BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147497.9 - phase: 0
(148 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205708 weakly similar to UP|O35685 (O35685) MNUDC protein (Nuc... 64 3e-11
TC205710 similar to UP|Q8L5X1 (Q8L5X1) Fimbrin-like protein (Act... 63 6e-11
TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 p... 58 1e-09
TC210282 32 0.086
TC234145 similar to UP|Q84L08 (Q84L08) GONST4 Golgi Nucleotide s... 32 0.15
TC222824 weakly similar to GB|AAA98791.1|212879|CHKVITB vitellog... 31 0.19
TC218273 similar to UP|Q9LM40 (Q9LM40) T10O22.3 (AT1g18060/T10F2... 30 0.33
TC220881 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, pa... 30 0.33
BE023042 similar to SP|P26585|HMGL HMG1/2-like protein (SB11 pro... 30 0.43
NP005385 DNA-directed RNA polymerase 28 1.2
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 28 1.2
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 28 1.2
TC216791 similar to UP|O23144 (O23144) Proton pump interactor (A... 28 1.2
CO985236 28 1.6
TC230825 similar to UP|O48683 (O48683) F3I6.9 protein, partial (... 28 1.6
BG239747 28 2.1
BU547853 28 2.1
TC213518 weakly similar to UP|Q9FL53 (Q9FL53) Gb|AAD39647.1, par... 28 2.1
TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, ... 27 2.8
TC227433 UP|Q7XZ08 (Q7XZ08) Galactinol synthase, complete 27 4.7
>TC205708 weakly similar to UP|O35685 (O35685) MNUDC protein (Nuclear
distribution gene C homolog) (Sig 92 protein) (Mus
musculus 10 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:6530413H12
product:nuclear distribution gene C homolog
(Aspergillus), full inser, partial (15%)
Length = 757
Score = 63.5 bits (153), Expect = 3e-11
Identities = 42/124 (33%), Positives = 62/124 (49%), Gaps = 11/124 (8%)
Frame = +3
Query: 28 KTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDSAEKVVLSAI 87
K SSP SS FS+TFD SNP AFL+ VF+F++++S F SAEK ++S +
Sbjct: 57 KPAHSSPPQPQSSSSSSSFSATFDRSNPIAFLERVFEFVSEQS-DFLATQSAEKEIVSLV 233
Query: 88 CTVKVKKAKITVEEK----------MKVDKAAAVAEKKAKDVYE-KEDEKKDEESGLTAP 136
KK ++ E+ +KV + EK+ + E K ++ ES P
Sbjct: 234 HAAGKKKRELLKAERENADKKKREDLKVTEERQKVEKRLNEEKELKAEDTNKNESASRVP 413
Query: 137 NQGN 140
N+GN
Sbjct: 414 NKGN 425
>TC205710 similar to UP|Q8L5X1 (Q8L5X1) Fimbrin-like protein (Actin binding
motif), partial (11%)
Length = 714
Score = 62.8 bits (151), Expect = 6e-11
Identities = 44/107 (41%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Frame = +2
Query: 28 KTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDSAEKVVLSAI 87
K SSP QP+SS FS TFD SNP FL VF+F++ E + F + SAEK V S +
Sbjct: 74 KPAHSSPP-QPQSSSS-SFSGTFDMSNPITFLVRVFEFVS-EHSDFLETKSAEKEVASLV 244
Query: 88 CTVKVKKAKITVE----EKMKVDKAAAVAEKKAKDVYEKEDEKKDEE 130
C V+ K+ + VE EK K + A E+ D KE++K E
Sbjct: 245 CAVEKKREFLKVEREKVEKKKREDLKASKERGKSDKRLKEEKKSKAE 385
>TC205709 weakly similar to UP|O45549 (O45549) C. elegans NUD-1 protein
(Corresponding sequence F53A2.4), partial (31%)
Length = 1291
Score = 58.2 bits (139), Expect = 1e-09
Identities = 42/124 (33%), Positives = 62/124 (49%), Gaps = 12/124 (9%)
Frame = +2
Query: 29 TQTSSPSYQPKSSKPIP-FSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDSAEKVVLSAI 87
T +S P Q SS FS+ FD SNP AFL+ VF F++ E + F +SAEK + +
Sbjct: 83 THSSPPQPQSSSSSSSSSFSAAFDRSNPIAFLERVFQFVS-EHSDFLATESAEKEIALLV 259
Query: 88 CTVKVKKAKITVEEKMKVD-------KAAAVAEKKAKDVYEKEDEKKD----EESGLTAP 136
KK + E+ K + KA+ EK K + E+++ K + +ES P
Sbjct: 260 RAAGKKKREFLKSEREKAEKKKREDLKASEEREKSDKRLKEEKEPKAEDTSKDESTSKVP 439
Query: 137 NQGN 140
N+GN
Sbjct: 440 NKGN 451
>TC210282
Length = 806
Score = 32.3 bits (72), Expect = 0.086
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 2/142 (1%)
Frame = -3
Query: 8 SSIKKSFNVFVTKRIIVQTVKTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIA 67
S +KKS + +TK+++ + V Q SK + +S F+PSN + +
Sbjct: 654 SLLKKSIKMLITKKLVKEVVNVQ--------NRSKKLLMASDFEPSNEIS--GGEWYTEG 505
Query: 68 KESTSFFDNDSAEKVVLSAICTVKVKKAKITVEEKMK--VDKAAAVAEKKAKDVYEKEDE 125
K T F D LS C +++ K+ E + + KA K + K+
Sbjct: 504 KLDTEFIDK-------LSEACFSSIRRLKVATCEGILEWIRKAGGGVSKGQMEQILKKLV 346
Query: 126 KKDEESGLTAPNQGNLMRVIIG 147
+++ +T+ G+ V +G
Sbjct: 345 MENKVQEVTSDGSGDFESVPVG 280
>TC234145 similar to UP|Q84L08 (Q84L08) GONST4 Golgi Nucleotide sugar
transporter (Fragment), partial (29%)
Length = 442
Score = 31.6 bits (70), Expect = 0.15
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +1
Query: 29 TQTSSPSYQPKSSKPIPFSSTFDPSNPT 56
T T SPS PK+S P P SST PS+PT
Sbjct: 307 TTTPSPSPPPKNSSPPPSSST-SPSSPT 387
>TC222824 weakly similar to GB|AAA98791.1|212879|CHKVITB vitellogenin {Gallus
gallus;} , partial (17%)
Length = 703
Score = 31.2 bits (69), Expect = 0.19
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 100 EEKMKVDKAAAVAEKKAKDVYEKEDEKKDEESG 132
EE+ K+D + E +DVYE E+E+++E +G
Sbjct: 114 EERAKIDVNPSQEEVAVEDVYEHEEEEEEEATG 212
>TC218273 similar to UP|Q9LM40 (Q9LM40) T10O22.3 (AT1g18060/T10F20.23),
partial (76%)
Length = 954
Score = 30.4 bits (67), Expect = 0.33
Identities = 25/87 (28%), Positives = 41/87 (46%)
Frame = +2
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDSAEKVVLSAICTVK 91
SSP ++P ++ P+ + ++ +N F + + + D E LS+ V+
Sbjct: 35 SSPQFKPLNAIPLGGTKLYNNNN--------VKFPRERTRTRATLDDVETDQLSSTPLVE 190
Query: 92 VKKAKITVEEKMKVDKAAAVAEKKAKD 118
KAK VEE +KV K AA K A +
Sbjct: 191 NDKAKKDVEESVKVLKDAAKTRKVAAE 271
>TC220881 similar to UP|Q9T0K5 (Q9T0K5) Extensin-like protein, partial (3%)
Length = 728
Score = 30.4 bits (67), Expect = 0.33
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Frame = +3
Query: 31 TSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDSAEKVVLSA-ICT 89
+++PS P + P F T SN T F + T D SA+ +V +A I
Sbjct: 366 STNPSAAPAPAPPF-FCPTCLDSNFTYFK------LPDRKTGAVDVQSAKVLVTAARIAA 524
Query: 90 VKVKKAKITVE-EKMKVDKAAAVAEKKAKDVYE-------KEDEKKDEE 130
V + KA + + + AAVA K+AKD E +E ++DEE
Sbjct: 525 VSMSKAAAVARFDAERRAREAAVARKRAKDALEHLAEILAREQAEQDEE 671
>BE023042 similar to SP|P26585|HMGL HMG1/2-like protein (SB11 protein).
[Soybean] {Glycine max}, partial (84%)
Length = 388
Score = 30.0 bits (66), Expect = 0.43
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +2
Query: 5 TATSSIKKSFNVFVTKRIIVQTVKTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFD 64
T T S + + + V KR T+ P+ + K++K DPS P VFD
Sbjct: 14 TKTESNRANPKLAVNKR----GTATKARKPAGKGKAAK--------DPSKPKRPASAVFD 157
Query: 65 FIAKESTSFFDNDSAEKVVLSAICTVKVKKAKITVEEKMKVDKAAAVAE-KKAKDVYEK 122
FI + F S E A+C V K A+ + +KA VAE +K K +EK
Sbjct: 158 FIEEFRKVF----SKEHPENKAVCAVG-KSARTKWKTMSDAEKAPYVAESEKRKVEFEK 319
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S T+ PS+P
Sbjct: 2722 TSPSYSPTSPSYSPSSPTYSPSSP 2793
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SP+Y P S P S ++ PS+PT
Sbjct: 2701 TSPNYSPTSPSYSPTSPSYSPSSPT 2775
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 2536 TSPSYSPTSPAYSPTSPSYSPTSPS 2610
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S + P++P+
Sbjct: 2515 TSPSYSPTSPSYSPTSPAYSPTSPS 2589
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S ++ P++P
Sbjct: 2494 TSPSYSPTSPSYSPTSPSYSPTSP 2565
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S T+ PS+P
Sbjct: 1741 TSPSYSPTSPSYSPSSPTYSPSSP 1812
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SP+Y P S P S ++ PS+PT
Sbjct: 1720 TSPNYSPTSPSYSPTSPSYSPSSPT 1794
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 1453 TSPSYSPTSPSYSPTSPSYSPTSPS 1527
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 1432 TSPSYSPTSPSYSPTSPSYSPTSPS 1506
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 1264 TSPSYSPTSPSYSPTSPSYSPTSPS 1338
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 1285 TSPSYSPTSPSYSPTSPSYSPTSPS 1359
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S ++ P++P
Sbjct: 1474 TSPSYSPTSPSYSPTSPSYSPTSP 1545
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +1
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S ++ P++P
Sbjct: 1306 TSPSYSPTSPSYSPTSPSYSPTSP 1377
Score = 25.8 bits (55), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 31 TSSPSYQPKSSKPIPFSSTFDPSNP 55
TSSP Y P S P S + P++P
Sbjct: 1093 TSSPGYSPSSPGYSPSSPGYSPTSP 1167
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) , complete
Length = 1826
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S T+ PS+P
Sbjct: 1263 TSPSYSPTSPSYSPSSPTYSPSSP 1334
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SP+Y P S P S ++ PS+PT
Sbjct: 1242 TSPNYSPTSPSYSPTSPSYSPSSPT 1316
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 975 TSPSYSPTSPSYSPTSPSYSPTSPS 1049
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 954 TSPSYSPTSPSYSPTSPSYSPTSPS 1028
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 807 TSPSYSPTSPSYSPTSPSYSPTSPS 881
Score = 26.2 bits (56), Expect = 6.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNPT 56
+SPSY P S P S ++ P++P+
Sbjct: 828 TSPSYSPTSPSYSPTSPSYSPTSPS 902
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S ++ P++P
Sbjct: 996 TSPSYSPTSPSYSPTSPSYSPTSP 1067
Score = 25.8 bits (55), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (61%)
Frame = +3
Query: 32 SSPSYQPKSSKPIPFSSTFDPSNP 55
+SPSY P S P S ++ P++P
Sbjct: 849 TSPSYSPTSPSYSPTSPSYSPTSP 920
Score = 25.8 bits (55), Expect = 8.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 31 TSSPSYQPKSSKPIPFSSTFDPSNP 55
TSSP Y P S P S + P++P
Sbjct: 615 TSSPGYSPSSPGYSPSSPGYSPTSP 689
>TC216791 similar to UP|O23144 (O23144) Proton pump interactor
(AT4g27500/F27G19_100), partial (25%)
Length = 1385
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 22/72 (30%)
Frame = +3
Query: 91 KVKKAKITVEEKMKVDKAAAV---------AEKKAKDVYEK-------------EDEKKD 128
++ KAK +E K K+ + AA AEKK KD +K EDE KD
Sbjct: 663 EIAKAKQALERKKKLAEKAAAKAAIRAQKEAEKKLKDREKKAKKKSGTAAVANPEDEPKD 842
Query: 129 EESGLTAPNQGN 140
E +T P + N
Sbjct: 843 EVVEVTEPEKIN 878
>CO985236
Length = 466
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/31 (41%), Positives = 20/31 (63%)
Frame = -1
Query: 99 VEEKMKVDKAAAVAEKKAKDVYEKEDEKKDE 129
VEE +VD V +KK ++ E E++KKD+
Sbjct: 304 VEEDGEVDGVKKVEDKKGDELKEIEEDKKDD 212
>TC230825 similar to UP|O48683 (O48683) F3I6.9 protein, partial (20%)
Length = 1540
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Frame = +3
Query: 5 TATSSIKKSFNVFVTKRIIVQTVKTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFD 64
T SS +K + +T+R I TSS + ++KP+ S + PSNP ++
Sbjct: 912 TPASSTRKGSSPSLTRRQI-------TSSGESRKFANKPLHMSLSLAPSNPDPAPQSTM- 1067
Query: 65 FIAKESTSFFDNDSAEKVVLSAICTVK--VKKAKITVEEKMKVDK----AAAVAEKKAKD 118
+ +N + +V A T + + K +VE+K + K V++
Sbjct: 1068 ----RRSLIMENMGDKDIVKRAFKTFQNSFNQPKTSVEDKSLIKKQVPSRGTVSKVPTST 1235
Query: 119 VYEKEDEKKDEESGLTAPNQGNLMRVIIG 147
KE+ + + L GN +R +G
Sbjct: 1236 TLRKENGRPTKVENLY--QSGNAVRTTLG 1316
>BG239747
Length = 360
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 33 SPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIA 67
SPS +++KP+ +SST P+ T F++ V IA
Sbjct: 244 SPSPMSQTTKPLAYSSTQAPT*NTFFIQIVITMIA 348
>BU547853
Length = 686
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/105 (23%), Positives = 44/105 (41%)
Frame = -2
Query: 19 TKRIIVQTVKTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDS 78
T R ++QTV+ T S+ + + F + P + NV++ + +N
Sbjct: 565 TYRDLLQTVQV-TKPTSFAEQDFLNMYFKDKYRP------IPNVYNLVLAMLWRHPENVE 407
Query: 79 AEKVVLSAICTVKVKKAKITVEEKMKVDKAAAVAEKKAKDVYEKE 123
EKV + C K + T +E+ + + KK D+YE E
Sbjct: 406 LEKVKVVHYCAAGSKPXRYTGKEENMEREDIKMLVKKWWDIYEDE 272
>TC213518 weakly similar to UP|Q9FL53 (Q9FL53) Gb|AAD39647.1, partial (22%)
Length = 571
Score = 27.7 bits (60), Expect = 2.1
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = +2
Query: 28 KTQTSSPSYQPKSSKPIPFSSTFDPSNPT 56
KTQ SSPS P S P S + PS+ T
Sbjct: 137 KTQPSSPSKTPPSKTPPTLSGSSKPSSST 223
>TC220333 weakly similar to UP|MNN4_YEAST (P36044) MNN4 protein, partial (3%)
Length = 536
Score = 27.3 bits (59), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 83 VLSAICTVKVKKAKITVEEKMKVDKAAAVAEKKAKDVYEKEDEKKDEESG 132
V+ + TVK+ K V + + A EKK + EK++EKK E G
Sbjct: 9 VIGQMDTVKIVKKLKKVGKVDIISVGPAKEEKKEEKKEEKKEEKKRREKG 158
Score = 26.2 bits (56), Expect = 6.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 91 KVKKAKITVEEKMKVDKAAAVAEKKAKDVYEKEDEKKDEE 130
K ++ K K K K EKK + EK++EKK+E+
Sbjct: 94 KKRRKKKRKRRKRKKKKEEKKEEKKEEKKEEKKEEKKEEK 213
>TC227433 UP|Q7XZ08 (Q7XZ08) Galactinol synthase, complete
Length = 1467
Score = 26.6 bits (57), Expect = 4.7
Identities = 25/105 (23%), Positives = 44/105 (41%)
Frame = +1
Query: 19 TKRIIVQTVKTQTSSPSYQPKSSKPIPFSSTFDPSNPTAFLKNVFDFIAKESTSFFDNDS 78
T R ++QTV+ T S+ + + F + P + NV++ + +N
Sbjct: 826 TYRDLLQTVQV-TKPTSFAEQDFLNMYFKDKYRP------IPNVYNLVLAMLWRHPENVE 984
Query: 79 AEKVVLSAICTVKVKKAKITVEEKMKVDKAAAVAEKKAKDVYEKE 123
EKV + C K + T +E+ + + KK D+YE E
Sbjct: 985 LEKVKVVHYCAAGSKPWRYTGKEENMEREDIKMLVKKWWDIYEDE 1119
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,757,838
Number of Sequences: 63676
Number of extensions: 50645
Number of successful extensions: 476
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of query: 148
length of database: 12,639,632
effective HSP length: 88
effective length of query: 60
effective length of database: 7,036,144
effective search space: 422168640
effective search space used: 422168640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC147497.9