TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147537.10 - phase: 0 /pseudo
         (155 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC206552 weakly similar to UP|Q8SX56 (Q8SX56) LD47350p (CG6824-P...    28  1.8
TC225560 similar to UP|Q9FUL8 (Q9FUL8) Arabinogalactan protein, ...    28  2.3
TC207633 similar to UP|Q94AB7 (Q94AB7) AT5g41350/MYC6_6, partial...    27  5.2
TC206593 similar to UP|Q9M683 (Q9M683) Guanylate kinase  , parti...    26  6.7
TC206222 homologue to UP|SECY_PEA (Q9XQU4) Preprotein translocas...    26  8.8

>TC206552 weakly similar to UP|Q8SX56 (Q8SX56) LD47350p (CG6824-PB), partial
           (3%)
          Length = 1401

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 13/41 (31%), Positives = 17/41 (40%)
 Frame = -1

Query: 29  CAMDCPSTRLV*TQHQCS*TEGGWNMGTVGDC*GL*GCCCC 69
           C  +CPS  +    + C *    W     G+C     CCCC
Sbjct: 642 CPCNCPSPCIADCLNCCC*ARIWWCCCC*GNCMNFCRCCCC 520


>TC225560 similar to UP|Q9FUL8 (Q9FUL8) Arabinogalactan protein, partial
           (48%)
          Length = 1030

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 3   VQQYNNSSEIQMQVQNQGCPIHT 25
           +Q+YNNS++  ++ QN+G P  T
Sbjct: 739 IQEYNNSNKACLEDQNKGSPTQT 671


>TC207633 similar to UP|Q94AB7 (Q94AB7) AT5g41350/MYC6_6, partial (33%)
          Length = 825

 Score = 26.6 bits (57), Expect = 5.2
 Identities = 11/29 (37%), Positives = 14/29 (47%)
 Frame = +3

Query: 48  TEGGWNMGTVGDC*GL*GCCCCHNMLENI 76
           T G W  G +G C     CCCC +  E +
Sbjct: 102 TFGRWT*GVMGGC-----CCCCCSAKETV 173


>TC206593 similar to UP|Q9M683 (Q9M683) Guanylate kinase  , partial (66%)
          Length = 1748

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 66 CCCCHNMLE 74
          CCCCH M+E
Sbjct: 75 CCCCHEMME 49


>TC206222 homologue to UP|SECY_PEA (Q9XQU4) Preprotein translocase secY
           subunit, chloroplast precursor (CpSecY), partial (54%)
          Length = 1248

 Score = 25.8 bits (55), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 7   NNSSEIQMQVQNQGCPIHTY--IKCAMDCPSTR 37
           NN++  Q + QN G   +    IKC  DCP+ R
Sbjct: 262 NNTNYQQKEGQNNGTKSNVVCIIKCLSDCPTKR 164


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.367    0.166    0.684 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,609,842
Number of Sequences: 63676
Number of extensions: 128370
Number of successful extensions: 6078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5862
length of query: 155
length of database: 12,639,632
effective HSP length: 89
effective length of query: 66
effective length of database: 6,972,468
effective search space: 460182888
effective search space used: 460182888
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 55 (25.8 bits)