAQ 4008

Query: 598  SRQKSYHDKRRKELEFQEGDHVFLRVTPLTGVGRAL-KSRKLTPKFIGPYQISDRVG 653
               K   DK+R ++ FQ GD V +++ P       L K++KL+ ++ GP+++  ++G
Sbjct: 4009 QVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFKVLAKIG 4179


>TC211067 similar to UP|Q9LQH2 (Q9LQH2) F15O4.13, partial (9%)
          Length = 589

 Score =  139 bits (351), Expect = 3e-33
 Identities = 74/168 (44%), Positives = 103/168 (61%)
 Frame = +1

Query: 43  TLKSVTEIRSFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLT 102
           TLKSV +IRSF GLA +YRRF+  FS +A P  +L  K  +F W  + E++F  LK +LT
Sbjct: 100 TLKSVGDIRSFHGLASFYRRFVPNFSTVASPLNELVKKNMAFTWGEKQEQAFALLKEKLT 279

Query: 103 IAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAV 162
            APVL LP   + F + CDAS +G+  VL+Q G  +AY S +L     NYPT+D EL A+
Sbjct: 280 KAPVLALPDFSKTFELECDASGVGVRAVLLQGGHPIAYFSEKLHSATLNYPTYDKELYAL 459

Query: 163 VFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLE 210
           +   + W H+L         F + SDH+SLKY+  + +LN R  +W+E
Sbjct: 460 IRAPQTWEHFLVCK-----EFVIHSDHQSLKYIRGKSKLNKRHAKWVE 588



 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +2

Query: 11 FWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGFSKL 70
          F +  + F G ++  + + +DP K+ A+ +W     V EI   LG +   +  IEG   +
Sbjct: 2  FCVDNIFFSGFVVGRNGVQMDPEKIKAIQEWPPP*KVWEI---LGASMG*QASIEGSFLI 172

Query: 71 ALPSTQLTCKGKSFVW 86
          +L    L+      +W
Sbjct: 173SLQLHHLSMSW*RRIW 220


>CO982196 
          Length = 812

 Score =  123 bits (308), Expect = 3e-28
 Identities = 67/166 (40%), Positives = 95/166 (56%)
 Frame = +1

Query: 314 GVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQFV 373
           G L F+ ++ +  N     L+L+E   S L  H G  + +  +  + +W G+K+    +V
Sbjct: 316 GKLYFKDRLVLSKNSTKIPLLLKELQDSPLGGHSGFFRTFKRVANVVFWQGMKKTTRDYV 495

Query: 374 YACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTK 433
            AC IC+++K     PAGLL  L +P   W  ISMDF+  LP   +G D I VVVDRLTK
Sbjct: 496 AACEICRRNKTSTLSPAGLL*LLPIPTKVWTDISMDFIGGLPKA-QGKDNILVVVDRLTK 672

Query: 434 SAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRF 479
            AHF  ++  Y   ++AE++I  +V+LHG PASIVSD    F S F
Sbjct: 673 YAHFFALSHPYTAKEVAELFIKELVRLHGFPASIVSDXXRLFMSLF 810


>BI425021 
          Length = 426

 Score =  118 bits (296), Expect = 7e-27
 Identities = 60/128 (46%), Positives = 82/128 (63%)
 Frame = -1

Query: 393 LTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDRLTKSAHFIPININYPVAQLAEI 452
           L PL VP+  W+ +SMDF+  LP    GH  I+VVV+R +K  H   +  ++    +A +
Sbjct: 426 LCPLPVPQRPWEDLSMDFIVGLPPY-HGHTTIFVVVNRFSKGIHLGTLPTSHTAHMVASL 250

Query: 453 YIHSVVKLHGVPASIVSDRDPRFTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSL 512
           +++ V+KLHG P SIVSDRDP F S FW+ L    G+ LR+SSAYHPQTDGQ+E   + +
Sbjct: 249 FLNIVIKLHGFPRSIVSDRDPLFISHFWQDLFRLSGTVLRMSSAYHPQTDGQTEVLNRVI 70

Query: 513 EDLLRVCV 520
           E  LR  V
Sbjct: 69  EQYLRAFV 46


>BE802896 
          Length = 416

 Score = 99.0 bits (245), Expect = 6e-21
 Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 4/134 (2%)
 Frame = -2

Query: 52  SFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIAPVLILPK 111
           SFLG AG+YRRFI  F K+ALP + L  K   F ++ +C+ +F+ LKR L   P++  P 
Sbjct: 415 SFLGHAGFYRRFIRDFRKVALPLSNLLQKEVEFDFNDKCK*AFDCLKRALITTPIIQAPD 236

Query: 112 PEEPFVVYCDASKLGLGGVLMQD----GKVVAYASRQLRVHEKNYPTHDLELAAVVFVLK 167
              PF + CDAS   LG VL Q      +V+ Y+SR L   + NY T + EL A+VF L+
Sbjct: 235 WTAPFELMCDASNYALGVVLAQKIDKLPRVIYYSSRTLDAAQANYTTTEKELLAIVFALE 56

Query: 168 IWRHYLYGSRFEVF 181
            +  YL G+R  V+
Sbjct: 55  KFHSYLLGTRIIVY 14


>TC211627 
          Length = 1034

 Score = 71.2 bits (173), Expect(2) = 3e-20
 Identities = 38/78 (48%), Positives = 44/78 (55%)
 Frame = +2

Query: 475 FTSRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLI 534
           F S  W  L    G+KLR S+AYHPQTDGQ+E   + LE  LR  V +    W   L L 
Sbjct: 5   FISGLWHELFHISGTKLRFSTAYHPQTDGQTEVINRILEQYLRAFVHDHPQHWFKFLSLA 184

Query: 535 EFTYNNSYHSSIGMAPFE 552
           E  YN S HS IG +PFE
Sbjct: 185 E*CYNTSVHSGIGFSPFE 238



 Score = 45.8 bits (107), Expect(2) = 3e-20
 Identities = 28/89 (31%), Positives = 42/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 566 FESGESVVLGPD-LVHETTEKVRLIRERMKASQSRQKSYHDKRRKELEFQEGDHVFLRVT 624
           + +G S V   D ++H        +  R++  Q   K   D  R++L F  GD V++R+ 
Sbjct: 276 YSAGTSTVEAVDAILHSLATIHHTLTCRLQKYQDSMKRIADSHRRDLTFNIGDWVYVRL* 455

Query: 625 PLTGVGRALKSRKLTPKFIGPYQISDRVG 653
           P           KL+ +F GPYQI  RVG
Sbjct: 456 PYRQTSIQSTYTKLSKRFYGPYQIQARVG 542


>AW570005 
          Length = 413

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 52/131 (39%), Positives = 75/131 (56%)
 Frame = -2

Query: 45  KSVTEIRSFLGLAGYYRRFIEGFSKLALPSTQLTCKGKSFVWDAQCERSFNELKRRLTIA 104
           ++   +R FL L G+YRRFI+G++ +A P + L  K  SFVW  + + +F  LK  +T  
Sbjct: 403 RTARSLRGFLRLTGFYRRFIKGYAAMAAPLSHLLTKD-SFVWSPEADVAFQALKNVVTNT 227

Query: 105 PVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAYASRQLRVHEKNYPTHDLELAAVVF 164
            VL LP   +PF V  DAS   +G VL Q+G  +A+ S++         T+  ELAA+  
Sbjct: 226 LVLALPDFTKPFTVETDASGSDMGAVLSQEGHPIAFFSKEFCPKLVRSSTYVHELAAITN 47

Query: 165 VLKIWRHYLYG 175
           V+K WR YL G
Sbjct: 46  VVKKWRQYLLG 14


>BI317638 weakly similar to GP|9294238|dbj| contains similarity to reverse
           transcriptase~gene_id:K11J14.5 {Arabidopsis thaliana},
           partial (5%)
          Length = 420

 Score = 86.3 bits (212), Expect(2) = 4e-18
 Identities = 48/116 (41%), Positives = 67/116 (57%)
 Frame = -2

Query: 368 DVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVV 427
           + AQ +  CL CQ +K E ++   LL PL VP   W+ +S+DF+T L      H AI VV
Sbjct: 350 ECAQMLPNCLDCQHTKYETKRIVDLLCPLLVPHRPWEDLSLDFITGLLPY-HVHTAILVV 174

Query: 428 VDRLTKSAHFIPININYPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRL 483
           VD  +K  H   +  ++    +A ++I SV KLHG+P S+VSD D  F S FW+ L
Sbjct: 173 VDHFSKGIHLGMLPSSHTAHTVACLFIDSVAKLHGLPRSLVSDCDLLFVSHFWQEL 6



 Score = 23.9 bits (50), Expect(2) = 4e-18
 Identities = 10/26 (38%), Positives = 13/26 (49%)
 Frame = -1

Query: 346 HPGATKMYHDLKKLFWWSGLKRDVAQ 371
           H G  K    L K  +W G++ DV Q
Sbjct: 405 HTGIAKTLA*LSKNIYWFGMRTDVTQ 328


>BQ272766 weakly similar to GP|28558781|gb| pol protein {Cucumis melo},
           partial (9%)
          Length = 410

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 45/65 (69%), Positives = 50/65 (76%), Gaps = 7/65 (10%)
 Frame = -3

Query: 602 SYHDKRRKELEFQEGDHVFLRVTPLTGVGRALKSRKLTPKFIGPYQISDRV-------GL 654
           SYHDKRRK+LEF+ GDHVFLRVTP TGVGRALKS KLTP FIGP+QI  +V        L
Sbjct: 408 SYHDKRRKDLEFEVGDHVFLRVTP*TGVGRALKS*KLTPHFIGPFQILKKVDFVAYQIAL 229

Query: 655 PPHLS 659
           PP L+
Sbjct: 228 PPSLT 214


>BQ299538 
          Length = 426

 Score = 53.5 bits (127), Expect(2) = 7e-17
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +3

Query: 488 GSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIG 547
           G+ L++S++YHP  DGQ+      LE  LR  V +Q       L   E+ YN ++H+S G
Sbjct: 144 GTYLKMSTSYHP*IDGQTVN--HCLETFLRCFVADQPKM*VQWLSWAEYWYNTNFHASTG 317

Query: 548 MAPFEALYGRR 558
             PFE +YGR+
Sbjct: 318 TTPFEVVYGRK 350



 Score = 52.4 bits (124), Expect(2) = 7e-17
 Identities = 24/40 (60%), Positives = 27/40 (67%)
 Frame = +1

Query: 444 YPVAQLAEIYIHSVVKLHGVPASIVSDRDPRFTSRFWKRL 483
           Y    LAEI+   VV LHGVPAS++SD DP F S FWK L
Sbjct: 13  YSARVLAEIFTKEVVHLHGVPASVLSDEDPIFVSSFWKEL 132


>BM084967 
          Length = 426

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 49/118 (41%), Positives = 64/118 (53%)
 Frame = -2

Query: 313 QGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWWSGLKRDVAQF 372
           Q ++   G + +P        +L E H S    H G TK    L + F W G+++DV QF
Sbjct: 356 QDLILKNGCIWLPSGFSFIPTLLLEYHSSPTDAHIGVTKTMARLSENFTWIGIRKDVEQF 177

Query: 373 VYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAIWVVVDR 430
           V ACL CQ +K E QK AGLL PL VP   W+ +S +F+  L    RG+ AI VVV R
Sbjct: 176 VAACLDCQYTKYEAQKMAGLLCPLPVPCRPWEDLSFNFIIGLSEF-RGYTAILVVVGR 6


>BI424213 
          Length = 426

 Score = 82.0 bits (201), Expect = 8e-16
 Identities = 51/143 (35%), Positives = 73/143 (50%), Gaps = 8/143 (5%)
 Frame = +1

Query: 477 SRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEF 536
           S FWK L   LG+KL  S+  HPQTDGQ++   +SL  LLR  +     +WD +LP +EF
Sbjct: 4   SHFWKTLWAKLGTKLLFSTTCHPQTDGQTKVVNRSLSTLLRALLKGNHKSWDEYLPHVEF 183

Query: 537 TYNNSYHSSIGMAPFEALYGRRCRTPLCWFESGESVVLGPDLVHE----TTEKVRLIRER 592
            YN   H +   +PFE +YG    TPL        + L    +H+     +E V+ + ER
Sbjct: 184 AYNRGVHRTTKQSPFEVVYGFNPLTPLDLI----PLPLDTSFIHKEGESRSEFVKKMHER 351

Query: 593 MKASQSRQKSYH----DKRRKEL 611
           +K     Q   +    ++ RKEL
Sbjct: 352 VKNQIENQTKVYSTKGNRGRKEL 420


>TC233069 
          Length = 881

 Score = 69.3 bits (168), Expect(2) = 5e-14
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +2

Query: 365 LKRDVAQFVYACLICQKSKVEHQKPAGLLTPLDVPEWKWDSISMDFVTSLPNTPRGHDAI 424
           + RDV   + AC  CQ++K   QK  GLL PL +P   W  ISMDFVT LP +  G   I
Sbjct: 224 MARDVCDHICACTNCQQNKYSTQK*FGLLQPLPIP*QVWKDISMDFVTHLPPS-*GKKMI 400

Query: 425 WVVVDRLTKSAHF--IPININY 444
           WV+VD  TK +HF  +P +++Y
Sbjct: 401 WVIVDCWTKYSHFLSLPAHLSY 466



 Score = 26.9 bits (58), Expect(2) = 5e-14
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 314 GVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDLKKLFWW 362
           G+L +   + IP   EL+ ++L E H S L  H G     + L   F W
Sbjct: 73  GLLLYCTHLFIPLESELRAILLGECHDSLLGGHSGIKGTLNRLFVSFAW 219


>BQ627806 
          Length = 435

 Score = 48.1 bits (113), Expect(2) = 2e-13
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +3

Query: 84  FVWDAQCERSFNELKRRLTIAPVLILPKPEEPFVVYCDASKLGLGGVLMQDGKVVAY 140
           F W+ + +R+F++LK  L  APVL LP     FVV  DAS +G+G +L Q+   +A+
Sbjct: 21  FHWNEEADRAFSQLKLALCQAPVLGLPDFNSSFVVETDASGIGMGAILSQNHHPLAF 191



 Score = 46.2 bits (108), Expect(2) = 2e-13
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 154 THDLELAAVVFVLKIWRHYLYGSRFEVFRFEVFSDHKSLKYLFDQKELNMRQRRWLELLK 213
           T+  ELAA+   +K WR YL G  F +      +DH+SLK L  Q      Q+ +L  L 
Sbjct: 232 TYVRELAAITVAVKKWRQYLLGHHFVIL-----TDHRSLKELMSQAVQTPEQQIYLARLM 396

Query: 214 DYDFGLNYHPG 224
            +D+ + Y  G
Sbjct: 397 GFDYTIQYRAG 429


>BI317507 
          Length = 359

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -1

Query: 1   RLYAKLSKCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYY 60
           RL A   KC F  + + +LGH+I    +A+D +KV +V +W   K+V  + SFL L GYY
Sbjct: 275 RLVANRKKCYFSQTTIEYLGHVISKDCVAMDSNKVKSVIEWPVPKNVKRVCSFLRLTGYY 96

Query: 61  RRFIEGFSKLA-LPSTQLTCKGKSFVW 86
           R+FI+ + KLA  P T LT K   F W
Sbjct: 95  RKFIKDYGKLAPRPLTDLT-KNDGFKW 18


>AW507721 weakly similar to GP|27764548|gb polyprotein {Glycine max}, partial
           (3%)
          Length = 464

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 34/98 (34%), Positives = 60/98 (60%), Gaps = 1/98 (1%)
 Frame = +1

Query: 297 MTSGNDTEDSDFKVDDQGVLRFRGKVCIPDNEELKKLILEESHKSRLSIHPGATKMYHDL 356
           + S N  +  D+ V    V+ ++G++ +P++ +L K+I+ ESH S++  H G T+    +
Sbjct: 172 LCSNNAGKSGDY-VLHHDVIIWKGRIMLPNDSQLLKMIMTESHASKVGGHAGTTRTIVRI 348

Query: 357 KKLFWWSGLKRDVAQFVYACLICQKSKVEHQ-KPAGLL 393
              F+W  ++ D+ +FV  C+ICQ++KV H   PAGLL
Sbjct: 349 NAQFYWPKMREDIMKFVQECVICQQAKVTHSLLPAGLL 462



 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/21 (61%), Positives = 15/21 (70%)
 Frame = +2

Query: 215 YDFGLNYHPG*ANVVADALSR 235
           YDF + Y PG  N+ ADALSR
Sbjct: 20  YDFIIQYSPGKENIPADALSR 82


>NP395548 reverse transcriptase [Glycine max]
          Length = 762

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/63 (44%), Positives = 38/63 (59%)
 Frame = +1

Query: 8   KCEFWLSEVSFLGHIIFGSDIAVDPSKVDAVSQWETLKSVTEIRSFLGLAGYYRRFIEGF 67
           KC F + E   LGH I    I VD +K+D + +     +V  IRSFLG A +YRRFI+ F
Sbjct: 574 KCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQARFYRRFIKDF 753

Query: 68  SKL 70
           +K+
Sbjct: 754 TKV 762


>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
           {Arabidopsis thaliana}, partial (13%)
          Length = 378

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 22/72 (30%), Positives = 42/72 (57%)
 Frame = -3

Query: 492 RLSSAYHPQTDGQSERTIQSLEDLLRVCVLEQGGAWDSHLPLIEFTYNNSYHSSIGMAPF 551
           R+S+ YHPQT+GQ+E + + ++ +L   V      W + L    + +  +Y + IGM+P+
Sbjct: 340 RVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHRTAYKAPIGMSPY 161

Query: 552 EALYGRRCRTPL 563
             ++G+ C  P+
Sbjct: 160 RVVFGKACHLPV 125


>BU549069 
          Length = 615

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/46 (60%), Positives = 32/46 (68%), Gaps = 7/46 (15%)
 Frame = -1

Query: 621 LRVTPLTGVGRALKSRKLTPKFIGPYQISDR-------VGLPPHLS 659
           L+VTP TGVG+ALKSRKLTP FIG +QI  R       + LPP LS
Sbjct: 615 LKVTPRTGVGQALKSRKLTPHFIGHFQILKRAXPVAYQIALPPSLS 478


>CA820403 weakly similar to GP|13273463|gb| pol protein integrase region
           {Ginkgo biloba}, partial (52%)
          Length = 421

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -3

Query: 453 YIHSVVKLHGVPASIVSDRDPRFT-SRFWKRLQDALGSKLRLSSAYHPQTDGQSERTIQS 511
           +I   VKLHG  +SIVSD D  F  S FW  L    G+KL+ S AYHPQ D  ++   + 
Sbjct: 335 FIKEAVKLHGCSSSIVSDWDRLFLIS*FWTELFKMEGTKLKFSLAYHPQPDSHTKVVNRC 156

Query: 512 LEDLLRVCVLEQGGAW 527
           +E  L+     +   W
Sbjct: 155 IEMNLQCLTTSKRKQW 108


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,164,409
Number of Sequences: 63676
Number of extensions: 420885
Number of successful extensions: 1791
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of query: 659
length of database: 12,639,632
effective HSP length: 103
effective length of query: 556
effective length of database: 6,081,004
effective search space: 3381038224
effective search space used: 3381038224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)


Medicago: description of AC148291.4