BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147538.1 + phase: 0
(138 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228460 homologue to UP|Q70XF0 (Q70XF0) NADH dehydrogenase subu... 145 8e-36
TC228459 109 4e-25
TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%) 29 0.63
TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 28 1.4
TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 28 1.4
TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement p... 28 1.4
CO984545 28 1.4
TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-li... 28 1.8
TC208876 UP|Q9ZPK4 (Q9ZPK4) Glutamyl-tRNA reductase, complete 27 2.4
AW509072 27 2.4
TC222707 homologue to UP|Q9AT29 (Q9AT29) BZip transcription fact... 27 2.4
TC203718 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (7%) 26 5.3
TC221524 weakly similar to UP|YIPL_SOLTU (P59234) Yippee-like pr... 26 5.3
TC225710 weakly similar to GB|AAM19894.1|20453311|AY097378 At2g4... 26 5.3
TC230186 26 6.9
TC218173 similar to UP|Q41102 (Q41102) Phaseolin G-box binding p... 26 6.9
TC232742 weakly similar to PIR|G86367|G86367 protein F28C11.3 [i... 26 6.9
TC216527 UP|NO20_SOYBN (P08960) Nodulin 20 precursor (N-20), com... 26 6.9
AW279479 25 9.0
TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding p... 25 9.0
>TC228460 homologue to UP|Q70XF0 (Q70XF0) NADH dehydrogenase subunit 4,
partial (4%)
Length = 766
Score = 145 bits (365), Expect = 8e-36
Identities = 78/136 (57%), Positives = 100/136 (73%), Gaps = 6/136 (4%)
Frame = +2
Query: 1 MSKGGETVKQSEASSPLKQVDSAIEKTKGETADG------DKDEIIKELKKVKKQNFVTH 54
M KG E ++Q EASS + V S ++T+ E D + DEIIKELKK+K+QNFVTH
Sbjct: 278 MLKGEEILEQFEASSSSEPVASITQETESENEDAGESKGSENDEIIKELKKLKRQNFVTH 457
Query: 55 CLLSAMIVLTVAWQLSEVSLVMRVKDGMNHPFRSVGNMFKEMVKDVSGSNGQDAAGDKEN 114
CLLS MIVLTVAWQLSEVSL+++VKDG++HPFRS GNM K MVK V NGQ+A +
Sbjct: 458 CLLSVMIVLTVAWQLSEVSLILKVKDGISHPFRSFGNMLKGMVK-VPNMNGQEADDKEHP 634
Query: 115 NESTSLPSLKIPDMTN 130
+ES S+PS+ IP+M++
Sbjct: 635 SESPSIPSMIIPNMSH 682
>TC228459
Length = 870
Score = 109 bits (273), Expect = 4e-25
Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 6/100 (6%)
Frame = +2
Query: 1 MSKGGETVKQSEASSPLKQVDSAIEKTKGETADGDK------DEIIKELKKVKKQNFVTH 54
M KG E ++Q EASS + V S ++T+ E +G + DEIIKELKKVK+QNFVTH
Sbjct: 107 MLKGEEILEQFEASSSSEPVASLTQETESENENGGEGKGSKNDEIIKELKKVKRQNFVTH 286
Query: 55 CLLSAMIVLTVAWQLSEVSLVMRVKDGMNHPFRSVGNMFK 94
CLLS MIVL VAWQLSEVSL+++VKDG++H FRS M K
Sbjct: 287 CLLSVMIVLNVAWQLSEVSLILKVKDGLSHSFRSKNLMTK 406
>TC207027 weakly similar to UP|Q9LW95 (Q9LW95) KED, partial (17%)
Length = 1005
Score = 29.3 bits (64), Expect = 0.63
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 24 IEKTKGETADGDKDEIIKELKKVKKQN 50
+EK KG+ DG+ DE KE KK +K++
Sbjct: 87 VEKVKGKENDGEDDEEKKEKKKKEKKD 167
>TC226231 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (97%)
Length = 1375
Score = 28.1 bits (61), Expect = 1.4
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +1
Query: 11 SEASSPLKQVDSAIEKTKGETADGDKDEIIKELKKVK 47
+E + +KQ+ A+ G AD D+DE+ EL++++
Sbjct: 547 NEQTENMKQIQEALSTPIGAAADFDEDELEAELEELE 657
>TC226230 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (72%)
Length = 834
Score = 28.1 bits (61), Expect = 1.4
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +2
Query: 11 SEASSPLKQVDSAIEKTKGETADGDKDEIIKELKKVK 47
+E + +KQ+ A+ G AD D+DE+ EL++++
Sbjct: 212 NEQTENMKQIQDALSAPIGAAADFDEDELEAELEELE 322
>TC226228 similar to UP|Q8L9C3 (Q8L9C3) Copia-like retroelement pol
polyprotein, partial (97%)
Length = 1094
Score = 28.1 bits (61), Expect = 1.4
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +2
Query: 11 SEASSPLKQVDSAIEKTKGETADGDKDEIIKELKKVK 47
+E + +KQ+ A+ G AD D+DE+ EL++++
Sbjct: 608 NEQTENMKQIQDALSAPIGAAADFDEDELEAELEELE 718
>CO984545
Length = 798
Score = 28.1 bits (61), Expect = 1.4
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = -2
Query: 101 SGSNGQDAAGDKENNESTSLPS 122
SGS+G +AA ENNE++ +PS
Sbjct: 668 SGSSGDNAAQQVENNENSVIPS 603
>TC229808 similar to UP|Q6K832 (Q6K832) Lipase class 3 protein-like, partial
(3%)
Length = 1019
Score = 27.7 bits (60), Expect = 1.8
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +3
Query: 12 EASSPLKQVDSAIEKTKGETADGDKDEIIKELKKVK 47
E+ S + +S+ E + G+ +DGD+DE+ ++ K+K
Sbjct: 243 ESMSDDDEYNSSSEGSDGDDSDGDEDELSNKVGKLK 350
>TC208876 UP|Q9ZPK4 (Q9ZPK4) Glutamyl-tRNA reductase, complete
Length = 1896
Score = 27.3 bits (59), Expect = 2.4
Identities = 27/120 (22%), Positives = 54/120 (44%), Gaps = 4/120 (3%)
Frame = +1
Query: 17 LKQVDSAIEKTKG-ETADGDKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLV 75
+K+V + KT G AD + + + K + F L ++ VL L++V V
Sbjct: 472 VKEVTEWMSKTSGIPVADLCQHQFLLYNKDATQHLFEVSAGLDSL-VLGEGQILAQVKQV 648
Query: 76 MRVKDGMNHPFRSVGNMFKEMV---KDVSGSNGQDAAGDKENNESTSLPSLKIPDMTNVD 132
++V G+N R++ +FK + K V A ++ + L +K+P+ ++ +
Sbjct: 649 VKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHAN 828
>AW509072
Length = 428
Score = 27.3 bits (59), Expect = 2.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 4 GGETVKQSEASSPLKQVDSAIEKTKGETADGD 35
GG+ + ++ +SP K ++ AI K KGE++ D
Sbjct: 274 GGKGMMGNDENSPWKSIEKAIGKFKGESSIED 369
>TC222707 homologue to UP|Q9AT29 (Q9AT29) BZip transcription factor, complete
Length = 671
Score = 27.3 bits (59), Expect = 2.4
Identities = 12/43 (27%), Positives = 27/43 (61%)
Frame = -2
Query: 39 IIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDG 81
+I +L+ + + + C LS+M++ ++ SEV L++R ++G
Sbjct: 373 LILDLRADSRFDIILRCFLSSMMLNWISSASSEVELLLRHEEG 245
>TC203718 similar to UP|Q8H6S5 (Q8H6S5) CTV.2, partial (7%)
Length = 509
Score = 26.2 bits (56), Expect = 5.3
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +3
Query: 55 CLLSAMIVLTVAWQLSEVSLVMRVKDGMNHPFRSVGN 91
CLL + L WQL ++ L +++KD P ++ N
Sbjct: 183 CLLRLRMGLQAMWQLLQLDLQIKLKDDPCQPKGTLSN 293
>TC221524 weakly similar to UP|YIPL_SOLTU (P59234) Yippee-like protein,
partial (84%)
Length = 655
Score = 26.2 bits (56), Expect = 5.3
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 29 GETADGDKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEV 72
G DGD + ++ KK++ CL ++ T +WQ ++
Sbjct: 426 GPFLDGDMRLFMSRIRSTKKESLSLKCLRCWDLLTTSSWQFKKL 557
>TC225710 weakly similar to GB|AAM19894.1|20453311|AY097378
At2g41800/T11A7.10 {Arabidopsis thaliana;} , partial
(16%)
Length = 646
Score = 26.2 bits (56), Expect = 5.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 52 VTHCLLSAMIVLTVAWQLSEVSLVMRVKDGMNHPFRSVG 90
+ +C +S +++V W S + KD PF+S G
Sbjct: 412 IVYCQVSV*DIISVQWMESMMDEAFAAKDTFKAPFKSEG 528
>TC230186
Length = 422
Score = 25.8 bits (55), Expect = 6.9
Identities = 20/70 (28%), Positives = 35/70 (49%)
Frame = +2
Query: 1 MSKGGETVKQSEASSPLKQVDSAIEKTKGETADGDKDEIIKELKKVKKQNFVTHCLLSAM 60
+SK G++ + + S+ +V S I++ A GD E ++++ + Q F T C L +
Sbjct: 26 ISKVGKSASELQLSA--LEVGSGIKEGAKRVA-GDCREGVEKITQKFTQKFKT*CFLPSN 196
Query: 61 IVLTVAWQLS 70
I W LS
Sbjct: 197IFFQAYWLLS 226
>TC218173 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (28%)
Length = 867
Score = 25.8 bits (55), Expect = 6.9
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +3
Query: 26 KTKGETADGDKDEIIKELKKVKKQ 49
K+K +T + DKD + K+L+ VKK+
Sbjct: 168 KSKLQTLESDKDVLHKQLEGVKKE 239
>TC232742 weakly similar to PIR|G86367|G86367 protein F28C11.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(19%)
Length = 838
Score = 25.8 bits (55), Expect = 6.9
Identities = 34/111 (30%), Positives = 48/111 (42%), Gaps = 15/111 (13%)
Frame = +2
Query: 8 VKQSEASSPLK-----QVDSAIEKTKGETADGDK-DEIIKELKKVKKQNFVTHCLLSAM- 60
+K S ASS L ++ EK G T D + K ++ V HC+ +
Sbjct: 158 LKGSTASSWLSVAIAGEIMHVTEKHSGVTYSFDTVSKTWKGPFNLRPHESVFHCVTGTLG 337
Query: 61 ---IVLTVAWQLSEVSLV----MRVKDGMNHPFRSVGNMFKEMVKDV-SGS 103
+V V W++ V V +RV GM VG M KEMV+ + SGS
Sbjct: 338 ERLMVAGVVWEVGNVKGVKLWEVRVGSGMEE----VGEMPKEMVRKLFSGS 478
>TC216527 UP|NO20_SOYBN (P08960) Nodulin 20 precursor (N-20), complete
Length = 592
Score = 25.8 bits (55), Expect = 6.9
Identities = 24/91 (26%), Positives = 40/91 (43%)
Frame = +1
Query: 33 DGDKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDGMNHPFRSVGNM 92
+G + II+ + + Q FVTHC S+ + T + L + MN PF +
Sbjct: 106 EGKANNIIEAYESPRFQKFVTHC--SSHVTQTCS---GNDPLNNQEASRMNSPFGLSFCL 270
Query: 93 FKEMVKDVSGSNGQDAAGDKENNESTSLPSL 123
F M K ++ + ++NN S+ SL
Sbjct: 271 FDSMEKCLA-DHKASLKDPQDNNNLASMSSL 360
>AW279479
Length = 422
Score = 25.4 bits (54), Expect = 9.0
Identities = 11/41 (26%), Positives = 22/41 (52%)
Frame = +3
Query: 91 NMFKEMVKDVSGSNGQDAAGDKENNESTSLPSLKIPDMTNV 131
N +E+ + GS+ D K +E+ S+P+ + +TN+
Sbjct: 90 NKIREICEQSQGSSSDDILMLKSEHENDSIPAEEAHSITNI 212
>TC218174 similar to UP|Q41102 (Q41102) Phaseolin G-box binding protein PG2
(Fragment), partial (49%)
Length = 1345
Score = 25.4 bits (54), Expect = 9.0
Identities = 11/24 (45%), Positives = 18/24 (74%)
Frame = +3
Query: 26 KTKGETADGDKDEIIKELKKVKKQ 49
K+K +T + DKD + K+L+ VKK+
Sbjct: 570 KSKLQTLESDKDGMQKQLEGVKKE 641
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.308 0.127 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,593,502
Number of Sequences: 63676
Number of extensions: 45667
Number of successful extensions: 222
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of query: 138
length of database: 12,639,632
effective HSP length: 87
effective length of query: 51
effective length of database: 7,099,820
effective search space: 362090820
effective search space used: 362090820
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147538.1