TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148241.10 - phase: 1 /pseudo
         (611 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC214660 similar to UP|Q6XJG1 (Q6XJG1) 26S proteasome subunit RP...    29  5.3
TC223684 similar to UP|Q8H6T7 (Q8H6T7) Calmodulin-binding protei...    28  9.1

>TC214660 similar to UP|Q6XJG1 (Q6XJG1) 26S proteasome subunit RPN6a
           (Fragment), partial (42%)
          Length = 778

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -3

Query: 457 TRWGSHFNSICSLISMYGATCPVLKIIAKDAKKIAQRADADSSYNH 502
           TRW +H   +  L      T P+LK+++K A  IA    + +   H
Sbjct: 527 TRWSAHATILADLT*RLSTTFPILKMVSKVAGYIASVLGSSNMTRH 390


>TC223684 similar to UP|Q8H6T7 (Q8H6T7) Calmodulin-binding protein 60-D
           (Fragment), partial (29%)
          Length = 619

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 506 FDFIFILHLMKEIMGTTDLLCQALQKQSQDVVN 538
           F F F+L L+  +M   D LC   QKQ+Q  ++
Sbjct: 392 FTFFFLLSLLCNVM---DFLCYTFQKQNQQAIS 303


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.359    0.157    0.535 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,686,409
Number of Sequences: 63676
Number of extensions: 323079
Number of successful extensions: 3154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 1390
Number of HSP's gapped (non-prelim): 1888
length of query: 611
length of database: 12,639,632
effective HSP length: 103
effective length of query: 508
effective length of database: 6,081,004
effective search space: 3089150032
effective search space used: 3089150032
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 62 (28.5 bits)