BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147538.7 - phase: 0 /pseudo
(113 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI973702 similar to GP|21703149|gb AT3g23670/MDB19_16 {Arabidops... 34 0.009
BI786996 weakly similar to GP|21703149|gb AT3g23670/MDB19_16 {Ar... 27 0.094
TC207527 weakly similar to UP|O08661 (O08661) Ryanodine receptor... 28 0.64
TC213444 27 1.1
TC215290 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein,... 27 1.1
TC220269 weakly similar to UP|Q6ZCF6 (Q6ZCF6) SET-domain transcr... 27 1.4
TC210088 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (4%) 27 1.4
TC215046 similar to UP|Q94KS0 (Q94KS0) Histidine-containing phos... 27 1.9
BG649872 27 1.9
CO985236 27 1.9
TC217075 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein ... 26 2.4
TC207528 similar to UP|Q76LJ5 (Q76LJ5) Serine threonine Kinase, ... 26 2.4
BE330538 similar to SP|Q9SGG3|ALA Potential phospholipid-transpo... 26 3.2
TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%) 26 3.2
TC209713 26 3.2
TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%) 26 3.2
TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, pa... 25 4.2
TC220043 weakly similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7,... 25 4.2
BI975034 25 4.2
TC218916 25 4.2
>BI973702 similar to GP|21703149|gb AT3g23670/MDB19_16 {Arabidopsis
thaliana}, partial (4%)
Length = 421
Score = 34.3 bits (77), Expect = 0.009
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 96 EQELNGLRQKAGGFLFLK 113
++ELNG RQKAGGFLFLK
Sbjct: 319 KKELNGQRQKAGGFLFLK 372
>BI786996 weakly similar to GP|21703149|gb AT3g23670/MDB19_16 {Arabidopsis
thaliana}, partial (2%)
Length = 421
Score = 26.9 bits (58), Expect(2) = 0.094
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = +2
Query: 97 QELNGLRQKAGGFLFLK 113
+++NG RQKAGGFL LK
Sbjct: 359 KKVNGPRQKAGGFL*LK 409
Score = 22.7 bits (47), Expect(2) = 0.094
Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Frame = +1
Query: 69 DLAQLTEKKN-NPCGFQASIKDSFEVKLEQE 98
DL + + K N NP S +DS +VKLEQE
Sbjct: 280 DLTEASTKANANP----ESTEDSAKVKLEQE 360
>TC207527 weakly similar to UP|O08661 (O08661) Ryanodine receptor type II
(Fragment), partial (4%)
Length = 981
Score = 28.1 bits (61), Expect = 0.64
Identities = 20/69 (28%), Positives = 37/69 (52%), Gaps = 3/69 (4%)
Frame = +1
Query: 34 EDGDEEMEIDEEDVEDHVQVNFVSGNHNKM--NIADQDLAQLTEKKNNPCGFQASIKDS- 90
EDG +E E EED E++ ++ S H N A+Q++ T+ +N + + + S
Sbjct: 670 EDGSDEEEDPEEDPEEYEEMENGSPQHEASHDNNAEQEVKADTKSENITTNNKTTDETSK 849
Query: 91 FEVKLEQEL 99
E+K++ E+
Sbjct: 850 EEIKVKDEV 876
>TC213444
Length = 530
Score = 27.3 bits (59), Expect = 1.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 29 LCCVDEDGDEEMEIDEEDVEDHVQVNFVSGN 59
LCCV+E+G E E+DE + N S +
Sbjct: 116 LCCVNEEGVEMEEVDESLSLSQITTNSASNS 24
>TC215290 weakly similar to UP|Q9SJB0 (Q9SJB0) Expressed protein, partial
(36%)
Length = 820
Score = 27.3 bits (59), Expect = 1.1
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +3
Query: 8 SAAWVRKSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVEDHVQVNFVSGNHNKMNIAD 67
++ W R+S + +S + L VDED D + E +EED E++ + + + + ++A+
Sbjct: 603 ASKWSRRS-SFYSWSNPQSMPLLPVDEDQDYDYEEEEEDEEENARKVPSASSSSSSSLAE 779
Query: 68 Q 68
+
Sbjct: 780 E 782
>TC220269 weakly similar to UP|Q6ZCF6 (Q6ZCF6) SET-domain transcriptional
regulator-like protein, partial (21%)
Length = 1178
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +2
Query: 44 EEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNP 80
E+ +E VQVNF+ +N NI+ D + + +P
Sbjct: 71 EQPLEHQVQVNFLVAAYNLANISPSDFQIMLSLQGSP 181
>TC210088 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (4%)
Length = 683
Score = 26.9 bits (58), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 33 DEDGDEEMEIDEEDVEDHVQVNF 55
DED D E ID E E+ + VNF
Sbjct: 76 DEDLDVEENIDAESEEEEIMVNF 144
>TC215046 similar to UP|Q94KS0 (Q94KS0) Histidine-containing phosphotransfer
protein, partial (87%)
Length = 1079
Score = 26.6 bits (57), Expect = 1.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 25 RPSSLCCVDEDGDEEMEIDEEDVE--DHVQVNFVSG 58
+ S LCCV E + ME+D+ E D+ + F+ G
Sbjct: 90 KSSGLCCVTEGQRQNMEVDQMQRECLDYTKSLFLEG 197
>BG649872
Length = 326
Score = 26.6 bits (57), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 33 DEDGDEEMEIDEEDVEDHVQVN 54
D+ GDE EI+E+ +DH+ N
Sbjct: 266 DKKGDELKEIEEDKKDDHISEN 201
>CO985236
Length = 466
Score = 26.6 bits (57), Expect = 1.9
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -1
Query: 33 DEDGDEEMEIDEEDVEDHVQVN 54
D+ GDE EI+E+ +DH+ N
Sbjct: 262 DKKGDELKEIEEDKKDDHISEN 197
>TC217075 similar to UP|Q9SPL2 (Q9SPL2) COP1-interacting protein CIP8
(At5g64920), partial (34%)
Length = 1267
Score = 26.2 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 35 DGDEEMEIDE----EDVEDHVQVNFVSGNHNKMNIADQDL 70
D DEE E D+ E+ E+H + SGN + D+DL
Sbjct: 359 DNDEENENDDDNGDEEFEEHEEAEDRSGNEDPHGGDDEDL 478
>TC207528 similar to UP|Q76LJ5 (Q76LJ5) Serine threonine Kinase, partial
(4%)
Length = 757
Score = 26.2 bits (56), Expect = 2.4
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Frame = +3
Query: 34 EDG-DEEMEIDEEDVEDHVQVNFVSGNHNKMN--IADQDLAQLTEKKNNPCGFQASIKDS 90
EDG DEE E EED E++ ++ S H N A+Q+ T+ +N + + + S
Sbjct: 30 EDGSDEEEEDPEEDPEEYEEMENGSPQHEASNDKNAEQEAKADTKSENITTNNKTTDETS 209
Query: 91 -FEVKLEQEL 99
E+K++ E+
Sbjct: 210KEEIKVKDEV 239
>BE330538 similar to SP|Q9SGG3|ALA Potential phospholipid-transporting ATPase
5 (EC 3.6.3.1) (Aminophospholipid flippase 5)., partial
(12%)
Length = 472
Score = 25.8 bits (55), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = -2
Query: 30 CCVDEDGDEEMEIDEEDVE 48
C V EDGD+E E DE +E
Sbjct: 195 CLVIEDGDDEEEDDEGGIE 139
>TC215450 similar to UP|P93488 (P93488) NAP1Ps, partial (30%)
Length = 672
Score = 25.8 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 32 VDEDGDEEMEIDEEDVED 49
++ED DEE E DE+D +D
Sbjct: 234 IEEDDDEEEEEDEDDDDD 287
>TC209713
Length = 957
Score = 25.8 bits (55), Expect = 3.2
Identities = 13/49 (26%), Positives = 25/49 (50%)
Frame = +1
Query: 42 IDEEDVEDHVQVNFVSGNHNKMNIADQDLAQLTEKKNNPCGFQASIKDS 90
I+ + D + + VSG+HN+ N +L + K+ + SIK++
Sbjct: 283 IESNQINDSKKKSNVSGHHNQQNQGGNELMNVVRKRTE----KLSIKEN 417
>TC215449 similar to UP|P93488 (P93488) NAP1Ps, partial (97%)
Length = 1495
Score = 25.8 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 32 VDEDGDEEMEIDEEDVED 49
++ED DEE E DE+D +D
Sbjct: 1067 IEEDDDEEEEEDEDDDDD 1120
>TC216648 weakly similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (41%)
Length = 2064
Score = 25.4 bits (54), Expect = 4.2
Identities = 9/21 (42%), Positives = 16/21 (75%)
Frame = +1
Query: 32 VDEDGDEEMEIDEEDVEDHVQ 52
+DEDG+E+ E +E++ ED +
Sbjct: 322 IDEDGEEKDEQEEKEEEDEAE 384
>TC220043 weakly similar to UP|Q940C3 (Q940C3) AT3g27530/MMJ24_7, partial
(46%)
Length = 1029
Score = 25.4 bits (54), Expect = 4.2
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = +1
Query: 64 NIADQDLAQLTEKKNNPCGFQASIKDSFEVKLEQEL 99
+IAD D L+E+KN +SI DS+ V L + L
Sbjct: 64 DIADSDNNDLSEQKNMDHPILSSILDSYFVNLVKGL 171
>BI975034
Length = 437
Score = 25.4 bits (54), Expect = 4.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 33 DEDGDEEMEIDEED 46
DE G+E ME+DEED
Sbjct: 221 DEMGEEVMEVDEED 180
>TC218916
Length = 1349
Score = 25.4 bits (54), Expect = 4.2
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +1
Query: 10 AWVRKSLNILQFSLNRPSSLCCVDEDGDEEMEIDEEDVEDHVQVNFVSGNH 60
AW R + F + RP L D D + ID+E ++ ++N S NH
Sbjct: 658 AW-RTARRTANFRVPRPRVLSSNGADSDADFCIDQERNIEYKKLNGGSSNH 807
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,654,084
Number of Sequences: 63676
Number of extensions: 48391
Number of successful extensions: 328
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of query: 113
length of database: 12,639,632
effective HSP length: 89
effective length of query: 24
effective length of database: 6,972,468
effective search space: 167339232
effective search space used: 167339232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC147538.7