BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.13 - phase: 0
(2306 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 373 e-103
CF922488 334 3e-91
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 292 1e-78
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 219 2e-71
NP595172 polyprotein [Glycine max] 244 3e-64
NP334778 reverse transcriptase [Glycine max] 221 3e-57
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 208 3e-53
BQ628592 113 7e-48
AW184779 111 2e-47
NP395547 reverse transcriptase [Glycine max] 187 4e-47
NP395548 reverse transcriptase [Glycine max] 179 1e-44
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 172 2e-42
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 145 2e-34
CF922341 124 4e-28
BI498328 119 1e-26
BG839293 117 8e-26
BI316922 103 9e-22
BE804087 87 1e-16
BI321666 82 3e-15
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 75 3e-13
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 373 bits (958), Expect = e-103
Identities = 172/266 (64%), Positives = 209/266 (77%)
Frame = +1
Query: 1861 NHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQTREYPPGASNKDKKTLRRL 1920
N D+P I +PA+ E D KPW+ DIK ++ ++EY P ++ DK+TLRRL
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQVEEERDGKPWYFDIKRYVISKEYLPEIADNDKRTLRRL 225
Query: 1921 SSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYY 1980
++ FF++G ILYKRN D LRCVD EA+ +I E+HEGSFG H NGH MA+KILRAGYY
Sbjct: 226 AAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMARKILRAGYY 405
Query: 1981 WMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMIGRIEPKASNGH 2040
W+TMESDC H RKCHKCQ +AD ++ PP LN++SSPWPFSMWGID+IG IEPKASNGH
Sbjct: 406 WLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAIEPKASNGH 585
Query: 2041 RFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDNGTNLNNKMMKE 2100
RFILVAIDYFTKWVEAASY +V + VVV+FIK IICRYG+P +IITDNGTNLNNKMM E
Sbjct: 586 RFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTNLNNKMMGE 765
Query: 2101 LCDDFKIEHHNSSPYRPQMNGAVEAA 2126
+C++FKI+HHN +PYRP+MN AVE A
Sbjct: 766 ICEEFKIQHHNPTPYRPKMN*AVEVA 843
>CF922488
Length = 741
Score = 334 bits (856), Expect = 3e-91
Identities = 168/246 (68%), Positives = 194/246 (78%)
Frame = +3
Query: 1317 VPKKDGKVRMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAP 1376
V K+DGKV MCVDYRDLN ASPKD FPLPHI+VLVD+T FSFMDGFSGYNQIK+AP
Sbjct: 3 VLKEDGKV*MCVDYRDLN*ASPKDKFPLPHINVLVDNTTSFSQFSFMDGFSGYNQIKIAP 182
Query: 1377 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVT 1436
ED EKT+FIT WGTFCYK M FGL N GATYQR M LF DM+HKEIEVY+DDMIVKS T
Sbjct: 183 EDMEKTTFITLWGTFCYKAMSFGLKNVGATYQRAMVALF*DMMHKEIEVYMDDMIVKSRT 362
Query: 1437 EEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMP 1496
EE+H+ L+K+F+RLRKY+LRLNP KC F V+S KLL FI S +GIEVD +KVK I EM
Sbjct: 363 EEEHLVNLRKLFRRLRKYRLRLNPAKCMFEVKSRKLLDFIDS*RGIEVDSNKVKVILEMA 542
Query: 1497 APRTEKEVRGFLGRLNYISRFISHMTATCGPIFKLLRKEQGIVWTEDCQKAFDSIKKYLL 1556
P TEK+V+GFLGRLNYI RFIS + ATC P+F LL K Q + W DC AF+ IK+ L+
Sbjct: 543 KPHTEKQVQGFLGRLNYIVRFIS*LIATCEPLFILLCKNQFVKWDHDC*VAFERIKQCLI 722
Query: 1557 EPPILI 1562
P +L+
Sbjct: 723 NPHVLV 740
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 292 bits (747), Expect = 1e-78
Identities = 139/182 (76%), Positives = 158/182 (86%)
Frame = +1
Query: 2124 EAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVE 2183
EAANKNIK+I+QKM V+YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 2184 IPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFK 2243
+PSLR+L E+ L E+EW Q RYDQLNLIE KR+TA+ HG+LYQ+RMK AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 2244 EGDLVLKKIFSFQPDSRGKWAPNYEGPYVVKRAFSGGAMTLQTMDGEELPRPVNTDAVKK 2303
EGDLVLKK+ D RGKWAPNYEGP+VVKRAFSGGA+ L MDGEELP P+N+D VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 2304 YF 2305
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 219 bits (559), Expect(2) = 2e-71
Identities = 102/199 (51%), Positives = 142/199 (71%)
Frame = +2
Query: 1783 IEEAIDLRIKNIEIYGDSALVINQIKGKWETLHAGLIPYRDYARRLLTFFNKVELHHIPR 1842
++ AID +K +++YGDSALVI+Q++G+ ET LIPY+ Y + L FF+++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1843 DENQMADALATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHDIKVFLQT 1902
+ENQMADALATL SM ++ H D+P I + RPA+ E D KPW+ DIK ++++
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLVEEERDGKPWYFDIKRYVES 565
Query: 1903 REYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFG 1962
+EYP AS+ DK+ RRL++ FF++G ILYKRN D VLL CV+ E + ++ E+HEGSFG
Sbjct: 566 KEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLGEVHEGSFG 745
Query: 1963 IHPNGHTMAKKILRAGYYW 1981
H NGH MA+KILRAGYYW
Sbjct: 746 THSNGHAMARKILRAGYYW 802
Score = 70.5 bits (171), Expect(2) = 2e-71
Identities = 35/62 (56%), Positives = 43/62 (68%), Gaps = 1/62 (1%)
Frame = +1
Query: 1721 LFGEGPDPD-SVWGLIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEAC 1779
LF E D D W + FD A NV G+G+GA+L++P IPFT RL FDCTNN+AEYEAC
Sbjct: 16 LFEEKLDEDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
Query: 1780 IM 1781
+
Sbjct: 196 AL 201
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 244 bits (623), Expect = 3e-64
Identities = 151/447 (33%), Positives = 232/447 (51%)
Frame = +1
Query: 1227 LETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPDMA 1286
L T++ ++ LL Y VFA P + D H +PLK PVK + R
Sbjct: 1660 LPTNIDPELAILLHTYAQVFAVPASLPPQREQD---HAIPLKQGSGPVKVRPYRYPHTQK 1830
Query: 1287 LKIKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFPLPH 1346
+I++ +Q+ + G + SN P L I+ V KKDG R C DYR LN + KD FP+P
Sbjct: 1831 DQIEKMIQEMLVQGIIQPSNSPFSLP-ILLVKKKDGSWRFCTDYRALNAITVKDSFPMPT 2007
Query: 1347 IDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1406
+D L+D ++ FS +D SGY+QI + PEDREKT+F T G + + VMPFGL NA AT
Sbjct: 2008 VDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPAT 2187
Query: 1407 YQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFG 1466
+Q M +F + K + V+ DD+++ S + +DH+K+L+ + Q L++++L +KC+FG
Sbjct: 2188 FQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFG 2367
Query: 1467 VRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGRLNYISRFISHMTATCG 1526
LG VS G+ ++ KV+A+ + P P K++RGFLG Y RFI G
Sbjct: 2368 DTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAG 2547
Query: 1527 PIFKLLRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLG 1586
P+ LL+K+ +W + + AF +KK + E P+L P +P I+ +G VLG
Sbjct: 2548 PLTDLLQKD-SFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 2724
Query: 1587 QQDETGRKEHAIYYLSKKFTECESRYSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDP 1646
Q H I Y SKK + S + A+ A + RHY++ + + +
Sbjct: 2725 QNG------HPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRS 2886
Query: 1647 IKYIFEKPALTGRIARWQMLLSEYDIE 1673
+K + ++ T W YD +
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYDFK 2967
Score = 94.7 bits (234), Expect = 4e-19
Identities = 113/451 (25%), Positives = 187/451 (41%), Gaps = 13/451 (2%)
Frame = +1
Query: 1836 ELHHIPRDENQMADALATLSSMIKVNHHNDVPLISVKFLDRPAYVFAAEVVFDDKPWFHD 1895
++ + P +NQ ADAL+ + + H+ FL+ A ++ D
Sbjct: 2965 KIEYKPGKDNQAADALSRMFMLAWSEPHSI-------FLEE----LRARLISDPH----- 3096
Query: 1896 IKVFLQTREYPPGASNKDKKTLRRLSSNFFLNGDILYKRNFDTVLLRCVDKYEADLLIHE 1955
+K ++T Y GA +S++ + +LY + D V++ ++ + ++ E
Sbjct: 3097 LKQLMET--YKQGAD----------ASHYTVREGLLYWK--DRVVIPAEEEI-VNKILQE 3231
Query: 1956 IHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLL 2015
H G H G T L+A +YW M+ D + +KC CQ +P L L
Sbjct: 3232 YHSSPIGGHA-GITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPL 3408
Query: 2016 SSPWPFSMW---GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY-ANVTKQVVVKFI 2071
P P +W +D I + S G I+V ID TK+ A+ +VV +
Sbjct: 3409 --PIPQQVWEDVAMDFITGLPN--SFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAF 3576
Query: 2072 KNHIICRYGIPNRIITDNGTNLNNKMMKELCDDFKIEHHN---SSPYRPQMNGAVEAANK 2128
+HI+ +GIP I++D + + L FK++ SS Y PQ +G E NK
Sbjct: 3577 MSHIVKLHGIPRSIVSDRDRVFTSTFWQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNK 3747
Query: 2129 NIKRIVQKMVVTY-KDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPVEVEIPSL 2187
++ ++ + K W + LP+A Y T+ S G TPF +YG E P
Sbjct: 3748 CLEMYLRCFTYEHPKGWVKALPWAEFWYNTAYHMSLGMTPFRALYGRE---------PPT 3900
Query: 2188 RVLMEADLSEAEWVQNRYDQLNLIEEKRMTALCHGQLYQKRMKQAFDKKVRPREFKEGDL 2247
+ + V+ + + + K L Q+ MK+ DKK F+ GD
Sbjct: 3901 LTRQACSIDDPAEVREQLTDRDALLAKLKINLTRA---QQVMKRQADKKRLDVSFQIGDE 4071
Query: 2248 VLKKIFSFQPDS-----RGKWAPNYEGPYVV 2273
VL K+ ++ S K + Y GP+ V
Sbjct: 4072 VLVKLQPYRQHSAVLRKNQKLSMRYFGPFKV 4164
>NP334778 reverse transcriptase [Glycine max]
Length = 431
Score = 221 bits (563), Expect = 3e-57
Identities = 103/143 (72%), Positives = 118/143 (82%)
Frame = +3
Query: 1325 RMCVDYRDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSF 1384
RMCVDYRDLN+ASPKD+FPLPHID+L+ + A +FSFMDGFSGYNQIKMAPED EKT+F
Sbjct: 3 RMCVDYRDLNRASPKDNFPLPHIDILMANMASFALFSFMDGFSGYNQIKMAPEDMEKTTF 182
Query: 1385 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYL 1444
IT WGTFCYKVM FGL N GATY R M LF DM+HKEIE YVD+MI KS EE+H+ L
Sbjct: 183 ITLWGTFCYKVMSFGLKNFGATYHRAMVALFQDMMHKEIEAYVDEMIAKSRMEEEHLVNL 362
Query: 1445 QKMFQRLRKYKLRLNPNKCTFGV 1467
Q +F +LRKY+LRLNP KC FG+
Sbjct: 363 QNLFGQLRKYRLRLNPRKCVFGL 431
>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 402
Score = 208 bits (529), Expect = 3e-53
Identities = 100/133 (75%), Positives = 114/133 (85%)
Frame = +2
Query: 1360 FSFMDGFSGYNQIKMAPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMI 1419
FSFMDGFSGYNQI MA ED EKT+F+T WGTF Y+VM FGL N GATYQR M LFHDM+
Sbjct: 2 FSFMDGFSGYNQI*MAREDVEKTTFVTLWGTFSYRVMAFGLKNTGATYQRAMVALFHDMM 181
Query: 1420 HKEIEVYVDDMIVKSVTEEDHVKYLQKMFQRLRKYKLRLNPNKCTFGVRSGKLLGFIVSQ 1479
HKEIEVYVDDMI KS TE +H+ L K+F RL+KY+L+LNP KCTFGV+SGKLLGFIVSQ
Sbjct: 182 HKEIEVYVDDMIAKSRTETEHLVNLCKLFGRLQKYQLKLNPTKCTFGVKSGKLLGFIVSQ 361
Query: 1480 KGIEVDPDKVKAI 1492
KGIE+DP+KVKA+
Sbjct: 362 KGIEIDPEKVKAL 400
>BQ628592
Length = 423
Score = 113 bits (282), Expect(2) = 7e-48
Identities = 48/61 (78%), Positives = 57/61 (92%)
Frame = -3
Query: 1612 YSMLEKTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYD 1671
YSMLE+TCC L WA+ RLR YM++HTTWL+SKMDP+KYIFEKPALTGRIARWQ+LLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1672 I 1672
I
Sbjct: 4 I 2
Score = 98.6 bits (244), Expect(2) = 7e-48
Identities = 43/76 (56%), Positives = 59/76 (77%)
Frame = -1
Query: 1532 LRKEQGIVWTEDCQKAFDSIKKYLLEPPILIPPVEGRPLIMYLTVLENSMGCVLGQQDET 1591
L K Q I+W + Q+AF+ IK+ L P +L+PPV GRP ++Y+T+L+ SMGCVL Q D++
Sbjct: 423 LPKNQAILWNSNYQEAFEKIKQSLANPSVLMPPVTGRPFLLYMTMLDESMGCVLVQHDDS 244
Query: 1592 GRKEHAIYYLSKKFTE 1607
G+KE AIYYLSKKFT+
Sbjct: 243 GKKEQAIYYLSKKFTD 196
>AW184779
Length = 432
Score = 111 bits (277), Expect(3) = 2e-47
Identities = 50/74 (67%), Positives = 58/74 (77%)
Frame = +1
Query: 1926 LNGDILYKRNFDTVLLRCVDKYEADLLIHEIHEGSFGIHPNGHTMAKKILRAGYYWMTME 1985
L+ +ILYKRN D VLLRCVD EA+ ++ E+HEGSFG H N H MA+KILR GYYW+TME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1986 SDCYKHTRKCHKCQ 1999
SDC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 85.5 bits (210), Expect(3) = 2e-47
Identities = 38/47 (80%), Positives = 43/47 (90%)
Frame = +3
Query: 2023 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVK 2069
MWGID+IG IEPKASNGH FILVAIDYFTKWVEA SYA+VT+ VV++
Sbjct: 291 MWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
Score = 34.3 bits (77), Expect(3) = 2e-47
Identities = 11/23 (47%), Positives = 18/23 (77%)
Frame = +2
Query: 1999 QIYADKIHMPPTTLNLLSSPWPF 2021
Q +AD ++ PP LN+L++PWP+
Sbjct: 224 QTFADNVNAPPIPLNVLAAPWPY 292
>NP395547 reverse transcriptase [Glycine max]
Length = 762
Score = 187 bits (476), Expect = 4e-47
Identities = 97/252 (38%), Positives = 146/252 (57%), Gaps = 18/252 (7%)
Frame = +1
Query: 1289 IKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKV------------------RMCVDY 1330
+++EV K ++AG + + W++ + VPKK G RMC+DY
Sbjct: 1 VRKEVFKLLEAGLIYPISDSSWVSPVQVVPKKGGMTVVKNDRNELIPTRRVTRWRMCIDY 180
Query: 1331 RDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGT 1390
R LN+A+ KD +PLP +D ++ A+ + F+DG+SGYNQI + P+D+EKT+F P+
Sbjct: 181 RKLNEATRKDHYPLPFMDQMLKRLARQSFYRFLDGYSGYNQIAVDPQDQEKTAFTCPFSV 360
Query: 1391 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQR 1450
F Y+ MPFGL NA T+QR M +F DM+ K IEV++DD + + + L+K+ QR
Sbjct: 361 FAYRRMPFGLCNASTTFQRCMMAIFDDMVEKCIEVFMDDFSFFGASFGNCLANLEKVLQR 540
Query: 1451 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGR 1510
K L LN KC F V+ G +LG +S++GIEV +K+ I ++P P K + FLG
Sbjct: 541 CEKSNLVLNWEKCHFMVQEGIVLGHKISKRGIEVVKEKLDVIDKLPPPVNVKGIHSFLGH 720
Query: 1511 LNYISRFISHMT 1522
+ + RFI T
Sbjct: 721 VGFYRRFIKDFT 756
>NP395548 reverse transcriptase [Glycine max]
Length = 762
Score = 179 bits (455), Expect = 1e-44
Identities = 93/252 (36%), Positives = 144/252 (56%), Gaps = 18/252 (7%)
Frame = +1
Query: 1289 IKEEVQKQIDAGFLITSNYPQWLANIVPVPKKDGKV------------------RMCVDY 1330
+++EV K ++ G + + W++ ++ V KK+G ++C+DY
Sbjct: 1 VRKEVLKLLEVGLIYPISDSAWVSPVLVVSKKEGMTVIRNEKNDLIPTRTVTSWKLCIDY 180
Query: 1331 RDLNKASPKDDFPLPHIDVLVDSTAKSKVFSFMDGFSGYNQIKMAPEDREKTSFITPWGT 1390
R LN+A+ KD FPLP +D +++ A + F+D + GYNQI + P+D+EK +F P+G
Sbjct: 181 RKLNEATRKDHFPLPFMDQMLERLAGHAYYCFLDAYFGYNQIVVDPKDQEKMAFTCPFGV 360
Query: 1391 FCYKVMPFGLINAGATYQRGMTTLFHDMIHKEIEVYVDDMIVKSVTEEDHVKYLQKMFQR 1450
F Y+ +PFGL NA T+Q M +F D++ K IEV++DD V + E +K L+ + QR
Sbjct: 361 FAYRRIPFGLCNAPTTFQMCMLAIFADIVEKSIEVFMDDFSVFVPSLESCLKKLEMVLQR 540
Query: 1451 LRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVKAIREMPAPRTEKEVRGFLGR 1510
+ L LN KC F VR G +LG +S +GIEVD K+ I ++P P K +R FLG+
Sbjct: 541 CVETNLVLNWEKCHFMVREGIVLGHKISTRGIEVDQTKIDVIEKLPPPSNVKGIRSFLGQ 720
Query: 1511 LNYISRFISHMT 1522
+ RFI T
Sbjct: 721 ARFYRRFIKDFT 756
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
partial (8%)
Length = 1320
Score = 172 bits (435), Expect = 2e-42
Identities = 77/154 (50%), Positives = 115/154 (74%), Gaps = 2/154 (1%)
Frame = +3
Query: 1167 SPNFEFHVYEAEEEENEEI--PDEISRLLEQEKKTIQPYGDELEVINLGTKEDKKEIKVG 1224
S +FE + + E+E NE++ P E+ R++ E + + P+ +E E+++LG+ K+E+K+G
Sbjct: 858 SIDFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLGSGSGKREVKIG 1037
Query: 1225 ASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECPPVKQKLRRTRPD 1284
+ +++++I LL++Y D+FAWSYQDMPGL +DIV H LPL PEC PVKQKLRR +P+
Sbjct: 1038 TGITAPIREELIILLRDYQDIFAWSYQDMPGLSSDIVQHRLPLNPECSPVKQKLRRMKPE 1217
Query: 1285 MALKIKEEVQKQIDAGFLITSNYPQWLANIVPVP 1318
+LKIKEEV+K DAGFL + YP+W+ANIVP+P
Sbjct: 1218 TSLKIKEEVKK*FDAGFLAVARYPKWVANIVPIP 1319
Score = 70.5 bits (171), Expect = 8e-12
Identities = 67/218 (30%), Positives = 93/218 (41%), Gaps = 26/218 (11%)
Frame = +1
Query: 988 PWIHEAGAVTSTLHQKLKFVKNGKLVTVNGEEALLVSHLSSFSFI-GADNVEGTPFQGFT 1046
PWIH G V STLHQKLKFV G LV V+GEE +LVS SS ++ A+ T FQ F
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 1047 IEDKNTKRNEASISSLKDAQKVI-----------------QAGGSTSWGKLIELPENKHR 1089
+ ++ + L DA ++ GG TS LI N+ +
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITS---LINTQGNRGK 351
Query: 1090 EGLGFFPSTG----LSTAKKGTFHSSGFIHAIIGDDPESVPRGFITPGVSSHNWVAI--- 1142
GLG+ P+ +K + SS + G P + R FI+ G+ V
Sbjct: 352 YGLGYKPTQADMKRSIAGRKNSGQSSRWRQESEGSPPCHISRSFISAGLGDKGQVFAICE 531
Query: 1143 -DVPFVAHLSKLEIDEPVEQHNPMISPNFEFHVYEAEE 1179
DVP S L++ P P+F+ + EE
Sbjct: 532 DDVP-----STLDLVRP-------CPPDFQLGNWRVEE 609
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 145 bits (366), Expect = 2e-34
Identities = 66/137 (48%), Positives = 103/137 (75%)
Frame = +1
Query: 829 SKISIMSLLLNSEAHKDALMKVLEQAFVDYDVTVGQFGGIVGNITACNNLSFSDEELPAE 888
+++S++ LL++SE H+ L+KVL +A V D++V FGG+V NITA N L+F++EE+PAE
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 889 GRNHNRALHISVNCKTDALSNVLVDTGSSLNVLSKTTYTQLAYQGAPLRRSGVMVKAFDG 948
GR HN+ALH+SV C ++ VL+D G SLNV+ K+T +L + + L+ S ++V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 949 SRKDVLGEVVLPITVGP 965
+R++V GE+ LP+ +GP
Sbjct: 391 TRREVRGEIDLPVQIGP 441
>CF922341
Length = 675
Score = 124 bits (312), Expect = 4e-28
Identities = 59/124 (47%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = +1
Query: 179 KYDELRRDMKALREKGKFG-KTAYDLCLVPSVQVPHKFKIPDFEKYKGSSCPEEHLKMYV 237
K D L ++A+ + +L LVP++ P KFK+ DF+KYKG++CP+ HLKMY
Sbjct: 304 KLDHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKGTTCPKNHLKMYC 483
Query: 238 RRMPAYAQDDQILIYYFQESLTGPASKWYTNLDKTRIQTFRDLCEAFVEQYSYNVDMTPD 297
++M AYA+D+++LI+ FQESLTG A WYTNL+ +R+ +++DL AFV QY YN DM
Sbjct: 484 QKMGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFVRQYQYNFDMVLS 663
Query: 298 RSDL 301
R L
Sbjct: 664 RMQL 675
>BI498328
Length = 335
Score = 119 bits (299), Expect = 1e-26
Identities = 62/119 (52%), Positives = 81/119 (67%), Gaps = 2/119 (1%)
Frame = +1
Query: 1676 SQKAIKGSILADHLAHQPLEDYRPIKFDFPDEEIMYLKMKDCDEPLFGEGPDPDSV--WG 1733
+QKA+KGS LAD+LA PL+ YRP+ +FPDE+IM LF E + + W
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIM---------ALFEEKRTHEDINKWI 156
Query: 1734 LIFDGAVNVYGNGIGAVLLTPKGAHIPFTARLRFDCTNNIAEYEACIMGIEEAIDLRIK 1792
+ FDGA N G+G+GAVL++P IPFTARL FDCTNN+AEYEAC +G++ AID +K
Sbjct: 157 VCFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BG839293
Length = 781
Score = 117 bits (292), Expect = 8e-26
Identities = 54/124 (43%), Positives = 83/124 (66%), Gaps = 2/124 (1%)
Frame = +1
Query: 1155 IDEPVEQHNPMISPNFEFHVYEAEEEENEEI--PDEISRLLEQEKKTIQPYGDELEVINL 1212
+ E +P+I NFE + E+E NE++ P E+ R++ E + + P+ +E E+++L
Sbjct: 364 VPEGTNTWDPLI--NFEQETSQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDL 537
Query: 1213 GTKEDKKEIKVGASLETSVKKQVIELLKEYVDVFAWSYQDMPGLDTDIVVHHLPLKPECP 1272
G K+E+K+G + +++++I LLK+Y D+FAWSYQDMPGL +DIV H LPL PEC
Sbjct: 538 GIGSGKREVKIGTGITAPIREELIILLKDYQDIFAWSYQDMPGLSSDIVQHQLPLNPECS 717
Query: 1273 PVKQ 1276
PVKQ
Sbjct: 718 PVKQ 729
>BI316922
Length = 405
Score = 103 bits (257), Expect = 9e-22
Identities = 49/135 (36%), Positives = 81/135 (59%)
Frame = +3
Query: 1955 EIHEGSFGIHPNGHTMAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNL 2014
E+H G G+H M ++LR GYY TM C ++ +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 2015 LSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNH 2074
+ +PWPF++ G+D++ R P + +++LV ID FTKW+E A ++ V KF+ +
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 2075 IICRYGIPNRIITDN 2089
I+C +GIPN +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>BE804087
Length = 160
Score = 86.7 bits (213), Expect = 1e-16
Identities = 41/53 (77%), Positives = 45/53 (84%)
Frame = +2
Query: 2124 EAANKNIKRIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEA 2176
EAANKNIK+ + KM V+YKDWHEM FALH YRT VRTSTGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 82.0 bits (201), Expect = 3e-15
Identities = 41/126 (32%), Positives = 67/126 (52%)
Frame = +2
Query: 1970 MAKKILRAGYYWMTMESDCYKHTRKCHKCQIYADKIHMPPTTLNLLSSPWPFSMWGIDMI 2029
++ +L++ +Y ++ D Y H + C+KCQ L+ + F WGID +
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEIFDYWGIDFV 181
Query: 2030 GRIEPKASNGHRFILVAIDYFTKWVEAASYANVTKQVVVKFIKNHIICRYGIPNRIITDN 2089
G P SN +ILV +DY +KWVEA + ++V+KF+K I R G+P +I +
Sbjct: 182 GPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLIDNG 355
Query: 2090 GTNLNN 2095
G++L N
Sbjct: 356 GSHLCN 373
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 75.1 bits (183), Expect = 3e-13
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = -3
Query: 2098 MKELCDDFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVV-TYKDWHEMLPFALHGYR 2156
M L + + H S+PY PQ NG E +N+ IKRI++K+V + KDW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 2157 TSVRTSTGATPFSLVYGMEAVLPVEVEIPSLRVLMEADLSEAEWVQNRYDQLNLIEEKRM 2216
T+ + G +P+ +V+G LPVE+E + + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 2217 TA 2218
A
Sbjct: 16 EA 11
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,945,518
Number of Sequences: 63676
Number of extensions: 1521945
Number of successful extensions: 14474
Number of sequences better than 10.0: 300
Number of HSP's better than 10.0 without gapping: 10403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12776
length of query: 2306
length of database: 12,639,632
effective HSP length: 112
effective length of query: 2194
effective length of database: 5,507,920
effective search space: 12084376480
effective search space used: 12084376480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC148289.13