TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148289.15 + phase: 0 /pseudo
         (273 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (F...    30  0.90
BU764568                                                               28  3.4

>TC232593 weakly similar to UP|Q9XG91 (Q9XG91) Tpv2-1c protein (Fragment),
           partial (16%)
          Length = 562

 Score = 30.4 bits (67), Expect = 0.90
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 7   QQKYIGELMLEKFEMKDCNSISNPSETNSKLVECSEEEK 45
           Q+KY  E+ L+KF+M++C S+S P     K  +    +K
Sbjct: 364 QRKYAKEI-LKKFQMEECKSVSTPMNQKEKFNKVDGADK 477


>BU764568 
          Length = 420

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 158 CTRIM-*S*IH*RNFCYLSSSMIGFSDERAQV*SDETSNTGD*QQISHKSCLESNLTWQK 216
           C++I  *S I    F  L + M   +  RAQV*   T++T  *Q  S   CL+SNL+ + 
Sbjct: 230 CSQIKC*SRIQGHGFGNL*AHMAETTSLRAQV*RGYTNDTNM*QSSSFTYCLQSNLSLED 409

Query: 217 *TH 219
            T+
Sbjct: 410 QTY 418


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.358    0.156    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,148,936
Number of Sequences: 63676
Number of extensions: 153275
Number of successful extensions: 1523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of query: 273
length of database: 12,639,632
effective HSP length: 96
effective length of query: 177
effective length of database: 6,526,736
effective search space: 1155232272
effective search space used: 1155232272
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 58 (26.9 bits)