Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.14 - phase: 0 
         (176 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)         52  1e-07
BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sat...    37  0.005
TC211858                                                               35  0.024
TC204819 UP|Q43445 (Q43445) S-adenosyl-L-methionine:delta24-ster...    28  1.7
CD401583                                                               28  1.7
TC213088 UP|Q43445 (Q43445) S-adenosyl-L-methionine:delta24-ster...    28  1.7
AW570051 similar to GP|11934675|gb| ent-kaurene oxidase {Cucurbi...    28  1.7
CO983944                                                               28  2.9
TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcripti...    27  3.8
TC217869                                                               27  3.8
TC217868                                                               27  3.8
AW309963 similar to GP|336870|gb|AA alpha-apoprotein {Euglena gr...    27  5.0
TC219278                                                               27  5.0
TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, part...    27  6.5
BE805054                                                               27  6.5
TC207960 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partia...    27  6.5
TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogena...    27  6.5
TC229706 homologue to UP|Q84SA6 (Q84SA6) Serine/threonine protei...    26  8.5
TC210005 similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-like prote...    26  8.5

>TC232778 similar to UP|Q9LNG5 (Q9LNG5) F21D18.16, partial (5%)
          Length = 746

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 13/155 (8%)
 Frame = -1

Query: 1   MEAWNSERHAFEIGSGEIGFSLLDVALILGI-----PVVGHR----VELAEEQLFSELEE 51
           +E W  E H F +  GE   +L DV ++LG+     P++G       +L EE L    +E
Sbjct: 467 IERWRPETHTFHLRCGEATITLQDVLILLGLRTDGAPLIGSTNLDWADLCEELLGVRPQE 288

Query: 52  -EYGASRAKRK-VAMTSLEARLDSIGEDVSDDFVRSFLLFTIG--TFLSSIDGKVDSRYL 107
            E   S  K   +A       +D    +    F+R+++L  IG   F++    +V  RYL
Sbjct: 287 GEIEGSVVKLSWLAHYFSHINIDEGNVEQLQRFIRAWILRFIGGVIFVNKSSSRVSLRYL 108

Query: 108 SFLGNLDDVSGFAWGAAVIEDLCQWLDKRKDNNVQ 142
            FL + +  S +AWG A++  L + +    D  V+
Sbjct: 107 QFLRDFE*CSTYAWGPAMLAYLYREMCSTTDYKVK 3


>BI470376 weakly similar to GP|14090338|dbj P0638D12.5 {Oryza sativa
           (japonica cultivar-group)}, partial (5%)
          Length = 429

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 1   MEAWNSERHAFEIGSGEIGFSLLDVALILGIPVVG 35
           +E W  E H F +  GE   +L DV+++LGIPV G
Sbjct: 318 IERWRPETHTFHLKYGEATITLQDVSVLLGIPVDG 214


>TC211858 
          Length = 524

 Score = 34.7 bits (78), Expect = 0.024
 Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
 Frame = -1

Query: 106 YLSFLGNLDDVSGFAWGAAVIEDLCQWLDKRKDNNVQYVGGCLIFLQVSLICLSYYHYLL 165
           YL    +L    G+AWG A +  +   LD+      + + G L  LQV+ + L+    ++
Sbjct: 458 YLDAFRDLGQSGGYAWGVAALVHMYNQLDEASRTTTRQIVGYLTLLQVNFVFLNMLRSIM 279

Query: 166 L-NC--ILPLSYIC 176
           +  C  ++  S+ C
Sbjct: 278 I*TCFYVMLTSFFC 237


>TC204819 UP|Q43445 (Q43445)
            S-adenosyl-L-methionine:delta24-sterol-C-
            methyltransferase , partial (98%)
          Length = 1337

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +2

Query: 148  LIFLQVSLICLSYYHYLLL 166
            L+ L VSL CL Y H++LL
Sbjct: 1199 LVILAVSLFCLGYQHFILL 1255


>CD401583 
          Length = 637

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = -3

Query: 148 LIFLQVSLICLSYYHYLLL 166
           L+ L VSL CL Y H++LL
Sbjct: 113 LVILAVSLFCLGYQHFILL 57


>TC213088 UP|Q43445 (Q43445)
           S-adenosyl-L-methionine:delta24-sterol-C-
           methyltransferase , partial (5%)
          Length = 473

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 148 LIFLQVSLICLSYYHYLLL 166
           L+ L VSL CL Y H++LL
Sbjct: 345 LVILAVSLFCLGYQHFILL 401


>AW570051 similar to GP|11934675|gb| ent-kaurene oxidase {Cucurbita
          maxima}, partial (13%)
          Length = 282

 Score = 28.5 bits (62), Expect = 1.7
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
 Frame = +3

Query: 6  SERHAFEIGSGEIGFSLLDVALILGIPVVGHRVELAEE---QLFSELEEEYGASRAKRKV 62
          + RHA  +G+G    SL  V  + G+PV+G+ ++L E+   + F+ +  ++G   + R  
Sbjct: 33 TRRHA-GVGAGAGAGSLPPVPAVPGLPVIGNLLQLKEKKPYKTFTHMTHKHGPIYSIRTG 209

Query: 63 AMT 65
          A T
Sbjct: 210AST 218


>CO983944 
          Length = 649

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = +3

Query: 148 LIFLQVSLICL--SYYHYLLLNCILP 171
           L+FLQ+S++ +  S  HY LL+C LP
Sbjct: 96  LLFLQLSVLVVADSLSHYFLLDCYLP 173


>TC222369 similar to UP|Q9LT25 (Q9LT25) Similarity to transcription factor
           CA150b, partial (20%)
          Length = 631

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 31  IPVVGHRVELAEEQLFSELEEEYGASRAKRKVAMTSLEARLDSIGEDVS 79
           IP    R  L E  + +  EEE    RA  K A+   +  LD   ED++
Sbjct: 322 IPSYSARRSLFEHYVKTRAEEERKEKRAALKAAIEGFKRLLDEASEDIN 468


>TC217869 
          Length = 651

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 64 MTSLEARLDSIGEDVSDDFVR 84
          +TSL  R+ S GED+  DFVR
Sbjct: 90 ITSLVTRIPSFGEDICVDFVR 28


>TC217868 
          Length = 764

 Score = 27.3 bits (59), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 64  MTSLEARLDSIGEDVSDDFVR 84
           +TSL  R+ S GED+  DFVR
Sbjct: 115 ITSLVTRIPSFGEDICVDFVR 53


>AW309963 similar to GP|336870|gb|AA alpha-apoprotein {Euglena gracilis},
           partial (3%)
          Length = 464

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 10/26 (38%), Positives = 17/26 (64%)
 Frame = -1

Query: 150 FLQVSLICLSYYHYLLLNCILPLSYI 175
           FL   LICL+YY+ + +N +  L ++
Sbjct: 182 FLWKKLICLAYYYLIEINQVFQLQFL 105


>TC219278 
          Length = 679

 Score = 26.9 bits (58), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
 Frame = +2

Query: 140 NVQYVGG--------CLIFLQVSLICLSYYHYLLLNCILPL 172
           N++Y+GG        C  F    L+CL Y  + LLN  + L
Sbjct: 548 NIKYMGGKLCLGNY*CFRFYLTKLLCLPYSLFHLLNTFISL 670


>TC217495 similar to UP|Q9ASU0 (Q9ASU0) At1g26110/F28B23_21, partial (59%)
          Length = 2299

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 149 IFLQVSLICLSYYHYLLLNCILPL 172
           ++L   LICL+Y+H   L  ++PL
Sbjct: 762 LYLLYLLICLNYHHLYCLRVLVPL 833


>BE805054 
          Length = 349

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 147 CLIFLQVSLICLSYYHYLL 165
           C+I +++ LIC S++H LL
Sbjct: 130 CIILMRLQLICTSFFH*LL 74


>TC207960 similar to UP|Q84WI7 (Q84WI7) Expressed protein, partial (72%)
          Length = 1681

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 12/37 (32%), Positives = 23/37 (61%)
 Frame = +2

Query: 63   AMTSLEARLDSIGEDVSDDFVRSFLLFTIGTFLSSID 99
            A ++++  L+S  ED+S  F+ +F + T+  F  S+D
Sbjct: 1130 AHSTVDTNLNSRREDIS*GFLINFTICTVWPFTKSVD 1240


>TC203696 similar to UP|DHSA_ARATH (O82663) Succinate dehydrogenase
           [ubiquinone] flavoprotein subunit, mitochondrial  (FP)
           (Flavoprotein subunit of complex II) , partial (17%)
          Length = 681

 Score = 26.6 bits (57), Expect = 6.5
 Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 4/77 (5%)
 Frame = +3

Query: 62  VAMTSLEARLDSIGEDVSDDF-VR---SFLLFTIGTFLSSIDGKVDSRYLSFLGNLDDVS 117
           + M S EAR +S G    +DF VR   S++  T+G F  +   ++D R +      D+V 
Sbjct: 213 ITMYSAEARKESRGAHAREDFKVRDDGSWMKHTVG-FWENEKVRLDYRPVHLNVLDDEVE 389

Query: 118 GFAWGAAVIEDLCQWLD 134
            F   A V    C W+D
Sbjct: 390 SFPPKARVY*YTC*WMD 440


>TC229706 homologue to UP|Q84SA6 (Q84SA6) Serine/threonine protein kinase,
            partial (50%)
          Length = 1162

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 160  YYHYLLLNCILPLSYI 175
            YY+Y+ LNC++ L Y+
Sbjct: 1042 YYYYVTLNCLMHLPYL 995


>TC210005 similar to UP|Q6K5G3 (Q6K5G3) Ankyrin repeat-like protein, partial
           (3%)
          Length = 1074

 Score = 26.2 bits (56), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 39  ELAEEQLFSELEEEYGASRA 58
           ELAE +LFS  E+EY ++ A
Sbjct: 418 ELAESELFSSFEQEYDSTLA 359


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.324    0.142    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,296,816
Number of Sequences: 63676
Number of extensions: 119531
Number of successful extensions: 786
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of query: 176
length of database: 12,639,632
effective HSP length: 91
effective length of query: 85
effective length of database: 6,845,116
effective search space: 581834860
effective search space used: 581834860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)


Medicago: description of AC147537.14