TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147712.16 + phase: 0 
         (236 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209465 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (97%)   385  e-108
TC210582 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (64%)   289  9e-79
AW156172                                                               30  0.73
BM527603 similar to GP|10946337|gb| CONSTANS-like protein {Ipomo...    30  0.96
BU548735                                                               28  2.8
TC221680 similar to GB|AAO64901.1|29029044|BT005966 At4g37460 {A...    28  2.8
TC211924 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor...    28  2.8
TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, ...    28  2.8
BI470830                                                               28  3.6
TC220220 similar to UP|P74283 (P74283) Hydrogenase component, pa...    28  3.6
TC217867 similar to UP|Q9ASX3 (Q9ASX3) AT5g46190/MCL19_25 (Fragm...    28  4.7
TC229979 similar to UP|Q9FIN8 (Q9FIN8) Arabidopsis thaliana geno...    28  4.7
TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragmen...    27  8.1
TC210626 weakly similar to UP|Q7AKE8 (Q7AKE8) Thioesterase II, p...    27  8.1
BU549122                                                               27  8.1

>TC209465 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (97%)
          Length = 1000

 Score =  385 bits (989), Expect = e-108
 Identities = 191/225 (84%), Positives = 207/225 (91%)
 Frame = +1

Query: 12  FSCSLNSCTMASSSMEVDNVLSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTP 71
           F+C + S    +SSMEV+ V SE K+LPPKPKFEPLKPHEM    VQFRKV+VPPHRYTP
Sbjct: 100 FTCRMES-NQEASSMEVETVPSEAKLLPPKPKFEPLKPHEMSDGQVQFRKVNVPPHRYTP 276

Query: 72  LKKVWMDIYTPVFEQMKIDIRMNLKGRKVELKTRHDTPDISNLQKCADFVHAFMLGFDVI 131
           LKK WMDIY+P++EQMKID+RMNLK R+VELKTR DTPDISNLQKCADFVHAFMLGFDVI
Sbjct: 277 LKKAWMDIYSPIYEQMKIDVRMNLKARRVELKTRPDTPDISNLQKCADFVHAFMLGFDVI 456

Query: 132 DAIAILRLDELYVESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFTIENASKTRIVIADT 191
           DAIA+LRLDELY+ESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKF IENASKTRIVIADT
Sbjct: 457 DAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADT 636

Query: 192 KIHILGSFANIKIARDSLCYLIMGSPAGKVYSKLRAVTSRMAERF 236
           KIHILGSFANIKIARDSLC LI+GSPAGKVYSKLRAVT+R+AERF
Sbjct: 637 KIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 771


>TC210582 similar to UP|Q9LTU6 (Q9LTU6) Gb|AAF50915.1, partial (64%)
          Length = 798

 Score =  289 bits (739), Expect = 9e-79
 Identities = 155/224 (69%), Positives = 167/224 (74%)
 Frame = +2

Query: 13  SCSLNSCTMASSSMEVDNVLSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPL 72
           +C       A+SSMEV+ V SE K+LPPKPKFEPLKPHEM                    
Sbjct: 65  TCCRMESNQAASSMEVETVPSEAKLLPPKPKFEPLKPHEMSDG----------------- 193

Query: 73  KKVWMDIYTPVFEQMKIDIRMNLKGRKVELKTRHDTPDISNLQKCADFVHAFMLGFDVID 132
                                  + R+VELKTR DTPDISNLQKCADFVHAFMLGFDVID
Sbjct: 194 -----------------------QARRVELKTRPDTPDISNLQKCADFVHAFMLGFDVID 304

Query: 133 AIAILRLDELYVESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFTIENASKTRIVIADTK 192
           AIA+LRLDELY+ESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKF IENASKTRIVIADTK
Sbjct: 305 AIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADTK 484

Query: 193 IHILGSFANIKIARDSLCYLIMGSPAGKVYSKLRAVTSRMAERF 236
           IHILGSFANIKIARDS+C LI+GSPAGKVYSKLRAVT+R+AERF
Sbjct: 485 IHILGSFANIKIARDSICSLILGSPAGKVYSKLRAVTARLAERF 616


>AW156172 
          Length = 306

 Score = 30.4 bits (67), Expect = 0.73
 Identities = 16/46 (34%), Positives = 23/46 (49%)
 Frame = -3

Query: 38  LPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKKVWMDIYTPV 83
           LPP   F P K + + G  V F     PP     LKKV ++ ++P+
Sbjct: 142 LPPPQGFFPPKKNFLGGGGVGFSPWGPPPFFLKKLKKVGINFFSPL 5


>BM527603 similar to GP|10946337|gb| CONSTANS-like protein {Ipomoea nil},
           partial (9%)
          Length = 427

 Score = 30.0 bits (66), Expect = 0.96
 Identities = 21/48 (43%), Positives = 23/48 (47%)
 Frame = +1

Query: 28  VDNVLSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKKV 75
           V N L E  VLPP PKF PL P       V   K  +PP    PL K+
Sbjct: 292 VTNGLLELSVLPPLPKFPPLHP-------VPIYKKPLPP--LPPLPKL 408


>BU548735 
          Length = 659

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 4   LLCFFNQLFSCSLNSCTMASSSMEVDNVLSEQKVLPPKPK 43
           L  FFN+ +SCS  +C++ SS      VL   + +  K K
Sbjct: 375 LKTFFNKDYSCSKEACSVESSKRSATEVLGTTEDISIKEK 256


>TC221680 similar to GB|AAO64901.1|29029044|BT005966 At4g37460 {Arabidopsis
           thaliana;} , partial (36%)
          Length = 1001

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = -3

Query: 75  VWMDIYTPVFEQMKIDIRMNLKGRKVELK 103
           +WM    PVF +  I+I +N+K  K+ +K
Sbjct: 759 LWMQFLAPVFLKKSINIPVNIKPAKITIK 673


>TC211924 similar to UP|Q9V3T8 (Q9V3T8) SR family splicing factor SC35
           (CG5442-PB) (LD32469p), partial (9%)
          Length = 510

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 16/62 (25%), Positives = 29/62 (45%)
 Frame = +1

Query: 5   LCFFNQLFSCSLNSCTMASSSMEVDNVLSEQKVLPPKPKFEPLKPHEMPGAAVQFRKVSV 64
           L   N++FS   NS + ASSS+ + ++ ++    PP        P   P   ++    ++
Sbjct: 196 LLSLNRIFSPPTNSSSTASSSLSISSLTNQTLPKPPTL*LRSKNPTRNPNPNIRRA*PNL 375

Query: 65  PP 66
           PP
Sbjct: 376 PP 381


>TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, partial
           (33%)
          Length = 490

 Score = 28.5 bits (62), Expect = 2.8
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 172 GKTKFT-IENASKTRIVIADTKIHILGSFANIKIARDSLCYLIMGSPAGKVYSKLRAVTS 230
           GKT+   IENA+  ++  +  +  +L     + +  D+   LI+ SP GK+Y    +   
Sbjct: 248 GKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQ 427

Query: 231 RMAERF 236
              ER+
Sbjct: 428 DTIERY 445


>BI470830 
          Length = 428

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 1   MLHLLCFFNQLFSCSLNSCTMASSSMEVDNVLS 33
           +LH+LCF N   SC+ NS       + + N +S
Sbjct: 307 ILHVLCFVNSNLSCAKNSSFNRGLILAISNSIS 209


>TC220220 similar to UP|P74283 (P74283) Hydrogenase component, partial (19%)
          Length = 751

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 40  PKPKFEPLKPHEMPGAAVQFRKVSVPPHRYTPLKK 74
           P P    ++P   PG     R  S PPHR   L+K
Sbjct: 152 PSPPTPGIRPSIFPGGGSPTRSFSPPPHRRNLLQK 256


>TC217867 similar to UP|Q9ASX3 (Q9ASX3) AT5g46190/MCL19_25 (Fragment),
           partial (35%)
          Length = 1429

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 14/32 (43%), Positives = 19/32 (58%)
 Frame = +3

Query: 161 SRAIGRLSGKGGKTKFTIENASKTRIVIADTK 192
           S  IGR+ GKGG T  ++  AS   I + D+K
Sbjct: 18  SDKIGRVIGKGGSTIKSMRQASGAHIEVDDSK 113


>TC229979 similar to UP|Q9FIN8 (Q9FIN8) Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K16H17 (At5g24340), partial
           (18%)
          Length = 535

 Score = 27.7 bits (60), Expect = 4.7
 Identities = 13/23 (56%), Positives = 15/23 (64%), Gaps = 2/23 (8%)
 Frame = -1

Query: 2   LHLLCFFNQLFSCS--LNSCTMA 22
           L  LC FN LFSC   LN C++A
Sbjct: 151 LKALCSFNSLFSCQWLLNKCSIA 83


>TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragment), partial
           (64%)
          Length = 710

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 178 IENASKTRIVIADTKIHILGSFANIKIARDSLCYLIMGSPAGKVYSKLRAVTSRMAERF 236
           IENA+  ++  +  +  +L     + +  D+   LI+ SP GK+Y    +      ER+
Sbjct: 370 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQDTIERY 546


>TC210626 weakly similar to UP|Q7AKE8 (Q7AKE8) Thioesterase II, partial (7%)
          Length = 773

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   MLHLLCFFNQLFSCSLNSCTMASSSM 26
           +LHL CF + L+ CS  +C   S SM
Sbjct: 589 LLHLFCFNSLLWICSKYNCLHRSLSM 666


>BU549122 
          Length = 670

 Score = 26.9 bits (58), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (58%)
 Frame = +1

Query: 39  PPKPKFEPLKPHEMPGAAVQFRKVSVP 65
           PP PK  P  PH  P + ++F  ++VP
Sbjct: 478 PPLPKIHP--PHSPPHSQIRFASLAVP 552


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,144,875
Number of Sequences: 63676
Number of extensions: 138819
Number of successful extensions: 877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of query: 236
length of database: 12,639,632
effective HSP length: 94
effective length of query: 142
effective length of database: 6,654,088
effective search space: 944880496
effective search space used: 944880496
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)