BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147517.11 + phase: 0
(83 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI900098 78 9e-16
TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (C... 33 0.025
TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fr... 30 0.17
BU763006 29 0.48
TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing prote... 28 0.63
TC224890 similar to UP|TIP2_TOBAC (P24422) Probable aquaporin TI... 27 1.8
BG154218 similar to GP|10177361|db cell cycle control crn (crook... 26 3.1
BG315802 25 5.3
BM187949 25 6.9
TC219113 similar to UP|Q9FIK3 (Q9FIK3) Emb|CAB71043.1, partial (... 25 9.1
TC217241 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (73%) 25 9.1
BM093163 25 9.1
>AI900098
Length = 208
Score = 77.8 bits (190), Expect = 9e-16
Identities = 34/39 (87%), Positives = 35/39 (89%)
Frame = +2
Query: 45 KVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRR 83
K VEVY RA QGVTYS DMWLHYCIFAI+TYGDPDTVRR
Sbjct: 2 KAVEVYHRAAQGVTYSADMWLHYCIFAITTYGDPDTVRR 118
>TC232109 similar to UP|Q8GTX9 (Q8GTX9) Cell cycle control crn (Crooked neck)
protein-like, partial (30%)
Length = 916
Score = 33.1 bits (74), Expect = 0.025
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 2 IFLLKNNILKMRRVYDAFLAEFPL-CYGYWKKYADHEARLGSADKVVEVYERAV 54
I L NI + R++Y+ +L P CY W KYA+ E L D+ ++E A+
Sbjct: 335 IELQLGNIDRCRKLYEKYLEWSPENCYA-WSKYAELERSLSETDRARAIFELAI 493
Score = 26.6 bits (57), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIF 70
WK Y + E G ++ +YER + T + +WL Y F
Sbjct: 527 WKAYINFETAEGEFERARALYERLLDR-TKHLKVWLSYAEF 646
Score = 26.2 bits (56), Expect = 3.1
Identities = 11/38 (28%), Positives = 22/38 (56%)
Frame = +2
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHY 67
+KKY + E +LG+ D+ ++YE+ ++ + W Y
Sbjct: 317 FKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKY 430
>TC205508 weakly similar to UP|Q86UA1 (Q86UA1) PRPF39 protein (Fragment),
partial (5%)
Length = 1358
Score = 30.4 bits (67), Expect = 0.17
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCI 69
W Y D R G K+ ++YER V + W+ Y +
Sbjct: 599 WHNYLDFIEREGDLSKIAKLYERCVIACANYPEYWIRYVL 718
>BU763006
Length = 421
Score = 28.9 bits (63), Expect = 0.48
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +2
Query: 20 LAEFPLCYGYWKKYADHEAR-----LGSADKVVEVYERAVQGV 57
LAE P YWK H+ + S+DK +++ + V GV
Sbjct: 29 LAETPTVINYWKMICRHQTLEIIGVIISSDKTIQIINKCVDGV 157
>TC229825 similar to UP|Q9LHM6 (Q9LHM6) Pre-rRNA processing protein RRP5,
partial (10%)
Length = 980
Score = 28.5 bits (62), Expect = 0.63
Identities = 13/42 (30%), Positives = 21/42 (49%)
Frame = +3
Query: 13 RRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAV 54
R +++ L E+P W Y D E + D + ++ERAV
Sbjct: 312 RSMFEKILREYPKRTDLWSVYLDQEIQHKDEDIIHALFERAV 437
>TC224890 similar to UP|TIP2_TOBAC (P24422) Probable aquaporin TIP-type
RB7-18C (Tonoplast intrinsic protein, root-specific
RB7-18C) (TobRB7) (RT-TIP), partial (71%)
Length = 778
Score = 26.9 bits (58), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 26 CYGYWKKYADHEARLGSADKVVEVYERAVQ-GVTYSV 61
C+GYW+ H G D V+E + G+ Y+V
Sbjct: 546 CFGYWQSIPSHAPATGVNDFQAVVFEIVITFGLVYTV 656
>BG154218 similar to GP|10177361|db cell cycle control crn (crooked neck)
protein-like {Arabidopsis thaliana}, partial (16%)
Length = 339
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 28 GYWKKYADHEARLGSADKVVEVYERAV 54
G W +YA E + G + VYERAV
Sbjct: 30 GAWIRYAKFEMKNGEVARSRNVYERAV 110
>BG315802
Length = 423
Score = 25.4 bits (54), Expect = 5.3
Identities = 13/48 (27%), Positives = 24/48 (49%), Gaps = 6/48 (12%)
Frame = +3
Query: 11 KMRRVYDAFLAEFPLCYGYWKKYADHEARLGSA------DKVVEVYER 52
K+ R +A FPL W+++ E L +A +++++YER
Sbjct: 279 KLSRAREAMSELFPLSPAIWRQWIKDELSLNTATRPEAFSRILKLYER 422
>BM187949
Length = 429
Score = 25.0 bits (53), Expect = 6.9
Identities = 10/21 (47%), Positives = 12/21 (56%)
Frame = -3
Query: 57 VTYSVDMWLHYCIFAISTYGD 77
+T SV W+H I S YGD
Sbjct: 199 LTISVSNWVHLAIHVPSNYGD 137
>TC219113 similar to UP|Q9FIK3 (Q9FIK3) Emb|CAB71043.1, partial (15%)
Length = 1031
Score = 24.6 bits (52), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 23 FPLCYGYWKKYADHE 37
FP GYW KY D++
Sbjct: 211 FPKFRGYWTKYVDYD 255
>TC217241 similar to UP|Q9SW88 (Q9SW88) Amine oxidase, partial (73%)
Length = 2294
Score = 24.6 bits (52), Expect = 9.1
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 5/51 (9%)
Frame = +2
Query: 18 AFLAEFPLCYGYWKKYADHEARL-----GSADKVVEVYERAVQGVTYSVDM 63
A LA P+ G++ + RL S + V Y + ++GVT VDM
Sbjct: 14 ADLACLPISSGWYGTQVEENTRLIKVQCYSKEGTVNFYMKPIEGVTALVDM 166
>BM093163
Length = 428
Score = 24.6 bits (52), Expect = 9.1
Identities = 14/50 (28%), Positives = 18/50 (36%)
Frame = +2
Query: 30 WKKYADHEARLGSADKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPD 79
W E G KVV + E+A VD L I + Y D +
Sbjct: 2 WDLMGTEEGAHGKVTKVVSLIEKATNSTAPEVDPRLLKAIKTVVRYSDSE 151
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.328 0.142 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,811,460
Number of Sequences: 63676
Number of extensions: 37859
Number of successful extensions: 329
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of query: 83
length of database: 12,639,632
effective HSP length: 59
effective length of query: 24
effective length of database: 8,882,748
effective search space: 213185952
effective search space used: 213185952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147517.11