BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147714.4 - phase: 0 /pseudo
(1920 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 365 e-101
TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 272 9e-73
TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, part... 214 1e-68
TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotei... 152 2e-36
AW184779 114 3e-25
BI498328 113 7e-25
BQ628592 103 5e-23
BI316922 100 5e-21
CF922341 95 3e-19
NP595172 polyprotein [Glycine max] 92 2e-18
BE804087 82 3e-15
BI321666 77 6e-14
BE660092 weakly similar to GP|9884624|dbj retroelement pol polyp... 77 1e-13
BU084093 68 3e-11
BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis ... 47 5e-09
TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotei... 58 3e-08
TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (... 57 8e-08
TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial... 56 2e-07
TC211815 45 2e-07
AW706233 55 4e-07
>TC223727 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (9%)
Length = 843
Score = 365 bits (938), Expect = e-101
Identities = 170/274 (62%), Positives = 209/274 (76%)
Frame = +1
Query: 1468 NHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDNKPWYYDIKQCLLSREYPPGASNK 1527
N D+P I+ +P+H + E D KPWY+DIK+ ++S+EY P ++
Sbjct: 46 NAARDLPYIEFWCRGKPAHCCQV--------EEERDGKPWYFDIKRYVISKEYLPEIADN 201
Query: 1528 DKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSR 1587
DK+TLRRLA+ F + G ILYKRN+DM LRCVD EA ++ +VH+G+FGTHA GH M+R
Sbjct: 202 DKRTLRRLAAGFFMSGSILYKRNHDMKPLRCVDAREANHMIEEVHEGSFGTHANGHAMAR 381
Query: 1588 KLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMVGIDMIGRI 1647
K+LRAGYYWLTME DC H RKCHKCQ +AD ++ PPH LNV+SSPWPFSM GID+IG I
Sbjct: 382 KILRAGYYWLTMESDCCVHVRKCHKCQAFADNVNAPPHPLNVMSSPWPFSMWGIDVIGAI 561
Query: 1648 EPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTN 1707
EPKASNGHRFILVAIDYFTKWVEAASYT+V + VV +FIK IICRYG+P KIITDNGTN
Sbjct: 562 EPKASNGHRFILVAIDYFTKWVEAASYTDVMRGVVVRFIKKEIICRYGLPRKIITDNGTN 741
Query: 1708 LNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAA 1741
LNN ++ +CEEFKI+HHN +PYRP++N VE A
Sbjct: 742 LNNKMMGEICEEFKIQHHNPTPYRPKMN*AVEVA 843
>TC224482 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (6%)
Length = 669
Score = 272 bits (696), Expect = 9e-73
Identities = 126/182 (69%), Positives = 157/182 (86%)
Frame = +1
Query: 1739 EAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
EAANKNIK+I+QKM +Y+DWHEMLP+ALHGYRT+VR+STGATPFSLVYGMEAVLP EVE
Sbjct: 1 EAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPFEVE 180
Query: 1799 IPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 1858
+PSLR++ E+ L E+EW Q+RYDQLNL+E KR+ AM+ G+ YQ RMK+AFDKKV R+F
Sbjct: 181 VPSLRILAESGLKESEWAQTRYDQLNLIEGKRLTAMSHGRLYQQRMKSAFDKKVCLRKFH 360
Query: 1859 EGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSGGALILTHMDGVELPNPVNADLVKK 1918
EG+LVLK+ D RGKW PNYEG +VVK+AFSGGAL+LT+MDG ELP+P+N+D+VK+
Sbjct: 361 EGDLVLKKMSHAVKDHRGKWAPNYEGPFVVKRAFSGGALVLTNMDGEELPSPMNSDVVKR 540
Query: 1919 YF 1920
Y+
Sbjct: 541 YY 546
>TC212032 similar to UP|Q6WAY3 (Q6WAY3) Gag/pol polyprotein, partial (3%)
Length = 803
Score = 214 bits (544), Expect(2) = 1e-68
Identities = 102/207 (49%), Positives = 142/207 (68%)
Frame = +2
Query: 1390 IEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPR 1449
++ AI +K L +YGDSAL+I+Q++GE ET LIPY+ Y + L +F ++ HH+
Sbjct: 206 VQAAIDSNVKLLKVYGDSALVIHQLRGECETRDPNLIPYQAYIKELAGFFDEISFHHVA* 385
Query: 1450 DENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFTIGDVIDQAGENMVDNKPWYY 1509
+ENQMADALATL SMF++ D+P I+ + RP+H + E D KPWY+
Sbjct: 386 EENQMADALATLVSMFQLTPHGDLPYIEFRCRGRPAHCCLV--------EEERDGKPWYF 541
Query: 1510 DIKQCLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 1569
DIK+ + S+EYP AS+ DK+ RRLA+ F + G ILYKRN+DMVLL CV+ E E ++
Sbjct: 542 DIKRYVESKEYPLEASDNDKRRKRRLAAGFFMSGSILYKRNHDMVLLHCVNGKEVENMLG 721
Query: 1570 DVHDGTFGTHATGHTMSRKLLRAGYYW 1596
+VH+G+FGTH+ GH M+RK+LRAGYYW
Sbjct: 722 EVHEGSFGTHSNGHAMARKILRAGYYW 802
Score = 67.0 bits (162), Expect(2) = 1e-68
Identities = 28/53 (52%), Positives = 37/53 (68%)
Frame = +1
Query: 1334 DPNSKWGLVFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEAC 1386
+ KW + FD A+N G G+GA++VSP IPFT ++ F+CTNNM EYEAC
Sbjct: 37 EDRDKWIVWFDRASNVLGHGVGAILVSPDNQCIPFTTRLGFDCTNNMAEYEAC 195
>TC232528 weakly similar to UP|Q6WAY5 (Q6WAY5) Gag/pol polyprotein
(Fragment), partial (3%)
Length = 449
Score = 152 bits (383), Expect = 2e-36
Identities = 72/139 (51%), Positives = 103/139 (73%)
Frame = +1
Query: 725 SKISILSLLLSSAAHRDTLLKVLEQAYVDHEVTLDHFGSIVGNITACSNLWFSENELPEA 784
+++S+L LL+SS HR L+KVL +A+V +++++ FG +V NITA + L F+E E+P
Sbjct: 31 ARVSLLELLMSSEPHRALLVKVLNEAHVAQDISVEGFGGLVNNITANNYLAFAEEEIPAE 210
Query: 785 GKHHNLALHISVNCTPDIISNVLVDTGSSLNVMPKSTLDQLSYRGTPLRRSTFLVKAFDG 844
G+ HN ALH+SV C I++ VL+D G SLNVMPKSTLD+L + + L+ S+ +V+AFDG
Sbjct: 211 GRGHNKALHVSVKCMDHIVAKVLIDNGYSLNVMPKSTLDKLPFNASHLKPSSMVVRAFDG 390
Query: 845 TRKSVLGEIDLPITIGPET 863
TR+ V GEIDLP+ IGP T
Sbjct: 391 TRREVRGEIDLPVQIGPHT 447
>AW184779
Length = 432
Score = 114 bits (286), Expect = 3e-25
Identities = 50/74 (67%), Positives = 60/74 (80%)
Frame = +1
Query: 1541 LDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWLTME 1600
L +ILYKRN+DMVLLRCVD EAEQ++ +VH+G+FGTHA H M++K+LR GYYWLTME
Sbjct: 1 LSRNILYKRNHDMVLLRCVDAREAEQMLVEVHEGSFGTHANIHAMAQKILRVGYYWLTME 180
Query: 1601 HDCYQHARKCHKCQ 1614
DC H KCHKCQ
Sbjct: 181 SDCCIHVWKCHKCQ 222
Score = 79.3 bits (194), Expect = 1e-14
Identities = 48/114 (42%), Positives = 59/114 (51%), Gaps = 22/114 (19%)
Frame = +3
Query: 1593 GYYWLTMEHDCY-------------QHARKCHKCQIYADKIHVPPHALNVISSPWPF--- 1636
G W T +H C+ R H C + VP ++ +P P+
Sbjct: 99 GILWNTCQHTCHGPEDSESGVLLAHYGERLLHPC---VEMP*VPVRPSLIMLTPHPYL*M 269
Query: 1637 ------SMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1684
M GID+IG IEPKASNGH FILVAIDYFTKWVEA SY +VT+ VV +
Sbjct: 270 SWQHLGHMWGIDVIGAIEPKASNGHHFILVAIDYFTKWVEAVSYASVTRSVVIR 431
>BI498328
Length = 335
Score = 113 bits (283), Expect = 7e-25
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Frame = +1
Query: 1283 TQKAIKGSILADHPAYQPLDDYQPIESDFPNEEIVYL-KSKDCEEPLIGEGPDPNSKWGL 1341
TQKA+KGS LAD+ A PL Y+P+ +FP+E+I+ L + K E + +KW +
Sbjct: 4 TQKAVKGSALADYLAQ*PLQGYRPMHPEFPDEDIMALFEEKRTHEDI--------NKWIV 159
Query: 1342 VFDGAANAYGKGIGAVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIK 1399
FDGA+NA G G+GAV+VSP IPFTA++ F+CTNNM EYEAC G++ AI +K
Sbjct: 160 CFDGASNALGHGVGAVLVSPDDQCIPFTARLGFDCTNNMAEYEACALGVQAAIDFDVK 333
>BQ628592
Length = 423
Score = 103 bits (258), Expect(2) = 5e-23
Identities = 43/61 (70%), Positives = 55/61 (89%)
Frame = -3
Query: 1219 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAVVTGKIARWQVLLSEYD 1278
Y+MLE+TCC L WA+ RLR Y+++HTTWLIS+MDP+KYIFEK +TG+IARWQVLLSE++
Sbjct: 184 YSMLERTCCTLVWASHRLRQYMLSHTTWLISKMDPVKYIFEKPALTGRIARWQVLLSEFN 5
Query: 1279 I 1279
I
Sbjct: 4 I 2
Score = 24.3 bits (51), Expect(2) = 5e-23
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1
Query: 1204 AIYYLSKKLTD 1214
AIYYLSKK TD
Sbjct: 228 AIYYLSKKFTD 196
>BI316922
Length = 405
Score = 100 bits (250), Expect = 5e-21
Identities = 47/135 (34%), Positives = 81/135 (59%)
Frame = +3
Query: 1570 DVHDGTFGTHATGHTMSRKLLRAGYYWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNV 1629
++H G G H+ M+ ++LR GYY TM C ++ +KC +C + + H+ L+
Sbjct: 3 EMHRGICGMHSKSQLMTTRVLRVGYY**TMRKYCTEYVKKCEEC*KFGNISHLLVEELHN 182
Query: 1630 ISSPWPFSMVGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNN 1689
I +PWPF++ G+D++ R P + +++LV ID FTKW+E ++ V KF+ N
Sbjct: 183 IVAPWPFAI*GVDIL-RPFPLSKRQVKYLLVGIDQFTKWIETEHIAIISIANVRKFV*RN 359
Query: 1690 IICRYGVPSKIITDN 1704
I+C +G+P+ +I+DN
Sbjct: 360 IVC*FGIPNTLISDN 404
>CF922341
Length = 675
Score = 94.7 bits (234), Expect = 3e-19
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 4/126 (3%)
Frame = +1
Query: 132 TKTMEEMMEELAK--ELRHEIKANRGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNG 187
T +M E+ K L ++A G D ++L LV + P KFK+ DFD+Y G
Sbjct: 268 TSKNPHVMAEMGKLDHLEEGLRAIEGGEDYAFANLEELFLVPNIITPPKFKVLDFDKYKG 447
Query: 188 LTCPQNHIIKYVRKMGNYKDNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFK 247
TCP+NH+ Y +KMG Y ++ L+IH FQ+SL A WYT+L + +H++ +L AF
Sbjct: 448 TTCPKNHLKMYCQKMGAYAKDEELLIHSFQESLTGVAVTWYTNLEPSRVHSWKDLMVAFV 627
Query: 248 SHYGFN 253
Y +N
Sbjct: 628 RQYQYN 645
>NP595172 polyprotein [Glycine max]
Length = 4659
Score = 92.4 bits (228), Expect = 2e-18
Identities = 127/502 (25%), Positives = 210/502 (41%), Gaps = 11/502 (2%)
Frame = +1
Query: 1300 PLDDYQPIESDFPNEE----IVYLKSKDCEEPLIGEGPDPNSKWGLVFDGAANAYGKGIG 1355
PL D +S N E V LK E P++ PD + + L D A G G+G
Sbjct: 2548 PLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSL-PDFSQPFILETD----ASGIGVG 2712
Query: 1356 AVIVSPQGHHIPFTAQILFECTNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQIK 1415
AV+ GH I + ++ L Y + I EA+ + +H + + +Q
Sbjct: 2713 AVL-GQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALS-KFRHYLLGNKFIIRTDQRS 2886
Query: 1416 GEWETHHAKLIPYRD-YARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVP 1474
+ + P + + + L Y K+E + P +NQ ADAL S MF + W++
Sbjct: 2887 LKSLMDQSLQTPEQQAWLHKFLGYDFKIE--YKPGKDNQAADAL---SRMFMLA-WSE-- 3042
Query: 1475 IIKVQRLERPSHVFTIGDVIDQAGENMVDNKPWYYDIKQCLLSREYPPGASNKDKKTLRR 1534
P +F +++ ++ + +KQ L Y GA
Sbjct: 3043 ---------PHSIF-----LEELRARLISDP----HLKQ--LMETYKQGAD--------- 3135
Query: 1535 LASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGY 1594
AS + + +LY + D V++ +E +++ + H G HA G T + L+A +
Sbjct: 3136 -ASHYTVREGLLYWK--DRVVIPA-EEEIVNKILQEYHSSPIGGHA-GITRTLARLKAQF 3300
Query: 1595 YWLTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWP-FSMVGIDMIGRIEPKASN 1653
YW M+ D + +KC CQ +P L + P + V +D I + S
Sbjct: 3301 YWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGLPN--SF 3474
Query: 1654 GHRFILVAIDYFTKWVEAASY-TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNV 1712
G I+V ID TK+ + +VVA+ ++I+ +G+P I++D +
Sbjct: 3475 GLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTF 3654
Query: 1713 VQALCEEFKIEHHN---SSPYRPQINGVVEAANKNIKRIVQKMVTTY-RDWHEMLPYALH 1768
Q L FK++ SS Y PQ +G E NK ++ ++ + + W + LP+A
Sbjct: 3655 WQHL---FKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWVKALPWAEF 3825
Query: 1769 GYRTTVRSSTGATPFSLVYGME 1790
Y T S G TPF +YG E
Sbjct: 3826 WYNTAYHMSLGMTPFRALYGRE 3891
>BE804087
Length = 160
Score = 81.6 bits (200), Expect = 3e-15
Identities = 37/53 (69%), Positives = 44/53 (82%)
Frame = +2
Query: 1739 EAANKNIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEA 1791
EAANKNIK+ + KM +Y+DWHEM +ALH YRT VR+STGATP+SLVYG EA
Sbjct: 2 EAANKNIKKNI*KMTVSYKDWHEMFSFALHMYRTLVRTSTGATPYSLVYGKEA 160
>BI321666
Length = 430
Score = 77.4 bits (189), Expect = 6e-14
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Frame = +2
Query: 1585 MSRKLLRAGYYWLTMEHDCYQHARKCHKCQ---IYADKIHVPPHALNVISSPWPFSMVGI 1641
+S +L++ +Y ++ D Y HA+ C+KCQ + + +P H + + F GI
Sbjct: 2 ISTNVLQSRFYLPSIFKDAYVHAQSCNKCQRTRSVSKRNELPLHTILEVEI---FDYWGI 172
Query: 1642 DMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKII 1701
D +G P SN +ILV +DY +KWVEA + ++V KF+K I R GVP +I
Sbjct: 173 DFVGPFPPSFSN--EYILVVVDYVSKWVEAVACQKSDAKIVIKFLKKQIFSRLGVPWVLI 346
Query: 1702 TDNGTNLNN 1710
+ G++L N
Sbjct: 347 DNGGSHLCN 373
>BE660092 weakly similar to GP|9884624|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (13%)
Length = 378
Score = 76.6 bits (187), Expect = 1e-13
Identities = 41/122 (33%), Positives = 70/122 (56%), Gaps = 1/122 (0%)
Frame = -3
Query: 1713 VQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYR 1771
+ AL +++ + H S+PY PQ NG E +N+ IKRI++K+V R DW L AL +R
Sbjct: 376 MHALLKKYGVVHRVSTPYHPQTNGQAEISNREIKRILEKIVQPSRKDWSTRLDDALWAHR 197
Query: 1772 TTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRM 1831
T ++ G +P+ +V+G LP+E+E + + S + + R QL+ ++E R+
Sbjct: 196 TAYKAPIGMSPYRVVFGKACHLPVEIEHKAYWAVKTCNFSMDQAGEERKLQLSELDEIRL 17
Query: 1832 DA 1833
+A
Sbjct: 16 EA 11
>BU084093
Length = 421
Score = 68.2 bits (165), Expect = 3e-11
Identities = 43/133 (32%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Frame = -1
Query: 359 HHKKKETEVGMVSAGAGQSMATVAPINATQMPPSYPYQKQQLPVQQQQQNQQARP--TFP 416
HH G S+ A A Q+P P + + +N RP F
Sbjct: 394 HHPSFSAHTGNASSSTPVQPKAPAQREAPQVPT--PNTTRPVGNSNTTRNFPPRPFQEFT 221
Query: 417 PIPMLYAELLPTLLHRGHCTTRQGKPPPDPLPPRFRSDLKCDFHQGALGHDVEGCYALKY 476
P+PM Y +LLP+L+ G+ P P + + C +H G GH VE C ALKY
Sbjct: 220 PLPMTYEDLLPSLIANHLAVVTPGRVLQPPFPKWYDPNATCKYHGGVPGHSVEKCLALKY 41
Query: 477 IVKKLIDQGKLTF 489
V+ L+D G LTF
Sbjct: 40 KVQHLMDAGWLTF 2
>BE801213 weakly similar to GP|6691193|gb| F7F22.17 {Arabidopsis thaliana},
partial (3%)
Length = 416
Score = 46.6 bits (109), Expect(2) = 5e-09
Identities = 19/63 (30%), Positives = 36/63 (56%)
Frame = +3
Query: 1680 QVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVE 1739
++V KF+K NI R+G+P +I+D G++ + + + + + H + Y PQ NG +
Sbjct: 12 KIVIKFLKKNIFSRFGMPRILISDGGSHFYYSQLNKVLKHDSVRHKVETSYHPQTNGQAK 191
Query: 1740 AAN 1742
+N
Sbjct: 192 VSN 200
Score = 34.3 bits (77), Expect(2) = 5e-09
Identities = 15/49 (30%), Positives = 27/49 (54%)
Frame = +2
Query: 1750 QKMVTTYRDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 1798
+ + ++ +DW L AL +T ++ G TPF +VY LP+E++
Sbjct: 227 KNVASSRKDWSSKLEDALWACKTAKKTPIGLTPFQMVYRKACHLPVELK 373
>TC219643 weakly similar to UP|Q6WAY7 (Q6WAY7) Gag/pol polyprotein
(Fragment), partial (8%)
Length = 1320
Score = 58.2 bits (139), Expect = 3e-08
Identities = 46/125 (36%), Positives = 54/125 (42%), Gaps = 15/125 (12%)
Frame = +1
Query: 884 P*IHDAGAVTSTLHQKLKFAKSGKLVTIHGEEAYLVSQLSSFSCIEAGSAE-GTAFQGLT 942
P IH G V STLHQKLKF G LV + GEE LVS SS +EA TAFQ
Sbjct: 1 PWIHSVGVVPSTLHQKLKFVVEGHLVIVSGEEDILVSCPSSMPYVEAAEESLETAFQSFE 180
Query: 943 IEGTEPKRDGTAMASLKD-----AQRAVQEGQAAG*G---------RLIQLRENKHKEGL 988
+ L D A+ + G G G LI + N+ K GL
Sbjct: 181 VVSISSVDSLFGQPCLSDAAVMMARVMLGNGYEPGMGLGKDNGGITSLINTQGNRGKYGL 360
Query: 989 GFSPT 993
G+ PT
Sbjct: 361 GYKPT 375
Score = 39.7 bits (91), Expect = 0.013
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 1156 NFEFPVYEAEDEEGDDI--PYEITRLLEQEGRAIQPHQEEIEIINLG 1200
+FE + + EDE +D+ P E+ R++ E + + PHQEE E+++LG
Sbjct: 864 DFEQKMNQTEDEGNEDVGLPPELERMVAHEDQEMGPHQEETELVDLG 1004
>TC234722 similar to UP|Q6WAY9 (Q6WAY9) Pol (Fragment), partial (32%)
Length = 482
Score = 57.0 bits (136), Expect = 8e-08
Identities = 29/70 (41%), Positives = 40/70 (56%), Gaps = 1/70 (1%)
Frame = -3
Query: 1730 YRPQINGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYRTTVRSSTGATPFSLVYG 1788
Y PQ NG E +NK IKR+++ +V + R DW L A YR ++ G +PF LVYG
Sbjct: 234 YHPQTNGQAEVSNKEIKRVLENIVVSSRKDWALKLDDAFWAYRIAFKTPIGLSPFQLVYG 55
Query: 1789 MEAVLPLEVE 1798
L +E+E
Sbjct: 54 KACHLSVELE 25
>TC220664 weakly similar to UP|Q84TE0 (Q84TE0) At5g51080, partial (31%)
Length = 724
Score = 55.8 bits (133), Expect = 2e-07
Identities = 30/86 (34%), Positives = 45/86 (51%)
Frame = +1
Query: 1377 TNNMVEYEACIFGIEEAIGMRIKHLDIYGDSALIINQIKGEWETHHAKLIPYRDYARRLL 1436
TNN EY A I G++ A+ + I GDS L+ QI G W+ + L + A+ L
Sbjct: 64 TNNAAEYRAMILGMKYALKKGFTGIRIQGDSKLVCMQIDGSWKVKNENLSTLYNVAKELK 243
Query: 1437 TYFTKVELHHIPRDENQMADALATLS 1462
F+ ++ H+ R+ N ADA A L+
Sbjct: 244 DKFSSFQISHVLRNFNSDADAQANLA 321
>TC211815
Length = 704
Score = 44.7 bits (104), Expect(2) = 2e-07
Identities = 39/146 (26%), Positives = 69/146 (46%)
Frame = +2
Query: 1775 RSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLVEEKRMDAM 1834
+S+T TPF L+YG+ +LP+EV L A++ E Q L+L+++ R D +
Sbjct: 230 QSTTHETPF*LIYGISVMLPIEVGEVFL*RHYFAEV*NKEALQI---DLDLIKQVREDTV 400
Query: 1835 ARGQSYQARMKTAFDKKVHPREFKEGELVLKRRISQQPDPRGKWTPNYEGSYVVKKAFSG 1894
+++ RM F+ K+ G + + S + R K+T N EG + ++
Sbjct: 401 IMT*AFKQRMTRCFNSKLPSTV*GRGPSMEGIQRSLEVLVRSKFTTN*EGPFKIRHNSKN 580
Query: 1895 GALILTHMDGVELPNPVNADLVKKYF 1920
GA L + G + N+ +K Y+
Sbjct: 581 GAYKLEELSGKVVLRIWNSMHLKVYY 658
Score = 30.4 bits (67), Expect(2) = 2e-07
Identities = 17/51 (33%), Positives = 24/51 (46%)
Frame = +3
Query: 1703 DNGTNLNNNVVQALCEEFKIEHHNSSPYRPQINGVVEAANKNIKRIVQKMV 1753
DNG N + I+H +S PQ N EAANK I ++K++
Sbjct: 3 DNGLQFTNRKLNEFPSGLNIKHRVTSVKHPQTNRRAEAANKVILGDLKKLL 155
>AW706233
Length = 376
Score = 54.7 bits (130), Expect = 4e-07
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = -3
Query: 141 ELAKELRHEIKANRGNADSF--KTQDLCLVSKVDVPKKFKIPDFDRYNGLTCPQNHIIKY 198
E L+ KA G D ++L LV + P KFK+ +FD+Y G TCP+NH+ Y
Sbjct: 347 EKLDHLKERFKAIEGGQDYAFANLEELFLVXNIISPPKFKVLNFDKYKGTTCPKNHLKMY 168
Query: 199 VRKMGNYKDND 209
+KMG Y ++
Sbjct: 167 CQKMGAYAKDE 135
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,039,179
Number of Sequences: 63676
Number of extensions: 1207232
Number of successful extensions: 7098
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 6694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7043
length of query: 1920
length of database: 12,639,632
effective HSP length: 111
effective length of query: 1809
effective length of database: 5,571,596
effective search space: 10079017164
effective search space used: 10079017164
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC147714.4