Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147714.8 + phase: 0 /pseudo
         (2334 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei...   151  4e-36
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...   116  1e-25
CF922488                                                              102  3e-21
CF922341                                                               96  2e-19
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    79  2e-14
NP334778 reverse transcriptase [Glycine max]                           77  1e-13
BU084093                                                               67  9e-11
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei...    64  1e-09
AW706233                                                               55  3e-07
CF921210                                                               55  4e-07
TC228885                                                               55  5e-07
TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part...    53  2e-06
BI674393                                                               52  3e-06
AW184779                                                               52  4e-06
BQ628592                                                               43  4e-06
CF922207                                                               45  3e-04
CA953191                                                               42  0.003
TC228886                                                               40  0.009
TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like,...    39  0.034
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ...    38  0.059

>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
           (Fragment), partial (3%)
          Length = 449

 Score =  151 bits (381), Expect = 4e-36
 Identities = 71/139 (51%), Positives = 104/139 (74%)
 Frame = +1

Query: 758 SKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTVDHFGSIVGNITACSNLWFSEDELPEA 817
           +++S+L LL+SS  HR  L+KVL +A+V  +++V+ FG +V NITA + L F+E+E+P  
Sbjct: 31  ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210

Query: 818 GKHHNLALHISVNCKSDMISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFNG 877
           G+ HN ALH+SV C   +++ VL+D G SLNVMPKSTLD+L +  + L+ S+ +V+AF+G
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390

Query: 878 TRKSVLGEIDLPITIGPET 896
           TR+ V GEIDLP+ IGP T
Sbjct: 391 TRREVRGEIDLPVQIGPHT 447


>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
          Length = 843

 Score =  116 bits (290), Expect = 1e-25
 Identities = 83/231 (35%), Positives = 123/231 (52%)
 Frame = +3

Query: 1919 *TLVLRHQTVLAKP*VSVGCFQPR*EDPEKIGQ*IPVRRRYSVQEKL*HGIVKMC**T*S 1978
            * LV RHQ +  K  +     +  *ED EK+G      R+++V EK  H    +C     
Sbjct: 132  *ALVFRHQAICHKQRIPARDCRQ**EDIEKVGGRFLHERKHTV*EKPRHETSAVCGCQGG 311

Query: 1979 GAVDA*CT*RYLRDPCYRAYYVKEVVTGRLLLDDHGA*LLPARQKVPQMSNLC**DSCAS 2038
             + D    *  + +   RA Y +E    RLLL  HG *LL   +++PQMS++  *  C +
Sbjct: 312  KSHDRGSP*GLVWNARQRACYGQEDPKSRLLLAYHGK*LLCPCEEMPQMSSVRR*CQCPT 491

Query: 2039 ARSQCYFIPMTVFNVGHRHDWKN*TEGFKWSSFHLSGN*LLHQVG*SSILYQCDQASGG* 2098
            A S+C+ +P+   +VG+R    +* +G +WSS H   + L HQVG  S LY+  +  GG 
Sbjct: 492  ASSECHVLPLAFLHVGNRCHRGH*AQGLEWSSLHPRSDRLFHQVGRGSFLYRRHEGCGGQ 671

Query: 2099 VHQEQHHLSIWCSQQDYYRQWYQPE*QCGASSL*RIQD*AS*LFSL*TSDE 2149
            VH E+ HL IW +++DY+ Q +QP+*Q    +L  + + AS    L   DE
Sbjct: 672  VH*ERDHLPIWFAKEDYHGQRHQPK*QDDGGNLRGV*NPASQSHXLPAKDE 824


>CF922488 
          Length = 741

 Score =  102 bits (253), Expect = 3e-21
 Identities = 77/218 (35%), Positives = 111/218 (50%)
 Frame = +2

Query: 1340 KEGW*SPDVC*LQRPEQSQSKRQISITSY*CAR**YRSV*GVLLHGWFLRLQSDQNVS*R 1399
            + GW   +V  L R + SQSK  +S T+Y  +R *+     +LLHGW  RL  D++ +  
Sbjct: 8    ERGWEGVNVRGLSRSKLSQSKG*VSFTAYQRSRG*HDQFFPILLHGWIFRL*PDKDSTRG 187

Query: 1400 *RKDVFYHSMGYLLLQSDAIRPNKCWCYLPKRDDYSLS*HDSQRSRSICG*YDCEVNR*G 1459
              KD F++SMG LLL    +   +CW  +P      +  HD+Q  R + G*+D E+   G
Sbjct: 188  YGKDNFHYSMGNLLL*GYVVWAEECWGNIPAGHGGIILGHDAQGDRGLHG*HDREIKNGG 367

Query: 1460 ATC*IFDKDVRKVEKIQASIESQQMYVRRQIRKVIRLHCQPKGH*SRS**SPGHPRNASS 1519
             T   F K V     IQ   ES+++YV  +I+KV RL+   + +          P +  +
Sbjct: 368  GTPCQFAKVV*ATT*IQVETESRKVYV*GKIQKVARLY**LERNRGGFEQGESDP*DGQA 547

Query: 1520 TDREASQRFPRTFELHLPIHISYDRNLRADLQAAQKES 1557
            T REAS RF    ELH  IHI  + +LRA      +ES
Sbjct: 548  TYREASPRFLGEVELHRKIHIIVNCHLRASFHIVVQES 661


>CF922341 
          Length = 675

 Score = 95.9 bits (237), Expect = 2e-19
 Identities = 49/133 (36%), Positives = 75/133 (55%), Gaps = 4/133 (3%)
 Frame = +1

Query: 132 TKTMEEMMEELAK--ELRHEIKANQGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNG 187
           T     +M E+ K   L   ++A +G  D      ++L LV  +  P KFK+ DFD+Y G
Sbjct: 268 TSKNPHVMAEMGKLDHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKG 447

Query: 188 LTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFK 247
            TCP+NH+  Y +KMG Y  ++ L+IH FQ+SL   A  WYT+L  + +H++ +L  AF 
Sbjct: 448 TTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFV 627

Query: 248 SHYGFNIRLKPNR 260
             Y +N  +  +R
Sbjct: 628 RQYQYNFDMVLSR 666


>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 669

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
 Frame = +3

Query: 2156 QQEYQENCPEDGNHLQGLA*DVTLCSAWLPYYCAQFNRGNPFLSCIWYGSSSSFGSGDPI 2215
            Q EYQ++ P+D   +QGLA D  +    LP + A  N GN  L  IW G   +     P+
Sbjct: 9    Q*EYQKDYPKDDRVIQGLARDAPIRVTRLPDFSANVNWGNAVLIGIWDGGCVTV*GRSPV 188

Query: 2216 SPCDHGSKVIRG*MV-PKPV*SVEFD*GKTYGCHGSWTVISSKNEDCL*QESPSSRIQGR 2274
               D G   I+G  V    +*S +  *G     H SW ++ +KNE+C+ QE   +++   
Sbjct: 189  IK-DLGRIRIKGIRVGSNAL*SAQPH*G*ALNGHESWALVPAKNEECIRQEGMLAQVP*G 365

Query: 2275 GTCIEKEDKPAT*PKGQVDA*L*RSLCCQEGLLRWCFNPYTHGWCRTPKSSECRYSQEIL 2334
              C ++       P  ++   L R+ CC+EG  R     Y HGW R   + E    Q IL
Sbjct: 366  RPCAKENVPCCQGPSREMGPELRRAFCCEEGFFRRSPGAYQHGW*RVTFTHEF*CRQAIL 545


>NP334778 reverse transcriptase [Glycine max]
          Length = 431

 Score = 76.6 bits (187), Expect = 1e-13
 Identities = 53/141 (37%), Positives = 72/141 (50%)
 Frame = +2

Query: 1347 DVC*LQRPEQSQSKRQISITSY*CAR**YRSV*GVLLHGWFLRLQSDQNVS*R*RKDVFY 1406
            DVC L R + SQSK   S T++  +  *+     +L HGW   L SD++ +    KD F+
Sbjct: 5    DVCGLSRSKPSQSKG*FSFTAHRHSHG*HGQFCPILFHGWIFGL*SDKDGTRGYGKDNFH 184

Query: 1407 HSMGYLLLQSDAIRPNKCWCYLPKRDDYSLS*HDSQRSRSICG*YDCEVNR*GATC*IFD 1466
            +SMG LLL  D +   + W  LP      +  HD+Q  R +CG* D E+   G T   F 
Sbjct: 185  YSMGNLLL*GDVVWAEEFWGNLPSGHGGIIPGHDAQGDRGLCG*NDREIKNGGGTPSQFA 364

Query: 1467 KDVRKVEKIQASIESQQMYVR 1487
            K V     IQ   ESQ++ VR
Sbjct: 365  KFVWATT*IQVETESQEVCVR 427


>BU084093 
          Length = 421

 Score = 67.0 bits (162), Expect = 9e-11
 Identities = 40/115 (34%), Positives = 53/115 (45%), Gaps = 7/115 (6%)
 Frame = -1

Query: 415 PGQPQVPVYAIAQQM---KQQLPVQQQQQNQQARPT----FPPIPMLYAELLPTLLHRGH 467
           P QP+ P    A Q+       PV      +   P     F P+PM Y +LLP+L+    
Sbjct: 346 PVQPKAPAQREAPQVPTPNTTRPVGNSNTTRNFPPRPFQEFTPLPMTYEDLLPSLIANHL 167

Query: 468 CTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTF 522
                G+    P P  +  +  C +H G  GH VE C ALKY V+ L+D G LTF
Sbjct: 166 AVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLALKYKVQHLMDAGWLTF 2


>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein (Fragment),
            partial (8%)
          Length = 1320

 Score = 63.5 bits (153), Expect = 1e-09
 Identities = 50/127 (39%), Positives = 55/127 (42%), Gaps = 17/127 (13%)
 Frame = +1

Query: 917  PWIHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE-GTAFQGLT 975
            PWIH  G V STLHQKLKF   G LV + GEE  LVS  SS   +EA      TAFQ   
Sbjct: 1    PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180

Query: 976  VEGTEPKRVGTAMASLKDA*RAVQ-------EGQAAGWG---------RLIQLRENKHKE 1019
            V              L DA  AV         G   G G          LI  + N+ K 
Sbjct: 181  VVSISSVDSLFGQPCLSDA--AVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKY 354

Query: 1020 GLGFSPT 1026
            GLG+ PT
Sbjct: 355  GLGYKPT 375



 Score = 32.0 bits (71), Expect = 3.2
 Identities = 23/72 (31%), Positives = 34/72 (46%)
 Frame = +2

Query: 1266 YFCMVV*RYARSRSYDCRASDPHQA*MSSRQAEIEKDSSRYGSQD*E*GSKTD*CGFPHD 1325
            + C+V+ RYAR     C A    ++ +   +AE EKD +R   +D     K  *  F   
Sbjct: 1097 HLCLVIPRYARFEF*HCTAPITSKSRVFPGKAETEKDEARNILEDKRRSEKVI*RWFSGR 1276

Query: 1326 SLVP*VGCQYCT 1337
              V  +GCQ+ T
Sbjct: 1277 RSVSKMGCQHRT 1312


>AW706233 
          Length = 376

 Score = 55.5 bits (132), Expect = 3e-07
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
 Frame = -3

Query: 141 ELAKELRHEIKANQGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKY 198
           E    L+   KA +G  D      ++L LV  +  P KFK+ +FD+Y G TCP+NH+  Y
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168

Query: 199 VRKMGNYKDND 209
            +KMG Y  ++
Sbjct: 167 CQKMGAYAKDE 135


>CF921210 
          Length = 790

 Score = 54.7 bits (130), Expect(2) = 4e-07
 Identities = 41/118 (34%), Positives = 55/118 (45%)
 Frame = +2

Query: 408 YHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPIPMLYAELLPTLLHRGH 467
           YH+  LP  Q + P  A  +   Q++    ++  +     F PIP+ YA+LL  LL    
Sbjct: 236 YHKVCLPHFQ*RTPPLAQTKNTNQEVNFAARKPVE-----FTPIPVSYADLLSYLLDNSM 400

Query: 468 CTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 525
                 K    PL   + S+  C    GAL H +E C ALK  V+ LID G L FE N
Sbjct: 401 VAITLAKVHQPPLF*GYDSNATCG---GALRHSIEHCRALKRKVQGLIDAGWLKFEEN 565



 Score = 19.6 bits (39), Expect(2) = 4e-07
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 385 NAAQMPPSYPYVSYSQHPF 403
           +A   P  YP   Y Q PF
Sbjct: 172 SANNKPSPYPPPRYPQRPF 228


>TC228885 
          Length = 901

 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 42/135 (31%), Positives = 58/135 (42%)
 Frame = -3

Query: 391 PSYPYVSYSQHPFFPPFYHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPP 450
           P +P +    H   P   H+  LP  Q + P  A  +   Q++    ++  +     F P
Sbjct: 761 PHHPVI----HKGHP*INHKVCLPHFQ*RTPPLAQTKNTNQEMNFAARKPVE-----FTP 609

Query: 451 IPMLYAELLPTLLHRGHCTTRQGKPAPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKYI 510
           IP+ YA+LLP LL          K    P    + S+  C  H  A G  +E   ALK  
Sbjct: 608 IPVSYADLLPYLLDNSMVAITLAKVHQPPFLREYDSNAMCACHGEAPGRSIEHYRALKRK 429

Query: 511 VKKLIDQGKLTFENN 525
           V+ LID G L FE N
Sbjct: 428 VQGLIDAGWLKFEEN 384


>TC233837 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
          Length = 402

 Score = 52.8 bits (125), Expect = 2e-06
 Identities = 41/131 (31%), Positives = 69/131 (52%)
 Frame = +1

Query: 1382 LLHGWFLRLQSDQNVS*R*RKDVFYHSMGYLLLQSDAIRPNKCWCYLPKRDDYSLS*HDS 1441
            L++GWFL + S+ + +*R R+D F H MG + L SD +R  K W  L       + *+D+
Sbjct: 4    LIYGWFLGV*SNIDGT*RCREDHFRHPMGDIQL*SDGLRAEKYWGNLSACHGGVVP*YDA 183

Query: 1442 QRSRSICG*YDCEVNR*GATC*IFDKDVRKVEKIQASIESQQMYVRRQIRKVIRLHCQPK 1501
              +R +  *+DC+V+ *  T       V KV +I    +  QM++  ++ +  R++ + +
Sbjct: 184  *GNRGLRR*HDCQVSD*DRTPCQSV*AVWKVAEIPIKTKPNQMHIWGEVGEAARIYRKSE 363

Query: 1502 GH*SRS**SPG 1512
                RS  S G
Sbjct: 364  RDRDRSRESEG 396


>BI674393 
          Length = 152

 Score = 52.0 bits (123), Expect = 3e-06
 Identities = 22/44 (50%), Positives = 37/44 (84%)
 Frame = +1

Query: 737 EILRLIKRSDYKIVDQLLQTPSKISILSLLLSSAAHRDTLLKVL 780
           E LR+I++S++K+++QL +TP+++S+L LL+SS  HR  L+KVL
Sbjct: 16  EFLRIIQQSEFKVIEQLNKTPARVSLLELLMSSEPHRALLVKVL 147


>AW184779 
          Length = 432

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = +2

Query: 2053 VGHRHDWKN*TEGFKWSSFHLSGN*LLHQVG*SSILYQCD 2092
            VGHR D  +* +GFKW+S H S N*LLHQ+G SS +  CD
Sbjct: 293  VGHRRDRSH*AQGFKWTSLHFSRN*LLHQMGRSSFVC*CD 412


>BQ628592 
          Length = 423

 Score = 42.7 bits (99), Expect(2) = 4e-06
 Identities = 27/69 (39%), Positives = 38/69 (54%)
 Frame = -3

Query: 1561 ME**MPRSF**HQELPAGTTYPRPTRGRKTFDYVFGSI**IHGMRTWSTR*NWKERTCYL 1620
            +E *+PR    +Q  P  +     T  RKTF  V   +  ++GMR  S R  W++ T +L
Sbjct: 400  VEQ*LPRGLRKNQTEPRESLGAHATCNRKTFSPVHDYVRRVYGMRVGSARRLWEKGTSHL 221

Query: 1621 LSKQEVHRL 1629
            L KQEV+RL
Sbjct: 220  LFKQEVYRL 194



 Score = 28.1 bits (61), Expect(2) = 4e-06
 Identities = 18/63 (28%), Positives = 36/63 (56%)
 Frame = -2

Query: 1631 NSVYNA*EDLLCSGLGR*TPASLFGESYDLVDIQNGSDKVYL*ESRCYWEDCTLADAFV* 1690
            + + N  +D+L  G+G  +  ++  +SY +   QNGS +++L*E+  +  +  +A   +*
Sbjct: 191  DELLNVGKDVLYLGMGVTSS*AVHAQSYHVAYFQNGSCEIHL*EAGPHGTNR*VAGTTI* 12

Query: 1691 I*Y 1693
            I Y
Sbjct: 11   IQY 3


>CF922207 
          Length = 616

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 475 PAPDPLPPRFR---SDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 525
           P   P PP FR   S+  C +H GA GH +E C   K+ V  LID G L FE N
Sbjct: 490 PTKVPQPPFFREYDSNATCAYHGGAPGHSIEHCMTPKHKV*SLIDTG*LKFEEN 329


>CA953191 
          Length = 422

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 28/58 (48%), Positives = 32/58 (54%), Gaps = 1/58 (1%)
 Frame = -3

Query: 906 INASYSCLLGRPW-IHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIE 962
           I  +Y+ L GRPW IH    V STLH K K    GKLV I  +E  LV + SS   IE
Sbjct: 420 ITPTYNGLQGRPWRIHCVKLVPSTLH*K*KIVIDGKLVIIFVKEDLLVGEPSSTPYIE 247


>TC228886 
          Length = 748

 Score = 40.4 bits (93), Expect = 0.009
 Identities = 19/42 (45%), Positives = 24/42 (56%)
 Frame = +3

Query: 484 FRSDLKCDFHQGALGHDVEGCYALKYIVKKLIDQGKLTFENN 525
           + S+  C +H GA GH +E C   K+ V  LID G L FE N
Sbjct: 153 YDSNATCAYHGGASGHSIEHCMTPKHKV*SLIDTGWLKFEEN 278


>TC232676 similar to UP|Q6K709 (Q6K709) DNA-binding protein-like, partial
           (57%)
          Length = 926

 Score = 38.5 bits (88), Expect = 0.034
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
 Frame = +1

Query: 408 YHQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPIPMLYAELLPTLLHRGH 467
           Y + PL   Q +  +  + QQ +QQ   QQQQQ QQ++     + M    L P LLH G 
Sbjct: 451 YERLPLEDDQGEEEMQ-VQQQQQQQQQQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNG- 624

Query: 468 CTTRQGKP------APDPLPPRFRSDL 488
               Q  P      AP   PP F S L
Sbjct: 625 ----QNMPHDVFWGAPPRPPPSF*SPL 693


>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
           (Corresponding sequence ZK643.8), partial (7%)
          Length = 762

 Score = 37.7 bits (86), Expect = 0.059
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
 Frame = +3

Query: 409 HQYPLPPGQPQVPVYAIAQQMKQQLPVQQQQQNQQARPTFPPIPMLYAELLPTL----LH 464
           HQ  LPP QP V       Q + Q P QQ  Q   A    PP P ++ +  P       H
Sbjct: 132 HQVELPPPQPPVQQQQQPPQQQLQQPPQQPPQQHLAPQQLPPQPPIFQQTYPPFHLPQFH 311

Query: 465 RGHCT---TRQGKPAPDPLPPRFRSDLKCDFHQ 494
               +    +Q +  P P P  F+   +   HQ
Sbjct: 312 HHQPSLQFQQQQQQPPQPPPQLFQHQAQPPSHQ 410


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.345    0.151    0.521 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,109,687
Number of Sequences: 63676
Number of extensions: 1710682
Number of successful extensions: 18207
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 12758
Number of HSP's successfully gapped in prelim test: 522
Number of HSP's that attempted gapping in prelim test: 3947
Number of HSP's gapped (non-prelim): 14846
length of query: 2334
length of database: 12,639,632
effective HSP length: 113
effective length of query: 2221
effective length of database: 5,444,244
effective search space: 12091665924
effective search space used: 12091665924
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 67 (30.4 bits)


Medicago: description of AC147714.8