BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148219.4 + phase: 0 /pseudo
(1109 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 155 9e-38
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 144 3e-34
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 122 7e-28
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 120 4e-27
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 109 1e-26
BU548243 106 6e-23
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 100 3e-21
TC208556 91 4e-18
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 91 4e-18
BU764568 87 3e-17
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 83 6e-16
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 83 6e-16
BU549979 82 2e-15
BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {... 81 2e-15
TC213527 79 1e-14
BG508993 77 6e-14
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 77 6e-14
BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 72 2e-12
CA935263 47 2e-12
BG840035 weakly similar to GP|9294121|dbj copia-like retrotransp... 67 3e-11
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 155 bits (392), Expect = 9e-38
Identities = 87/165 (52%), Positives = 114/165 (68%), Gaps = 4/165 (2%)
Frame = +3
Query: 949 VKVFFFPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISR--SSSEAEYRALSAA 1006
+++ F D DWA C+DS +SI CFFLG+SLISW+ KQ T+SR SSSEA+YRAL++
Sbjct: 90 IQILGFSDADWATCIDSSKSITWYCFFLGSSLISWKAKKQNTVSRSSSSSEAKYRALTST 269
Query: 1007 TYELQWLLYLLNDLHVTTVKLPVLYCDNQSALH-IGTNPMFHEITKHIEIICHLVRDKLQ 1065
T ELQWL YLL DLHVT ++YCDNQSAL + ++H +EI CH+VR+K Q
Sbjct: 270 TCELQWLTYLLKDLHVT-----LIYCDNQSALQ*LPIKVIYH---GQLEIDCHIVREKTQ 425
Query: 1066 AGIIKFLL-VSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHSP 1109
G++ LL VSS +QLADIFT L P+ FS+ LS LG+ + + P
Sbjct: 426 QGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKLGLSDIFLPP 560
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 144 bits (362), Expect = 3e-34
Identities = 70/151 (46%), Positives = 92/151 (60%)
Frame = +2
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D DWAGC RRS G C F+G +L+SW++ KQ ++RSS+EAEYR+++ T EL W+
Sbjct: 32 DADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCELMWIKQ 211
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
L +L LYCDNQ+ALHI +NP+FHE TKHIEI CH +R+KL + I +
Sbjct: 212 FLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIVTEFIG 391
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
S DQ DI T L + S LG + Y
Sbjct: 392 SNDQPVDILTKSLRGPKIQIVCSKLGAYDLY 484
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 122 bits (307), Expect = 7e-28
Identities = 63/147 (42%), Positives = 90/147 (60%)
Frame = +1
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D DWAG D R+S G CF+LGN+LISW + KQ +S S++EAEY A ++ +L W+
Sbjct: 4273 DADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQ 4452
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
+L + +V + LYCDN SA++I NP+ H TKHI+I H +RD + +I V
Sbjct: 4453 MLKEYNVEQ-DVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVD 4629
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGM 1102
+++Q+ADIFT L F L LG+
Sbjct: 4630 TEEQIADIFTKALDANQFEKLRGKLGI 4710
Score = 48.1 bits (113), Expect = 2e-05
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 42 LFFDSNATCDICHFARQKQLPFH-LSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTIL 100
L + C C +Q ++ L S ELLH D+ GP+ V + +Y ++
Sbjct: 2155 LKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVV 2334
Query: 101 DDSSRFVWIVLLKSKAEVSQHVK 123
DD SRF W+ ++ K+E + K
Sbjct: 2335 DDFSRFTWVNFIREKSETFEVFK 2403
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 120 bits (300), Expect = 4e-27
Identities = 62/147 (42%), Positives = 89/147 (60%)
Frame = +1
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D DWAG D R+S G CF+LG +LISW + KQ +S S++EAEY A ++ +L W+
Sbjct: 4276 DADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQ 4455
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
+L + +V + LYCDN SA++I NP+ H TKHI+I H +RD + +I V
Sbjct: 4456 MLKEYNVEQ-DVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVD 4632
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNLGM 1102
+++Q+ADIFT L F L LG+
Sbjct: 4633 TEEQIADIFTKALDANQFEKLRGKLGI 4713
Score = 47.0 bits (110), Expect = 5e-05
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 42 LFFDSNATCDICHFARQKQLPFH-LSSSVASNKFELLHFDI*GPLIVPFIHNHKYFLTIL 100
L + C C +Q ++ L S ELLH D+ GP+ V + +Y ++
Sbjct: 2158 LKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVV 2337
Query: 101 DDSSRFVWIVLLKSKAEVSQHVK 123
DD SRF W+ ++ K++ + K
Sbjct: 2338 DDFSRFTWVNFIREKSDTFEVFK 2406
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 109 bits (272), Expect(2) = 1e-26
Identities = 52/109 (47%), Positives = 73/109 (66%)
Frame = +2
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D +WA R S G C +G +L+ W++ K ++RSS+EAEY+A++ AT EL W+
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKL 1064
LL +L + + L CDNQ+ALHI +NP+FHE TKHIEI CH VR+K+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 30.0 bits (66), Expect(2) = 1e-26
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +3
Query: 1068 IIKFLLVSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSYHS 1108
II+F VSS DQLA+IFT L + S LG Y S
Sbjct: 351 IIEF--VSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAS 467
>BU548243
Length = 599
Score = 106 bits (264), Expect = 6e-23
Identities = 58/145 (40%), Positives = 84/145 (57%)
Frame = -1
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
D WA +D RS G FLG +LISW + KQ ++SS+EAEYR+++ + EL W+
Sbjct: 587 DAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELTWIQA 408
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVS 1075
LL +L + PV+ CDN+SA+ I N +FH TKH+EI V +K+ + ++ +
Sbjct: 407 LLMELQIPFTP-PVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIP 231
Query: 1076 SKDQLADIFTNPLLPQPFSTLLSNL 1100
+ DQ A I T PL F+ L S L
Sbjct: 230 ALDQWAGILTKPLSSARFTFLKSKL 156
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 100 bits (250), Expect = 3e-21
Identities = 54/141 (38%), Positives = 82/141 (57%)
Frame = +3
Query: 964 DSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLYLLNDLHVT 1023
D R+S G FF+G++ +W + KQ ++ S+ EAEY A ++ WL LL +L +
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1024 TVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVSSKDQLADI 1083
+ + DN+SAL + NP+FHE +KHI+ H +R+ ++ +K V S+DQ ADI
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 1084 FTNPLLPQPFSTLLSNLGMLN 1104
FT PL + F L S LG+ N
Sbjct: 369 FTKPLKLETFVKLRSMLGVTN 431
>TC208556
Length = 1287
Score = 90.5 bits (223), Expect = 4e-18
Identities = 53/106 (50%), Positives = 64/106 (60%)
Frame = +3
Query: 676 FQDCRLTPQTNTSLFSVFCPHSHAYRETSR*VTHPKIAPSQARLTVEFLWNELPKRRCIL 735
FQD L+PQ N SVFCPHSH ++ETS+ V H IA SQ RL VE L + LPK RCIL
Sbjct: 663 FQDQ*LSPQINMRFPSVFCPHSHVFQETSQKVMHHIIALSQTRLIVELLNDRLPKNRCIL 842
Query: 736 LI*VVQNNSYKPSFNHAVPYLHGLMNPLIPV*FGSSRSCQEPLIVV 781
+*V N + N V +LH L PLIP+*F S C +V+
Sbjct: 843 WV*VDTN*FF*VILNRTVLHLHNLWIPLIPM*FAWSIICPPAFMVL 980
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 90.5 bits (223), Expect = 4e-18
Identities = 45/105 (42%), Positives = 64/105 (60%)
Frame = -2
Query: 984 RTMKQLTISRSSSEAEYRALSAATYELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTN 1043
++ KQ ++ S+E EY +++ T EL W+ L +L V LYCDNQ+ALHI +N
Sbjct: 697 KSKKQTVVA*XSAEVEY*SMTMVTCELMWIKQXLQELRFCEVVQMKLYCDNQAALHIASN 518
Query: 1044 PMFHEITKHIEIICHLVRDKLQAGIIKFLLVSSKDQLADIFTNPL 1088
P+FHE KHIEI CH +R+KL + I ++S DQ +I T L
Sbjct: 517 PVFHERAKHIEIDCHFIREKLLSKEIITEFINSNDQPTNILTKSL 383
>BU764568
Length = 420
Score = 87.4 bits (215), Expect = 3e-17
Identities = 42/83 (50%), Positives = 56/83 (66%)
Frame = +3
Query: 971 GQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLYLLNDLHVTTVKLPVL 1030
G C +G +LISW++ KQ +++SS+EAEYRA++ T EL WL LL +L L
Sbjct: 171 GYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMTL 350
Query: 1031 YCDNQSALHIGTNPMFHEITKHI 1053
CDNQ+ALHI +NP+FH TKHI
Sbjct: 351 ICDNQAALHIASNPIFH*RTKHI 419
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 83.2 bits (204), Expect = 6e-16
Identities = 48/137 (35%), Positives = 75/137 (54%)
Frame = -2
Query: 970 FGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLYLLNDLHVTTVKLPV 1029
FG+ + G T ++ +RSS++AEYRA++ E+ L +L +L +
Sbjct: 453 FGETWXXGG------TKNKMXXARSSAKAEYRAMAQGVCEIL*LKRILEELQLPMTLPMK 292
Query: 1030 LYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLLVSSKDQLADIFTNPLL 1089
LYCDN++A++I NP+ H TKH+EI +++K+ AG I + Q+ADIFT L
Sbjct: 291 LYCDNKAAINISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTKGLF 112
Query: 1090 PQPFSTLLSNLGMLNSY 1106
F +S L ML+ Y
Sbjct: 111 RPNFEFFVSKLDMLDIY 61
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 83.2 bits (204), Expect = 6e-16
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Frame = +1
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DW + +S G F ++ ++ + KQ I+ S+ EAEY A S + W+
Sbjct: 232 YTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAEYVAASLGACQAVWM 411
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGIIKFLL 1073
+ LL +L + K L DN+SA+++ +P H +KHIE+ H +RD++ G +
Sbjct: 412 MNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQVSKGNVTVEY 591
Query: 1074 VSSKDQLADIFTNPLLPQPF----STLLSNLGMLN 1104
+++QLAD+ T P+ F S L++NL LN
Sbjct: 592 CKAEEQLADLMTKPIQVSRFKQICSELVNNLEDLN 696
>BU549979
Length = 615
Score = 81.6 bits (200), Expect = 2e-15
Identities = 47/147 (31%), Positives = 82/147 (54%), Gaps = 2/147 (1%)
Frame = -1
Query: 949 VKVFFFPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATY 1008
++V + D D+AGC+DSRRS G F L + ++SWR+ KQ I+ S+ E E+ AT
Sbjct: 498 LEVIGYSDSDFAGCVDSRRSTSGYIFMLADGVVSWRSSKQTLIATSTMEVEFVPCFEATS 319
Query: 1009 ELQWLLYLLNDLHVT-TVKLPV-LYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQA 1066
WL ++ L V ++ P+ LYCDN +A+ + N +KHI+I ++R++++
Sbjct: 318 HGVWLKSFMSSLRVVDSISRPLKLYCDNFAAVFMAKNNKSGNRSKHIDIKYLVIRERVKE 139
Query: 1067 GIIKFLLVSSKDQLADIFTNPLLPQPF 1093
+ V+++ + D T + P+ F
Sbjct: 138 KKVVIEHVNTELMIVDPLTKGMTPKNF 58
>BG882494 weakly similar to GP|27901694|gb| gag-pol polyprotein {Vitis
vinifera}, partial (20%)
Length = 400
Score = 81.3 bits (199), Expect = 2e-15
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = -2
Query: 956 DVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWLLY 1015
DVDWAG +R C + LISW + K ++RS ++ EYRA+ A +L W
Sbjct: 318 DVDWAGSAIHKRPTCRYCVLIRGKLISWNSKKHNVVTRSRTKVEYRAM-ALICQLIWFKQ 142
Query: 1016 LLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDK 1063
L L L CDNQ+AL+I +N F TKHIEI CH VR+K
Sbjct: 141 LRKQLQFEDTMQMTLICDNQAALYIASN-QFSTRTKHIEINCHFVREK 1
>TC213527
Length = 492
Score = 78.6 bits (192), Expect = 1e-14
Identities = 40/77 (51%), Positives = 51/77 (65%)
Frame = +2
Query: 676 FQDCRLTPQTNTSLFSVFCPHSHAYRETSR*VTHPKIAPSQARLTVEFLWNELPKRRCIL 735
FQ L+PQT T FSVFCP SH ETS VT+P PSQ LT++FL + +PK CIL
Sbjct: 251 FQGP*LSPQTKTRFFSVFCPLSHTSWETSHNVTYPVTTPSQTHLTMKFLSDRIPKSICIL 430
Query: 736 LI*VVQNNSYKPSFNHA 752
L+*V+ NS+K S ++
Sbjct: 431 LV*VISINSFKASLTYS 481
>BG508993
Length = 374
Score = 76.6 bits (187), Expect = 6e-14
Identities = 39/105 (37%), Positives = 62/105 (58%)
Frame = +1
Query: 950 KVFFFPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYE 1009
K+ F D D+AG +D R+S G FF+G+ + +W + KQ ++ + EAEY A ++ T
Sbjct: 52 KLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTLFTCEAEYVAATSCTCH 231
Query: 1010 LQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIE 1054
WL LL +L + + +Y DN+SA + N +FHE +KHI+
Sbjct: 232 AIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHID 366
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 76.6 bits (187), Expect = 6e-14
Identities = 38/98 (38%), Positives = 58/98 (58%)
Frame = -2
Query: 1009 ELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKHIEIICHLVRDKLQAGI 1068
++ WL +L +L + LYCDN++A++I NP+ H+ TKH+EI H +++K+ G+
Sbjct: 502 QILWLKRILEELQLPMTLPMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGL 323
Query: 1069 IKFLLVSSKDQLADIFTNPLLPQPFSTLLSNLGMLNSY 1106
I V S Q+ADI T L F L+S L ML+ Y
Sbjct: 322 ICMPFVPSSQQVADILTKGLFRSNFEFLVSKLVMLDIY 209
>BE474381 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (20%)
Length = 406
Score = 71.6 bits (174), Expect = 2e-12
Identities = 38/84 (45%), Positives = 53/84 (62%)
Frame = +3
Query: 954 FPDVDWAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEAEYRALSAATYELQWL 1013
+ D DWAG + RRS G C F+G +L+S + KQ ++RSS+EAE+RAL+ E W+
Sbjct: 156 YTDADWAGSVTDRRSTSGYCTFVGGNLVS*-SKKQSVVARSSAEAEFRALAHGICETLWV 332
Query: 1014 LYLLNDLHVTTVKLPVLYCDNQSA 1037
LL +L V + LYCDN+SA
Sbjct: 333 KKLLQELKVHSSPPIKLYCDNKSA 404
>CA935263
Length = 446
Score = 47.0 bits (110), Expect(2) = 2e-12
Identities = 22/53 (41%), Positives = 29/53 (54%)
Frame = +1
Query: 1000 YRALSAATYELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGTNPMFHEITKH 1052
Y A++AA E+ W LL L + L C NQ+ LHI + P+FHE T H
Sbjct: 124 YCAMTAAAIEITWPRQLLQQLRFGDTQATKLICHNQATLHIASTPVFHEQTTH 282
Score = 44.7 bits (104), Expect(2) = 2e-12
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 959 WAGCLDSRRSIFGQCFFLGNSLISWRTMKQLTISRSSSEA 998
W G + RS G C +G +LISWR+ KQ T +RSS+EA
Sbjct: 3 WEGSPSNSRSTSGYCVLIGENLISWRSKKQNTFARSSAEA 122
>BG840035 weakly similar to GP|9294121|dbj copia-like retrotransposable element
{Arabidopsis thaliana}, partial (3%)
Length = 804
Score = 67.4 bits (163), Expect = 3e-11
Identities = 40/122 (32%), Positives = 60/122 (48%)
Frame = +2
Query: 983 WRTMKQLTISRSSSEAEYRALSAATYELQWLLYLLNDLHVTTVKLPVLYCDNQSALHIGT 1042
W + KQ EAEY A + A + WL +L +LH+ + + DNQ+ + I
Sbjct: 203 WSSKKQ------DXEAEYVATTTAVNQAIWLRRILANLHMEQKEPTQILVDNQTTISISN 364
Query: 1043 NPMFHEITKHIEIICHLVRDKLQAGIIKFLLVSSKDQLADIFTNPLLPQPFSTLLSNLGM 1102
N +FH TKH +I +R+ + G +K + S+DQ ADI T F L + LG+
Sbjct: 365 NHVFHGRTKHFKIKLFFLRETQREGEVKLIYCRSEDQSADILTKVFPKVRFEVLRNKLGV 544
Query: 1103 LN 1104
N
Sbjct: 545 CN 550
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.362 0.160 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,089,845
Number of Sequences: 63676
Number of extensions: 1205872
Number of successful extensions: 16761
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 9405
Number of HSP's successfully gapped in prelim test: 762
Number of HSP's that attempted gapping in prelim test: 6603
Number of HSP's gapped (non-prelim): 11333
length of query: 1109
length of database: 12,639,632
effective HSP length: 107
effective length of query: 1002
effective length of database: 5,826,300
effective search space: 5837952600
effective search space used: 5837952600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 64 (29.3 bits)
Medicago: description of AC148219.4