BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148289.12 - phase: 0
(214 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203261 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI,... 382 e-107
TC203252 similar to GB|BAA11677.1|1181599|CUSPSALG subunit of ph... 333 3e-94
BF067590 similar to GP|29468504|gb photosystem I subunit XI {Nic... 250 4e-67
BE803732 similar to GP|1181599|dbj subunit of photosystem I {Cuc... 249 5e-67
AW279222 similar to GP|1181599|dbj subunit of photosystem I {Cuc... 232 8e-62
CD416344 similar to GP|1181599|dbj subunit of photosystem I {Cuc... 202 7e-53
AW279261 similar to GP|1181599|dbj subunit of photosystem I {Cuc... 181 2e-46
TC203879 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI,... 160 4e-40
AW620626 weakly similar to SP|P23993|PSAL_ Photosystem I reactio... 159 9e-40
BF068248 similar to SP|Q41385|PSAL_ Photosystem I reaction cente... 147 3e-36
BE801965 weakly similar to SP|Q41385|PSAL Photosystem I reaction... 140 3e-34
BG315714 similar to GP|29468504|gb| photosystem I subunit XI {Ni... 139 1e-33
BE803907 similar to GP|29468504|gb| photosystem I subunit XI {Ni... 109 1e-24
BE803668 weakly similar to GP|1181599|dbj| subunit of photosyste... 103 8e-23
BE802264 similar to SP|Q41385|PSAL_ Photosystem I reaction cente... 100 8e-22
BE804939 weakly similar to GP|29468504|gb| photosystem I subunit... 95 2e-20
BF068397 weakly similar to GP|29468504|gb| photosystem I subunit... 88 3e-18
TC203583 homologue to UP|Q84UU0 (Q84UU0) Photosystem I subunit X... 85 3e-17
AI900205 79 2e-15
TC203889 homologue to GB|BAA84771.1|6006283|AB015861 photosystem... 55 4e-13
>TC203261 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI, partial
(88%)
Length = 997
Score = 382 bits (982), Expect = e-107
Identities = 185/214 (86%), Positives = 199/214 (92%)
Frame = +1
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI 60
MAAASPMASQLKS+FTR LV P+GL SSPLH +PSRRQF+FTVKAIQSEKP YQVIQPI
Sbjct: 205 MAAASPMASQLKSTFTRTLVAPKGLSASSPLHLVPSRRQFSFTVKAIQSEKPTYQVIQPI 384
Query: 61 NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPL 120
NGDPFIGSLETPVTSSPL+AWYLSNLP YRTAV+PLLRGIEVGLAHG+ LVGPFVKAGPL
Sbjct: 385 NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGYLLVGPFVKAGPL 564
Query: 121 RNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTAD 180
RNTE AG AGSLAA GL+VILS+CLTIYG+SSFNEG PS APSLTLTGRKK+PD LQTAD
Sbjct: 565 RNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGAPSTAPSLTLTGRKKEPDQLQTAD 744
Query: 181 GWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
GW+KFTGGFFFGGISGV WAYFLLYVLDLPY++K
Sbjct: 745 GWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYIK 846
>TC203252 similar to GB|BAA11677.1|1181599|CUSPSALG subunit of photosystem I
{Cucumis sativus;} , partial (80%)
Length = 823
Score = 333 bits (855), Expect(2) = 3e-94
Identities = 158/181 (87%), Positives = 171/181 (94%)
Frame = +1
Query: 34 LPSRRQFNFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAV 93
LPS+ QF+FTV+AIQSEKP YQVIQPINGDPFIGSLETPVTSSPL+AWYLSNLP YRTAV
Sbjct: 106 LPSKXQFSFTVRAIQSEKPTYQVIQPINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAV 285
Query: 94 NPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSF 153
+PLLRGIEVGLAHG+ LVGPFVKAGPLRNTE AG AGSLAA GL+VILS+CLTIYG+SSF
Sbjct: 286 SPLLRGIEVGLAHGYLLVGPFVKAGPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSF 465
Query: 154 NEGDPSIAPSLTLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFV 213
NEGDPS APSLTLTGRKK+PD LQTADGW+KFTGGFFFGGISGV WAYFLLYVLDLPY++
Sbjct: 466 NEGDPSTAPSLTLTGRKKEPDQLQTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYI 645
Query: 214 K 214
K
Sbjct: 646 K 648
Score = 28.9 bits (63), Expect(2) = 3e-94
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = +2
Query: 8 ASQLKSSFTRPLVTPRGLCGSSP 30
ASQLKS+FT+ LV GL SP
Sbjct: 26 ASQLKSTFTKTLVAXXGLSXXSP 94
>BF067590 similar to GP|29468504|gb photosystem I subunit XI {Nicotiana
attenuata}, partial (58%)
Length = 526
Score = 250 bits (638), Expect = 4e-67
Identities = 123/174 (70%), Positives = 141/174 (80%)
Frame = +2
Query: 4 ASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPINGD 63
A PMASQLK +FTR L P+GL S PLH +PS+RQF++TV AIQS+KP YQVIQPINGD
Sbjct: 5 ACPMASQLKFTFTRTLEAPKGLSASPPLHLVPSKRQFSYTVHAIQSQKPTYQVIQPINGD 184
Query: 64 PFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNT 123
PFIGSLETP+TSSPL+AWYLSNLP YRT V+PLLRGI+VGLAHG+ L GPF KAGPLRNT
Sbjct: 185 PFIGSLETPLTSSPLIAWYLSNLPAYRTEVSPLLRGIDVGLAHGYLLEGPFEKAGPLRNT 364
Query: 124 EYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQ 177
E AG AGSL A L+VILS+CLTIY +SSF + A L LTGRK +PD +Q
Sbjct: 365 EIAGQAGSLTAGWLVVILSLCLTIYEISSFYDRATYTAAELNLTGRKNEPDQIQ 526
>BE803732 similar to GP|1181599|dbj subunit of photosystem I {Cucumis
sativus}, partial (64%)
Length = 550
Score = 249 bits (637), Expect = 5e-67
Identities = 126/183 (68%), Positives = 143/183 (77%)
Frame = +2
Query: 2 AAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPIN 61
AAASPMA+QLKS+FTR LV P+GL SSPLH +PSR+QF+FTVKAIQSEKP YQVIQPIN
Sbjct: 2 AAASPMANQLKSTFTRTLVAPKGLSASSPLHLMPSRKQFSFTVKAIQSEKPTYQVIQPIN 181
Query: 62 GDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLR 121
DPFI SLETP TSSPL+ WYLSNLP YRT V+PLLR I VGLAH + LVGPF+KA PL+
Sbjct: 182 SDPFIESLETPXTSSPLITWYLSNLPTYRTTVSPLLRRIXVGLAHRYLLVGPFIKARPLK 361
Query: 122 NTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTADG 181
NT+ SL LI+IL++ LTIY +SSFNE PS PSLTLT KK PD LQT+D
Sbjct: 362 NTKITKQTNSLTTNRLIIILNLDLTIYKISSFNERTPSTTPSLTLTSHKKNPDQLQTSDN 541
Query: 182 WSK 184
K
Sbjct: 542 KPK 550
>AW279222 similar to GP|1181599|dbj subunit of photosystem I {Cucumis
sativus}, partial (55%)
Length = 508
Score = 232 bits (592), Expect = 8e-62
Identities = 118/169 (69%), Positives = 136/169 (79%)
Frame = +2
Query: 2 AAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPIN 61
AAASPMASQLKS+FTR LVTP+GL SSPLH +PS++QFNFTVKAIQS+KP YQVIQPIN
Sbjct: 2 AAASPMASQLKSTFTRTLVTPKGLSASSPLHLVPSKKQFNFTVKAIQSKKPTYQVIQPIN 181
Query: 62 GDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLR 121
GDPFIGSLETPVTS+PL+ WYLSNLP Y+TAV+PLLR I+VGLAH + LVGPF KA PL+
Sbjct: 182 GDPFIGSLETPVTSNPLITWYLSNLPAYKTAVSPLLRRIKVGLAHRYLLVGPFXKAEPLK 361
Query: 122 NTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRK 170
NT SLA + LIVIL++ LTIY +SSF E S+ L L RK
Sbjct: 362 NTXITRQTDSLATSRLIVILNLYLTIYKISSFTEKPHSLLRRLPLQARK 508
>CD416344 similar to GP|1181599|dbj subunit of photosystem I {Cucumis
sativus}, partial (50%)
Length = 624
Score = 202 bits (515), Expect = 7e-53
Identities = 94/110 (85%), Positives = 102/110 (92%)
Frame = -2
Query: 105 AHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSL 164
AHG+ LVGPFVKAGPLRNTE AG AGSLAA GL+VILS+CLTIYG+SSFNEGDPS APSL
Sbjct: 467 AHGYLLVGPFVKAGPLRNTEIAGQAGSLAAGGLVVILSLCLTIYGISSFNEGDPSTAPSL 288
Query: 165 TLTGRKKQPDPLQTADGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214
TLTGRKK+PD L TADGW+KFTGGFFFGGISGV WAYFLLYVLDLPY++K
Sbjct: 287 TLTGRKKEPDQLPTADGWAKFTGGFFFGGISGVIWAYFLLYVLDLPYYIK 138
>AW279261 similar to GP|1181599|dbj subunit of photosystem I {Cucumis
sativus}, partial (52%)
Length = 346
Score = 181 bits (459), Expect = 2e-46
Identities = 87/115 (75%), Positives = 97/115 (83%)
Frame = +2
Query: 59 PINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAG 118
PINGDPFIGSLETPVTSSPL+AWYLSNLP YRTAV+PLLRGIEVGLAH + LVGPF+KAG
Sbjct: 2 PINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHRYLLVGPFMKAG 181
Query: 119 PLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQP 173
PL NTE AG A SL + GLI+IL++CLTIY +SSFN+ PS P LTLT KK P
Sbjct: 182 PLMNTEIAGQADSLTSGGLIIILNLCLTIYKISSFNKRTPSTTPFLTLTNHKKDP 346
>TC203879 similar to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI, partial
(35%)
Length = 398
Score = 160 bits (405), Expect = 4e-40
Identities = 77/92 (83%), Positives = 84/92 (90%)
Frame = +2
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPI 60
MAAASPMASQLKS+FT+ LV P+GL SSP H LPS+RQF+FTV+AIQSEKP YQVIQPI
Sbjct: 122 MAAASPMASQLKSTFTKTLVAPKGLSASSPFHLLPSKRQFSFTVRAIQSEKPTYQVIQPI 301
Query: 61 NGDPFIGSLETPVTSSPLVAWYLSNLPGYRTA 92
NGDPFIGSLETPVTSSPL+AWYLSNLP YRTA
Sbjct: 302 NGDPFIGSLETPVTSSPLIAWYLSNLPAYRTA 397
>AW620626 weakly similar to SP|P23993|PSAL_ Photosystem I reaction center
subunit XI chloroplast precursor (PSI-L) (PSI subunit
V). [Barley], partial (34%)
Length = 361
Score = 159 bits (402), Expect = 9e-40
Identities = 80/120 (66%), Positives = 94/120 (77%)
Frame = +2
Query: 2 AAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPIN 61
A ASP+ASQLKS+F++ LV+PRGLC SSPLH PSR Q+ F+V AIQSEKP YQ I PIN
Sbjct: 2 ACASPVASQLKSTFSKTLVSPRGLCVSSPLHLAPSRAQYIFSVSAIQSEKPTYQEIHPIN 181
Query: 62 GDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLR 121
GDPFI SL+TPVT SP + W+L NLP YRTA +PLLR I+VGLAH + LV PF A L+
Sbjct: 182 GDPFIESLDTPVTYSP*IVWHLYNLPVYRTAESPLLREIDVGLAHIYLLVRPFENAASLK 361
>BF068248 similar to SP|Q41385|PSAL_ Photosystem I reaction center subunit XI
chloroplast precursor (PSI-L) (PSI subunit V).
[Spinach], partial (32%)
Length = 352
Score = 147 bits (372), Expect = 3e-36
Identities = 72/117 (61%), Positives = 88/117 (74%)
Frame = +2
Query: 2 AAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPIN 61
AAA+PMASQLK +FT+ LVT +GL SSPLH LPS+RQF++TV+AIQSE P YQVIQPI
Sbjct: 2 AAATPMASQLKCTFTKTLVTAKGLSASSPLHLLPSKRQFSYTVRAIQSENPTYQVIQPIK 181
Query: 62 GDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAG 118
GDPFIG LET +TS+ L+AW+LSNL Y TA N LL G G G+ ++ P+ G
Sbjct: 182 GDPFIGRLETTITSNTLIAWHLSNLTAYTTAGNTLLTGT*AGAGPGYLMLSPYSTPG 352
>BE801965 weakly similar to SP|Q41385|PSAL Photosystem I reaction center
subunit XI chloroplast precursor (PSI-L) (PSI subunit
V). [Spinach], partial (50%)
Length = 379
Score = 140 bits (354), Expect = 3e-34
Identities = 75/126 (59%), Positives = 88/126 (69%)
Frame = +2
Query: 25 LCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTSSPLVAWYLS 84
L S+PLH LPS Q +F+V+A+QSE YQVI P GDPFI + ET VTS+P +AWYLS
Sbjct: 2 LYASAPLHLLPSNTQESFSVRALQSETQTYQVI*PFYGDPFIATHETTVTSTP*IAWYLS 181
Query: 85 NLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLIVILSIC 144
NLP Y TA +PLLR I VGL H + LVG VK PL NTE A A S+A+ L VILS
Sbjct: 182 NLPAYTTAGSPLLRRI*VGLTHHYLLVGSSVKDRPLMNTEIASQASSIASGALEVILSTV 361
Query: 145 LTIYGV 150
LTIYG+
Sbjct: 362 LTIYGI 379
>BG315714 similar to GP|29468504|gb| photosystem I subunit XI {Nicotiana
attenuata}, partial (28%)
Length = 298
Score = 139 bits (350), Expect = 1e-33
Identities = 72/99 (72%), Positives = 78/99 (78%)
Frame = +2
Query: 5 SPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPINGDP 64
S MASQLKS+FT+ LV +GL G SPLH L S++QFNFT KAI SEKP Y VIQPIN DP
Sbjct: 2 SSMASQLKSTFTKTLVASKGLSGFSPLHLLASKKQFNFTGKAIPSEKPTYSVIQPINRDP 181
Query: 65 FIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVG 103
FIGSLETPVT +PL YL NLP YRTAVNPLLR I VG
Sbjct: 182 FIGSLETPVTFNPLDGLYLLNLPAYRTAVNPLLRRIXVG 298
>BE803907 similar to GP|29468504|gb| photosystem I subunit XI {Nicotiana
attenuata}, partial (7%)
Length = 529
Score = 109 bits (272), Expect = 1e-24
Identities = 66/171 (38%), Positives = 94/171 (54%)
Frame = +2
Query: 3 AASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPING 62
AASP+ QL S+ + L PR LC S H P ++ F+V A SEKP+Y V ++G
Sbjct: 8 AASPLGHQLTSTSSWTLGDPRVLCDLSQRHLPPYMKRTLFSVYACPSEKPSYHVNDAVDG 187
Query: 63 DPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGPLRN 122
P++ S T P++ W+LSNL YRT VN +L I+VGL + +VGP A L N
Sbjct: 188 YPYMESHLTGTPIIPVILWFLSNLDAYRTVVNCILIWIDVGLPARYVIVGPLTIATTLMN 367
Query: 123 TEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQP 173
T + S + + LT+YG+ +++ AP LTLTGRK++P
Sbjct: 368 TTIDWLSDSHSLPWALGDPHTVLTLYGIICYSDRCQCTAP*LTLTGRKREP 520
>BE803668 weakly similar to GP|1181599|dbj| subunit of photosystem I {Cucumis
sativus}, partial (18%)
Length = 400
Score = 103 bits (256), Expect = 8e-23
Identities = 60/133 (45%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Frame = +2
Query: 57 IQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVK 116
I PING+P I SL T VTS+PL++ YL NL YRTA PLLR I+V L GP +
Sbjct: 2 IHPINGEPLIRSLITSVTSNPLIS*YLCNLIAYRTAATPLLRWIKVDLTSRIRFCGPML* 181
Query: 117 AGPL-RNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDP 175
P +++ S G A G + I S+CLT+Y +SS NE PS + LTG +P
Sbjct: 182 CRPC*ERSDHRASCGLYPADGTVAIFSLCLTVYVISSLNERAPSTDLMIILTGLMIEPYQ 361
Query: 176 LQTADGWSKFTGG 188
LQTAD ++ T G
Sbjct: 362 LQTADVLARSTQG 400
>BE802264 similar to SP|Q41385|PSAL_ Photosystem I reaction center subunit XI
chloroplast precursor (PSI-L) (PSI subunit V).
[Spinach], partial (43%)
Length = 307
Score = 99.8 bits (247), Expect = 8e-22
Identities = 56/102 (54%), Positives = 62/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 38 RQFNFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAV-NPL 96
RQ +FTV+AIQ KP YQVIQP+ GDPFI P PL L P PL
Sbjct: 2 RQLSFTVRAIQL*KPTYQVIQPVYGDPFIAMP*IPSYIHPLDCMVLIEPPRIHDPE*GPL 181
Query: 97 LRGIEVGLAHGFFLVGPFVKAGPLRNTEYAGSAGSLAAAGLI 138
L I VGL+HG+ LVGPFV AGPLRNTE G AGSL GL+
Sbjct: 182 LSRIYVGLSHGYLLVGPFVNAGPLRNTEITGHAGSLVVGGLV 307
>BE804939 weakly similar to GP|29468504|gb| photosystem I subunit XI
{Nicotiana attenuata}, partial (29%)
Length = 295
Score = 95.1 bits (235), Expect = 2e-20
Identities = 52/87 (59%), Positives = 61/87 (69%)
Frame = +2
Query: 16 TRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTS 75
TR L +GL PL+ PSRR N T KAIQS KP Y +IQP N DPFIGS++TPVTS
Sbjct: 32 TRTLEAAKGLSELFPLYLGPSRRACNITDKAIQS*KPTY*LIQPTNRDPFIGSMDTPVTS 211
Query: 76 SPLVAWYLSNLPGYRTAVNPLLRGIEV 102
SP A SNLP Y+TA++PLLR I+V
Sbjct: 212 SPKTA*N*SNLPAYKTALSPLLRRIDV 292
>BF068397 weakly similar to GP|29468504|gb| photosystem I subunit XI
{Nicotiana attenuata}, partial (33%)
Length = 223
Score = 87.8 bits (216), Expect = 3e-18
Identities = 45/73 (61%), Positives = 54/73 (73%)
Frame = +2
Query: 41 NFTVKAIQSEKPNYQVIQPINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGI 100
+F KAIQ P Y VIQ I+G+PFI +LE P+TSSPL+A LSNLP Y TA++PLL I
Sbjct: 5 SFPAKAIQ*HTPPYNVIQTIDGNPFILNLEPPLTSSPLIA*DLSNLPAYITALSPLLTEI 184
Query: 101 EVGLAHGFFLVGP 113
EV L HG+ LVGP
Sbjct: 185 EVSLGHGYLLVGP 223
>TC203583 homologue to UP|Q84UU0 (Q84UU0) Photosystem I subunit XI, partial
(6%)
Length = 398
Score = 84.7 bits (208), Expect = 3e-17
Identities = 42/54 (77%), Positives = 48/54 (88%)
Frame = +1
Query: 1 MAAASPMASQLKSSFTRPLVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNY 54
MAAASPMASQLKS+FTR LV P+GL SSPLH +PSRRQF+FTVKAIQSEK ++
Sbjct: 46 MAAASPMASQLKSTFTRTLVAPKGLSASSPLHLVPSRRQFSFTVKAIQSEKVHH 207
>AI900205
Length = 328
Score = 78.6 bits (192), Expect = 2e-15
Identities = 51/109 (46%), Positives = 67/109 (60%)
Frame = +2
Query: 59 PINGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAG 118
P++GD I LET TS + YL N+ GYRT LL IEVG A+ L PFVKA
Sbjct: 2 PVDGDILIVGLETTSTSRLVSD*YLLNVYGYRTRPILLLIEIEVGQAYV*LLPFPFVKAV 181
Query: 119 PLRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLT 167
P+ NT+ A S+AA L+VILS+ LT+YG+S ++ + A +LTLT
Sbjct: 182 PMTNTDIDAHAVSVAAVVLVVILSLRLTVYGISYDSDRYTATALTLTLT 328
>TC203889 homologue to GB|BAA84771.1|6006283|AB015861 photosystem I subunit
PSI-L {Arabidopsis thaliana;} , partial (35%)
Length = 439
Score = 55.5 bits (132), Expect(2) = 4e-13
Identities = 24/27 (88%), Positives = 26/27 (95%)
Frame = +2
Query: 161 APSLTLTGRKKQPDPLQTADGWSKFTG 187
APSLTLTGRKK+PD LQTADGW+KFTG
Sbjct: 359 APSLTLTGRKKEPDQLQTADGWAKFTG 439
Score = 35.4 bits (80), Expect(2) = 4e-13
Identities = 14/17 (82%), Positives = 16/17 (93%)
Frame = +3
Query: 142 SICLTIYGVSSFNEGDP 158
S+CLTIYG+SSFNEG P
Sbjct: 300 SLCLTIYGISSFNEGAP 350
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,513,541
Number of Sequences: 63676
Number of extensions: 131095
Number of successful extensions: 724
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of query: 214
length of database: 12,639,632
effective HSP length: 93
effective length of query: 121
effective length of database: 6,717,764
effective search space: 812849444
effective search space used: 812849444
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC148289.12