
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.14 - phase: 0
(176 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%) 52 1e-07
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat... 37 0.005
TC211858 35 0.024
TC204819 UP|Q43445 (Q43445) S-adenosyl-L-methionine:delta24-ster... 28 1.7
CD401583 28 1.7
TC213088 UP|Q43445 (Q43445) S-adenosyl-L-methionine:delta24-ster... 28 1.7
AW570051 similar to GP|11934675|gb| ent-kaurene oxidase {Cucurbi... 28 1.7
CO983944 28 2.9
TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcripti... 27 3.8
TC217869 27 3.8
TC217868 27 3.8
AW309963 similar to GP|336870|gb|AA alpha-apoprotein {Euglena gr... 27 5.0
TC219278 27 5.0
TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, part... 27 6.5
BE805054 27 6.5
TC207960 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partia... 27 6.5
TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogena... 27 6.5
TC229706 homologue to UP|Q84SA6 (Q84SA6) Serine/threonine protei... 26 8.5
TC210005 similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-like prote... 26 8.5
>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
Length = 746
Score = 52.4 bits (124), Expect = 1e-07
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
Frame = -1
Query: 1 MEAWNSERHAFEIGSGEIGFSLLDVALILGI-----PVVGHR----VELAEEQLFSELEE 51
+E W E H F + GE +L DV ++LG+ P++G +L EE L +E
Sbjct: 467 IERWRPETHTFHLRCGEATITLQDVLILLGLRTDGAPLIGSTNLDWADLCEELLGVRPQE 288
Query: 52 -EYGASRAKRK-VAMTSLEARLDSIGEDVSDDFVRSFLLFTIG--TFLSSIDGKVDSRYL 107
E S K +A +D + F+R+++L IG F++ +V RYL
Sbjct: 287 GEIEGSVVKLSWLAHYFSHINIDEGNVEQLQRFIRAWILRFIGGVIFVNKSSSRVSLRYL 108
Query: 108 SFLGNLDDVSGFAWGAAVIEDLCQWLDKRKDNNVQ 142
FL + + S +AWG A++ L + + D V+
Sbjct: 107 QFLRDFE*CSTYAWGPAMLAYLYREMCSTTDYKVK 3
>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
(japonica cultivar-group)}, partial (5%)
Length = 429
Score = 37.0 bits (84), Expect = 0.005
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -1
Query: 1 MEAWNSERHAFEIGSGEIGFSLLDVALILGIPVVG 35
+E W E H F + GE +L DV+++LGIPV G
Sbjct: 318 IERWRPETHTFHLKYGEATITLQDVSVLLGIPVDG 214
>TC211858
Length = 524
Score = 34.7 bits (78), Expect = 0.024
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Frame = -1
Query: 106 YLSFLGNLDDVSGFAWGAAVIEDLCQWLDKRKDNNVQYVGGCLIFLQVSLICLSYYHYLL 165
YL +L G+AWG A + + LD+ + + G L LQV+ + L+ ++
Sbjct: 458 YLDAFRDLGQSGGYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLLQVNFVFLNMLRSIM 279
Query: 166 L-NC--ILPLSYIC 176
+ C ++ S+ C
Sbjct: 278 I*TCFYVMLTSFFC 237
>TC204819 UP|Q43445 (Q43445)
S-adenosyl-L-methionine:delta24-sterol-C-
methyltransferase , partial (98%)
Length = 1337
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +2
Query: 148 LIFLQVSLICLSYYHYLLL 166
L+ L VSL CL Y H++LL
Sbjct: 1199 LVILAVSLFCLGYQHFILL 1255
>CD401583
Length = 637
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -3
Query: 148 LIFLQVSLICLSYYHYLLL 166
L+ L VSL CL Y H++LL
Sbjct: 113 LVILAVSLFCLGYQHFILL 57
>TC213088 UP|Q43445 (Q43445)
S-adenosyl-L-methionine:delta24-sterol-C-
methyltransferase , partial (5%)
Length = 473
Score = 28.5 bits (62), Expect = 1.7
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = +3
Query: 148 LIFLQVSLICLSYYHYLLL 166
L+ L VSL CL Y H++LL
Sbjct: 345 LVILAVSLFCLGYQHFILL 401
>AW570051 similar to GP|11934675|gb| ent-kaurene oxidase {Cucurbita
maxima}, partial (13%)
Length = 282
Score = 28.5 bits (62), Expect = 1.7
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 6 SERHAFEIGSGEIGFSLLDVALILGIPVVGHRVELAEE---QLFSELEEEYGASRAKRKV 62
+ RHA +G+G SL V + G+PV+G+ ++L E+ + F+ + ++G + R
Sbjct: 33 TRRHA-GVGAGAGAGSLPPVPAVPGLPVIGNLLQLKEKKPYKTFTHMTHKHGPIYSIRTG 209
Query: 63 AMT 65
A T
Sbjct: 210AST 218
>CO983944
Length = 649
Score = 27.7 bits (60), Expect = 2.9
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +3
Query: 148 LIFLQVSLICL--SYYHYLLLNCILP 171
L+FLQ+S++ + S HY LL+C LP
Sbjct: 96 LLFLQLSVLVVADSLSHYFLLDCYLP 173
>TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcription factor
CA150b, partial (20%)
Length = 631
Score = 27.3 bits (59), Expect = 3.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 31 IPVVGHRVELAEEQLFSELEEEYGASRAKRKVAMTSLEARLDSIGEDVS 79
IP R L E + + EEE RA K A+ + LD ED++
Sbjct: 322 IPSYSARRSLFEHYVKTRAEEERKEKRAALKAAIEGFKRLLDEASEDIN 468
>TC217869
Length = 651
Score = 27.3 bits (59), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 64 MTSLEARLDSIGEDVSDDFVR 84
+TSL R+ S GED+ DFVR
Sbjct: 90 ITSLVTRIPSFGEDICVDFVR 28
>TC217868
Length = 764
Score = 27.3 bits (59), Expect = 3.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 64 MTSLEARLDSIGEDVSDDFVR 84
+TSL R+ S GED+ DFVR
Sbjct: 115 ITSLVTRIPSFGEDICVDFVR 53
>AW309963 similar to GP|336870|gb|AA alpha-apoprotein {Euglena gracilis},
partial (3%)
Length = 464
Score = 26.9 bits (58), Expect = 5.0
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = -1
Query: 150 FLQVSLICLSYYHYLLLNCILPLSYI 175
FL LICL+YY+ + +N + L ++
Sbjct: 182 FLWKKLICLAYYYLIEINQVFQLQFL 105
>TC219278
Length = 679
Score = 26.9 bits (58), Expect = 5.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Frame = +2
Query: 140 NVQYVGG--------CLIFLQVSLICLSYYHYLLLNCILPL 172
N++Y+GG C F L+CL Y + LLN + L
Sbjct: 548 NIKYMGGKLCLGNY*CFRFYLTKLLCLPYSLFHLLNTFISL 670
>TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, partial (59%)
Length = 2299
Score = 26.6 bits (57), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 149 IFLQVSLICLSYYHYLLLNCILPL 172
++L LICL+Y+H L ++PL
Sbjct: 762 LYLLYLLICLNYHHLYCLRVLVPL 833
>BE805054
Length = 349
Score = 26.6 bits (57), Expect = 6.5
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 147 CLIFLQVSLICLSYYHYLL 165
C+I +++ LIC S++H LL
Sbjct: 130 CIILMRLQLICTSFFH*LL 74
>TC207960 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial (72%)
Length = 1681
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/37 (32%), Positives = 23/37 (61%)
Frame = +2
Query: 63 AMTSLEARLDSIGEDVSDDFVRSFLLFTIGTFLSSID 99
A ++++ L+S ED+S F+ +F + T+ F S+D
Sbjct: 1130 AHSTVDTNLNSRREDIS*GFLINFTICTVWPFTKSVD 1240
>TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
[ubiquinone] flavoprotein subunit, mitochondrial (FP)
(Flavoprotein subunit of complex II) , partial (17%)
Length = 681
Score = 26.6 bits (57), Expect = 6.5
Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
Frame = +3
Query: 62 VAMTSLEARLDSIGEDVSDDF-VR---SFLLFTIGTFLSSIDGKVDSRYLSFLGNLDDVS 117
+ M S EAR +S G +DF VR S++ T+G F + ++D R + D+V
Sbjct: 213 ITMYSAEARKESRGAHAREDFKVRDDGSWMKHTVG-FWENEKVRLDYRPVHLNVLDDEVE 389
Query: 118 GFAWGAAVIEDLCQWLD 134
F A V C W+D
Sbjct: 390 SFPPKARVY*YTC*WMD 440
>TC229706 homologue to UP|Q84SA6 (Q84SA6) Serine/threonine protein kinase,
partial (50%)
Length = 1162
Score = 26.2 bits (56), Expect = 8.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 160 YYHYLLLNCILPLSYI 175
YY+Y+ LNC++ L Y+
Sbjct: 1042 YYYYVTLNCLMHLPYL 995
>TC210005 similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-like protein, partial
(3%)
Length = 1074
Score = 26.2 bits (56), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 39 ELAEEQLFSELEEEYGASRA 58
ELAE +LFS E+EY ++ A
Sbjct: 418 ELAESELFSSFEQEYDSTLA 359
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,296,816
Number of Sequences: 63676
Number of extensions: 119531
Number of successful extensions: 786
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of query: 176
length of database: 12,639,632
effective HSP length: 91
effective length of query: 85
effective length of database: 6,845,116
effective search space: 581834860
effective search space used: 581834860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Medicago: description of AC147537.14