BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147537.1 + phase: 0 /pseudo
(1265 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 45 3e-04
TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucle... 36 0.12
BM308932 35 0.16
BI316328 35 0.16
BE660120 similar to GP|3860319|emb nucleolar protein {Cicer arie... 35 0.21
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 34 0.36
CO981879 34 0.36
CO985160 33 0.61
BM307983 33 0.80
TC228937 similar to UP|Q9LF14 (Q9LF14) CRS2-like protein (At5g16... 33 0.80
BF595216 33 0.80
TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E336... 33 1.0
TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%) 32 1.4
TC214198 weakly similar to UP|Q9LQY3 (Q9LQY3) T24P13.7, partial ... 30 1.4
TC207150 weakly similar to UP|Q9XH73 (Q9XH73) Homeobox leucine z... 32 1.8
BM731380 32 1.8
TC229876 similar to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf pr... 32 1.8
TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), ... 32 2.3
TC219367 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoe... 32 2.3
NP433116 candidate plant disease resistance protein [Glycine max] 31 3.0
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 44.7 bits (104), Expect = 3e-04
Identities = 43/124 (34%), Positives = 60/124 (47%)
Frame = +1
Query: 774 LLLIEKRVLTPFGSKLWLKKFKL*KRHILGT*LIFLQTRFLLDANGSTKLKLVLMEV*SV 833
L L + ++ G KLWL K +L K +LG+ + L R L A+G T LKL M
Sbjct: 22 LPLFVRHLIILAGDKLWLMKCRLLKIMVLGSLFLSLLVRRL*VADGFTLLKLGPMVRLIG 201
Query: 834 IKLAY*PKGTLKSMG*TTKRHLLR*LE*HLFVVSWPLLQFVNGSFFRWMSKMPSFTVI*Q 893
++LA+ + T + M T L LFV S F G F + +MPS TVI +
Sbjct: 202 LRLAWSLRATHRYMALNTVILSLLYFFSPLFVCSLLWRLFDTGPFISLILRMPSSTVILR 381
Query: 894 RKYI 897
R +I
Sbjct: 382 RIFI 393
>TC227154 similar to UP|Q9LJH8 (Q9LJH8) RNA binding protein nucleolysin;
oligouridylate binding protein (AT3g14100/MAG2_5),
partial (92%)
Length = 1698
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/101 (28%), Positives = 48/101 (46%), Gaps = 10/101 (9%)
Frame = +2
Query: 684 KTPCSPLF--------LHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPHLLLLN 735
K CS LF L ++LL LNH I L QVL + ++G+
Sbjct: 182 KLLCSKLFSNNSLSTTLASLLLLRLNHIQVEICLLVLIQVLAAVCMLGTSIHR*LSRFCK 361
Query: 736 LFRMLILYLQLVIPPE*VIHPLILMITIV--ILLLKFFMSL 774
F ++ L++V E + HP+ IT++ +LLL +++S+
Sbjct: 362 KFSRVLAQLKVVSLSERISHPMDSFITLIADLLLLPYYLSM 484
>BM308932
Length = 429
Score = 35.4 bits (80), Expect = 0.16
Identities = 21/49 (42%), Positives = 30/49 (60%)
Frame = -1
Query: 262 LLPCLLLTVILVGFLILRVVII*RLILNHCLLRHLFLLCHQSTQLVAIQ 310
LL LLL +L+ L LR++++ L+L L H FLL HQ QL+ +Q
Sbjct: 336 LLLWLLLYKLLLQLLRLRLLLLLLLLLKQLRLPHRFLLLHQLGQLLLVQ 190
>BI316328
Length = 407
Score = 35.4 bits (80), Expect = 0.16
Identities = 21/49 (42%), Positives = 30/49 (60%)
Frame = -2
Query: 262 LLPCLLLTVILVGFLILRVVII*RLILNHCLLRHLFLLCHQSTQLVAIQ 310
LL LLL +L+ L LR++++ L+L L H FLL HQ QL+ +Q
Sbjct: 340 LLLWLLLYKLLLQLLRLRLLLLLLLLLKQLRLPHRFLLLHQLGQLLLVQ 194
>BE660120 similar to GP|3860319|emb nucleolar protein {Cicer arietinum},
partial (38%)
Length = 720
Score = 35.0 bits (79), Expect = 0.21
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 1/69 (1%)
Frame = -3
Query: 519 LVLLRFYAQTMRWNIVILPC-FSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQFVPF 577
L+LL F A W C F F+ +R + +VLT N +V ++++ LT+F+P
Sbjct: 574 LLLLGFLA*NFNWCFCFHRCIFGFNTFNSRLHDIYVLTRGNSLVIKIKSLLNLLTEFLPK 395
Query: 578 SSQPRVQKS 586
SS +K+
Sbjct: 394 SSSTPFRKA 368
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 34.3 bits (77), Expect = 0.36
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +3
Query: 1109 SYLHTLMRIGQVTQQIVAQQQGIVSS*EVLFFPGVAKSKQLLLVQAQNLNIVLLLMLLLS 1168
+Y +M IG I Q IVSS E + F G A++++L L Q LNI L LL++
Sbjct: 15 NYQDIVMLIGLAVPWIGGLHQAIVSSLEEILFLGKARNRRL*LGLVQKLNIDRWLWLLVN 194
Query: 1169 YFG 1171
G
Sbjct: 195 SCG 203
>CO981879
Length = 576
Score = 34.3 bits (77), Expect = 0.36
Identities = 31/89 (34%), Positives = 38/89 (41%)
Frame = -2
Query: 515 KHNFLVLLRFYAQTMRWNIVILPCFSFSVNKARRFNAHVLTPPNKMVELNENIVTSLTQF 574
KHNF +F+ TM NI+ S + A A VLT NKM LN I T L
Sbjct: 542 KHNFK*K*KFFVVTMEGNILTST*ASXFLKMA*FIKALVLTLHNKMEWLNGKIDTXLK*L 363
Query: 575 VPFSSQPRVQKSFGGKQLLMLSIQLIYFP 603
+ + R Q G KQ + I I P
Sbjct: 362 GHYCFKIRHQNXXGVKQFSLEHI*KIRMP 276
>CO985160
Length = 777
Score = 33.5 bits (75), Expect = 0.61
Identities = 35/114 (30%), Positives = 58/114 (50%)
Frame = +3
Query: 228 LDLLLSLLLPLRVRLPLL*VTLKL*SNRLYLPTPLLPCLLLTVILVGFLILRVVII*RLI 287
LDL LLL LR L L + L L +L L L LLL ++ + L+L ++ + +L+
Sbjct: 420 LDLRKLLLLQLRKLLLLDLLLLLLQLRKLLLLLLQLRKLLLLLLQLRKLLLLLLELRKLL 599
Query: 288 LNHCLLRHLFLLCHQSTQLVAIQ*TSLIPVMYPPQISPCLTHITFLT*HLILFL 341
L LR L LL + +L+ + L+ ++ ++ + H+ L HL+L L
Sbjct: 600 LLLLQLRKLLLLLLELRKLLLLHVR*LLLLLQLRKMLLLVLHLLMLLLHLLLLL 761
>BM307983
Length = 406
Score = 33.1 bits (74), Expect = 0.80
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +3
Query: 819 GSTKLKLVLMEV*SVIKLAY*PKGTLKSMG*TTKRHLLR*L-----E*HLFVVSWPLLQF 873
G +L + LM + I+ + + T K MG +RHLL + HL L+
Sbjct: 15 GYIQLNIRLMTHWTGIRRGWLQRDTSKPMGSIMRRHLLSGKNEYSQDHHLLSSKHNLV-- 188
Query: 874 VNGSFFRWMSKMPSFTVI*QRKYICTLL*VITLLIRSVSF---RKPYMV*NKLLEPGLPS 930
G M KMPS+ ++KY + ++ + F R+PYMV + LL GL
Sbjct: 189 --GRCINLMLKMPSYMEAWKKKYTWRFHLDMVPVMEEIKFAD*RRPYMVSSSLLGLGLVG 362
Query: 931 SILL 934
S+ L
Sbjct: 363 SLKL 374
>TC228937 similar to UP|Q9LF14 (Q9LF14) CRS2-like protein (At5g16140),
partial (81%)
Length = 1035
Score = 33.1 bits (74), Expect = 0.80
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Frame = +2
Query: 506 FIFLLLVWLKHNFLVLLRFYAQTM--RWNIVI 535
FI LLL + KH FL ++RF+ Q M +WNI++
Sbjct: 170 FIILLLQFKKHVFLFVVRFHRQKMELKWNILL 265
>BF595216
Length = 421
Score = 33.1 bits (74), Expect = 0.80
Identities = 20/47 (42%), Positives = 27/47 (56%), Gaps = 2/47 (4%)
Frame = +1
Query: 874 VNGSFFRWMSKMPSFTVI*QRKYICTLL*VITL--LIRSVSFRKPYM 918
+ G F WM MP V +RK IC+ L V+TL + SV+F +P M
Sbjct: 280 ITGPFSSWM*IMPFLMVFYKRKSICSSLQVLTLPPNLWSVNFTRPSM 420
>TC203370 weakly similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial
(27%)
Length = 1507
Score = 32.7 bits (73), Expect = 1.0
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -1
Query: 731 LLLLNLFRMLILYLQLVIPPE-*VIHPLILMITIVILLLKFFMS 773
LLLL LF + IL LQL PP ++ L L++ I++LLL F +S
Sbjct: 553 LLLLLLFFLSILILQLKSPPRALILQHLHLLLLILLLLLIFLLS 422
>TC204052 homologue to UP|Q39835 (Q39835) Extensin, partial (67%)
Length = 1083
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Frame = +1
Query: 1029 TANSHHL--TTLLLKMSPCIDNLLVVLFT*LLLTLIFHMLSI-----KSVNLWPLLGHLI 1081
T HHL T LLL + + +LL L T +FH+LSI + L LL L+
Sbjct: 409 TTTLHHLLSTLLLLHTTTTLHHLLSTLLHLPTTTTLFHLLSIHLLLHTTTTLHHLLSTLL 588
Query: 1082 SLQFFVLSAMLKVLFFMVYASLLIHPWSYLH 1112
L L +++ ++++HP H
Sbjct: 589 LLHTTTTLHHLLSTHLLLHITIILHPHQSTH 681
>TC214198 weakly similar to UP|Q9LQY3 (Q9LQY3) T24P13.7, partial (42%)
Length = 484
Score = 29.6 bits (65), Expect(2) = 1.4
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Frame = +3
Query: 620 LLNIPFLNLLDMLV--LFSCSLMSAQNYNRALACVAFLVMTWNTKDIV 665
LLN L+ L++L+ LF+ +L+SAQ+ N + + ++M NTK +V
Sbjct: 18 LLNSHHLSQLNLLLHHLFAHNLISAQSQNINFSMIMMMMMGSNTKPLV 161
Score = 21.2 bits (43), Expect(2) = 1.4
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +2
Query: 684 KTPCSPLFLHFIILLALNHFISLIPQL 710
KTPC+P +F L F + IPQ+
Sbjct: 149 KTPCAPFSSNFGSLF----FFNRIPQI 217
>TC207150 weakly similar to UP|Q9XH73 (Q9XH73) Homeobox leucine zipper
protein, partial (11%)
Length = 907
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 378 GYLSSNLSTFLKIISLLLL*TPPFINGIFDLVTPQQAKFNLLS 420
GYL NL FLK +SLL L* P + + + P+ K L++
Sbjct: 774 GYLI*NLFIFLKGVSLLSL*LIPILTSLILIARPRHTKIKLMN 902
>BM731380
Length = 433
Score = 32.0 bits (71), Expect = 1.8
Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 725 IFVHPHLLLLNLFRM-LILYLQLVIPPE*VIHPLILMITIVILLLKFFMSLLLI 777
+ +H HLLLL L + L+L L LV+ V+ L+L++ +V+LLL + LLL+
Sbjct: 218 VMMHLHLLLLLLLLLVLVLGLYLVL----VLLLLVLLLLLVLLLLLQVLLLLLV 367
>TC229876 similar to UP|Q9ZP50 (Q9ZP50) FtsH-like protein Pftf precursor,
partial (23%)
Length = 785
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 672 TDYASHVMLLFRKTPCSP-LFLHFIILLALNHFISLIPQLSCFQVLMRITL 721
T + H + R T +P F +++ L L HF+ + Q+ CF+VL+ I +
Sbjct: 1 TSLSFHAAIPNRNTSLAPNSFFNYLTSLLLFHFLHTLSQILCFEVLLLIRM 153
>TC206106 weakly similar to UP|Q7RK82 (Q7RK82) Maebl (Fragment), partial (7%)
Length = 1040
Score = 31.6 bits (70), Expect = 2.3
Identities = 32/101 (31%), Positives = 43/101 (41%), Gaps = 3/101 (2%)
Frame = -2
Query: 679 MLLFRKTPCSPLFLHFIILLALNHFISLIPQLSCFQVLMRITLMGSIFVHPH---LLLLN 735
+LLFR+ LF HF LL HF L+ F L+ + + H LLLL
Sbjct: 1024 LLLFRRINFLLLFYHFCFLLLFRHFNFLL-LFRHFNFLLLFYHFCFLLLFRHFNFLLLLR 848
Query: 736 LFRMLILYLQLVIPPE*VIHPLILMITIVILLLKFFMSLLL 776
F L+L+ L+L +LLL+ F LLL
Sbjct: 847 PFNFLLLFRHFNF-------LLLLRHFCFLLLLRHFCFLLL 746
>TC219367 weakly similar to UP|Q9FFJ6 (Q9FFJ6) Phosphate/phosphoenolpyruvate
translocator protein-like, partial (65%)
Length = 939
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/46 (36%), Positives = 26/46 (55%), Gaps = 1/46 (2%)
Frame = +2
Query: 1074 WPLLGHLISLQFFVLSAMLKVLFFMV-YASLLIHPWSYLHTLMRIG 1118
W L HLI FF LS L +L +V + ++I PW+++ + IG
Sbjct: 647 WLLS*HLILRVFFFLSLFLLILHNLV*FNFIIIFPWNWVELITAIG 784
>NP433116 candidate plant disease resistance protein [Glycine max]
Length = 686
Score = 31.2 bits (69), Expect = 3.0
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 5/70 (7%)
Frame = +2
Query: 243 PLL*VTLKL*SNRLYLPTPLLPCLLLTVILVGFLILRV-----VII*RLILNHCLLRHLF 297
P+ +L L* + PT + LLT++L FL+ + + + L HCL L+
Sbjct: 353 PIHLASLML*KLLAFAPTYSVEIFLLTLVL--FLLFSISTSSIITFLVIYLPHCLPNSLY 526
Query: 298 LLCHQSTQLV 307
L+CH + LV
Sbjct: 527 LICHITPSLV 556
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.158 0.516
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,773,817
Number of Sequences: 63676
Number of extensions: 1126116
Number of successful extensions: 13307
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 9630
Number of HSP's successfully gapped in prelim test: 433
Number of HSP's that attempted gapping in prelim test: 3012
Number of HSP's gapped (non-prelim): 10936
length of query: 1265
length of database: 12,639,632
effective HSP length: 108
effective length of query: 1157
effective length of database: 5,762,624
effective search space: 6667355968
effective search space used: 6667355968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC147537.1