BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147497.3 - phase: 0
(382 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BQ273711 90 1e-18
CF922015 86 3e-17
TC233976 67 1e-11
TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 56 2e-08
TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana geno... 55 7e-08
TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequen... 50 1e-06
TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L1... 50 2e-06
TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), ... 50 2e-06
TC227589 48 8e-06
TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 46 3e-05
CO980191 45 4e-05
TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like prot... 44 9e-05
TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, pa... 44 9e-05
TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (G... 42 6e-04
TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich p... 39 0.003
BE804023 36 0.033
TC230490 similar to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, part... 34 0.096
TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp... 34 0.096
TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein... 33 0.21
TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, part... 33 0.21
>BQ273711
Length = 409
Score = 90.1 bits (222), Expect = 1e-18
Identities = 46/114 (40%), Positives = 59/114 (51%)
Frame = -2
Query: 7 DALVAALEAVAQAVQQQPKVETGSDGTKMLENFLRNHPPTFKGRYDPDGAQKWLKEIERI 66
D + A LE + Q +P G L F +NHPP F G YDP+GA+ WL E E+I
Sbjct: 324 DRITAVLETLVQERDVEPAEYRG------LMAFRKNHPPKFSGDYDPEGARLWLAETEKI 163
Query: 67 FRVMQCSEVQKVRFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFKKEFLGRY 120
F M C E KV + T ML EA++WW + P V+ W FK +FL Y
Sbjct: 162 FEAMGCLEEHKVLYATFMLQGEAENWWKFVKPSFVAPGGVIPWNAFKDKFLENY 1
>CF922015
Length = 172
Score = 85.9 bits (211), Expect = 3e-17
Identities = 37/54 (68%), Positives = 46/54 (84%)
Frame = -3
Query: 36 LENFLRNHPPTFKGRYDPDGAQKWLKEIERIFRVMQCSEVQKVRFGTHMLAEEA 89
L+ F RN+PPTFKG YDP+GA+ WL+EIE+IFRVM+C + QKV F THMLA+EA
Sbjct: 164 LDRFQRNNPPTFKGGYDPEGAEAWLREIEKIFRVMECQDHQKVLFATHMLADEA 3
>TC233976
Length = 763
Score = 67.0 bits (162), Expect = 1e-11
Identities = 37/128 (28%), Positives = 60/128 (45%), Gaps = 9/128 (7%)
Frame = +1
Query: 204 QEDTKAHYKIMSERRGKGQQ----NRPKPYSAPADK-----GKQKMGDDRRPKRRDAHVE 254
Q++ A YK + GK ++ +R KPYSAP + G++ G V
Sbjct: 25 QQEKVAFYKNANASHGKEKKPMTHSRAKPYSAPLEYENHYGGQRTSGGHHLAGGSSQLVN 204
Query: 255 IVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPK 314
V G G + +C +CG+ GH+ EC ++ C+N G+GH+S+ CP P+
Sbjct: 205 RVSQPAGRGGSGAPAIVTTPLRCRKCGRLGHNAHECTYREVTCFNYQGKGHLSTNCPHPR 384
Query: 315 KTRTGGKV 322
K + G +
Sbjct: 385 KEKRSGSL 408
>TC206178 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (69%)
Length = 1138
Score = 56.2 bits (134), Expect = 2e-08
Identities = 33/118 (27%), Positives = 51/118 (42%), Gaps = 2/118 (1%)
Frame = +2
Query: 206 DTKAHYKIMSERRGKGQQNRPKPYSAP--ADKGKQKMGDDRRPKRRDAHVEIVCYKCGEK 263
+ K +K+ S+ R + + P +D+ + RR RR + +C C
Sbjct: 185 ERKKKWKMSSDSRSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRP 364
Query: 264 GHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKKTRTGGK 321
GH + C + C CG GH +EC + C+NC GH++S CP T GK
Sbjct: 365 GHYARECP-NVAICHNCGLPGHIASECTTKSL-CWNCKEPGHMASSCPNEGICHTCGK 532
Score = 48.9 bits (115), Expect = 4e-06
Identities = 28/93 (30%), Positives = 40/93 (42%), Gaps = 26/93 (27%)
Frame = +2
Query: 254 EIVCYKCGEKGHKSNVCGR------DDRKCFRCGQKGHSLAECKR--------------- 292
E +C+ CG+ GH++ C D R C C ++GH AEC
Sbjct: 506 EGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLAR 685
Query: 293 ---GDIVCYNCNGEGHISSQCPEPK--KTRTGG 320
D +C CN GH++ QCP+ R+GG
Sbjct: 686 DCPNDPICNLCNVSGHVARQCPKANVLGDRSGG 784
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 25/88 (28%)
Frame = +2
Query: 249 RDAHVEIVCYKCGEKGHKSNVC-------------------------GRDDRKCFRCGQK 283
RD + +C C GH + C G D C C Q
Sbjct: 683 RDCPNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGGGGGYRDVVCRNCQQL 862
Query: 284 GHSLAECKRGDIVCYNCNGEGHISSQCP 311
GH +C ++C+NC G GH++ +CP
Sbjct: 863 GHMSRDCMGPLMICHNCGGRGHLAYECP 946
Score = 36.2 bits (82), Expect = 0.025
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 254 EIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRG 293
++VC C + GH S C C CG +GH EC G
Sbjct: 833 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSG 952
Score = 35.4 bits (80), Expect = 0.043
Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 25/85 (29%)
Frame = +2
Query: 254 EIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRG-------------------- 293
E C C + GH + C D C C GH +C +
Sbjct: 641 EKACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARQCPKANVLGDRSGGGGGGGGARGGG 817
Query: 294 -----DIVCYNCNGEGHISSQCPEP 313
D+VC NC GH+S C P
Sbjct: 818 GGGYRDVVCRNCQQLGHMSRDCMGP 892
>TC228935 similar to UP|Q9FHC2 (Q9FHC2) Arabidopsis thaliana genomic DNA,
chromosome 5, TAC clone:K24M7, partial (36%)
Length = 1224
Score = 54.7 bits (130), Expect = 7e-08
Identities = 23/80 (28%), Positives = 41/80 (50%), Gaps = 13/80 (16%)
Frame = +1
Query: 246 PKRRDAHVEIVCYKCGEKGHKSNVC------GRDDRKCFRCGQKGHSLAEC----KRGD- 294
P++ + +C +C +GH++ C +D + C+ CG+ GH+L +C + G
Sbjct: 313 PEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHPLQEGGT 492
Query: 295 --IVCYNCNGEGHISSQCPE 312
C+ CN GH+S CP+
Sbjct: 493 KFAECFVCNQRGHLSKNCPQ 552
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Frame = +1
Query: 257 CYKCGEKGHKSNVC-------GRDDRKCFRCGQKGHSLAECKRGDI-------VCYNCNG 302
CY CGE GH C G +CF C Q+GH C + C C G
Sbjct: 424 CYNCGENGHALTQCLHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGG 603
Query: 303 EGHISSQCPEPKKT 316
H++ CP+ K+
Sbjct: 604 VTHLAKDCPDKGKS 645
Score = 42.7 bits (99), Expect = 3e-04
Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 29/129 (22%)
Frame = +1
Query: 225 RPKPYSAPADKGKQKMGD----------DRRPKRRDAHVEIV--------CYKCGEKGHK 266
+PKP + P D K+K + + +P R H+ V C+ C H
Sbjct: 124 KPKP-TPPKDPDKKKKKNKNSAFKRKRPEPKPGSRKRHLLRVPGMKPGESCFICKAMDHI 300
Query: 267 SNVCGRD-----DRKCFRCGQKGHSLAECK------RGDIVCYNCNGEGHISSQCPEPKK 315
+ +C ++ C RC ++GH C + CYNC GH +QC P
Sbjct: 301 AKLCPEKAEWEKNKICLRCRRRGHRAKNCPEVLDGAKDAKYCYNCGENGHALTQCLHP-- 474
Query: 316 TRTGGKVFA 324
+ GG FA
Sbjct: 475 LQEGGTKFA 501
>TC223754 similar to UP|Q86EQ4 (Q86EQ4) Clone ZZD1536 mRNA sequence, partial
(22%)
Length = 742
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 22/95 (23%)
Frame = +2
Query: 248 RRDAHVEIVCYKCGEKGHKSNVCGRDDRK----------CFRCGQKGHSLAECKR----- 292
RR+ CY+CGE GH + C R CF CG GH +C R
Sbjct: 17 RRNGGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVRGGGGS 196
Query: 293 -------GDIVCYNCNGEGHISSQCPEPKKTRTGG 320
G C+ C G GH++ C K GG
Sbjct: 197 VGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGG 301
Score = 45.1 bits (105), Expect = 5e-05
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 24/80 (30%)
Frame = +2
Query: 257 CYKCGEKGHKSNVC---------GRDDRKCFRCGQKGHSLAECKR--------------- 292
C++CG GH + C G CFRCG+ GH +C
Sbjct: 230 CFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRFGGGGGSGGGG 409
Query: 293 GDIVCYNCNGEGHISSQCPE 312
G C+NC GH + +C E
Sbjct: 410 GKSTCFNCGKPGHFARECVE 469
>TC227588 similar to PIR|T00837|T00837 glycine-rich protein T13L16.11 -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(10%)
Length = 1300
Score = 50.1 bits (118), Expect = 2e-06
Identities = 25/68 (36%), Positives = 35/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 257 CYKCGEKGHKSNVCGRDDRK--CFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPK 314
C+ CGE+GH + C RK C+ CG GH+ +C + C+ C GH + CPE K
Sbjct: 61 CFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQCSKVQ-DCFICKKGGHRAKDCPE-K 234
Query: 315 KTRTGGKV 322
T T +
Sbjct: 235 HTSTSKSI 258
Score = 44.3 bits (103), Expect = 9e-05
Identities = 19/46 (41%), Positives = 23/46 (49%), Gaps = 9/46 (19%)
Frame = +1
Query: 254 EIVCYKCGEKGHKSNVC---------GRDDRKCFRCGQKGHSLAEC 290
EI CYKCG+ GH C G CF+CG++GH EC
Sbjct: 409 EISCYKCGQLGHTGLACSRLRDEITSGATPSSCFKCGEEGHFAREC 546
Score = 43.5 bits (101), Expect = 2e-04
Identities = 27/86 (31%), Positives = 37/86 (42%), Gaps = 13/86 (15%)
Frame = +1
Query: 244 RRPKRRDAHVEIVCYKCGEKGHKSNVCGRD----DRKCFRCGQKGHSLAECK--RGDIV- 296
R +D EI CY C GH V D + C++CGQ GH+ C R +I
Sbjct: 307 RNDYSQDDLKEIQCYVCKRLGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEITS 486
Query: 297 ------CYNCNGEGHISSQCPEPKKT 316
C+ C EGH + +C K+
Sbjct: 487 GATPSSCFKCGEEGHFARECTSSIKS 564
Score = 42.0 bits (97), Expect = 5e-04
Identities = 24/76 (31%), Positives = 32/76 (41%), Gaps = 11/76 (14%)
Frame = +1
Query: 256 VCYKCGEKGHKSNVC----GRDDRK---CFRCGQKGH----SLAECKRGDIVCYNCNGEG 304
+C KCG GH C +DD K C+ C + GH + + G+I CY C G
Sbjct: 262 ICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLGHLCCVNTDDATPGEISCYKCGQLG 441
Query: 305 HISSQCPEPKKTRTGG 320
H C + T G
Sbjct: 442 HTGLACSRLRDEITSG 489
>TC218711 similar to UP|Q90Z60 (Q90Z60) Rev-Erb beta (Fragment), partial (6%)
Length = 1204
Score = 49.7 bits (117), Expect = 2e-06
Identities = 30/97 (30%), Positives = 40/97 (40%), Gaps = 16/97 (16%)
Frame = -3
Query: 232 PADKGKQKMGDDRR----PKRRDAHVEIVCYKCGEKGHKSNVCGR------DDRKCFRCG 281
PA K ++ D R P + + C C + GH+ C R D+ CF CG
Sbjct: 608 PAGKTLVQITDTLRVTKSPFKHHGESSLRCRACRQPGHRFQQCQRLKCLSMDEEVCFFCG 429
Query: 282 QKGHSLAECKRGD------IVCYNCNGEGHISSQCPE 312
+ GHSL +C C C G GH S CP+
Sbjct: 428 EIGHSLGKCDVSQAGGGRFAKCLLCYGHGHFSYNCPQ 318
>TC227589
Length = 547
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 2/64 (3%)
Frame = +2
Query: 257 CYKCGEKGHKSNVCGRDDRK--CFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPK 314
C+ CGE GH + C RK C+ CG GH+ +C + C+ C GH + C E
Sbjct: 47 CFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQCTKAQ-DCFICKKGGHRAKDCLEKH 223
Query: 315 KTRT 318
+R+
Sbjct: 224 TSRS 235
Score = 40.4 bits (93), Expect = 0.001
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Frame = +2
Query: 256 VCYKCGEKGHKSNVCGRD-------DRKCFRCGQKGH----SLAECKRGDIVCYNCNGEG 304
+C KCG GH C D + +C+ C + GH + + G+I CY C G
Sbjct: 248 ICLKCGNSGHDMFSCRNDYSPDDLKEIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLG 427
Query: 305 HISSQC 310
H C
Sbjct: 428 HTGLAC 445
Score = 40.0 bits (92), Expect = 0.002
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Frame = +2
Query: 254 EIVCYKCGEKGHKSNVCGRD----DRKCFRCGQKGHS-LAECKRGDIV--------CYNC 300
EI CY C GH V D + C++CGQ GH+ LA K D + C C
Sbjct: 323 EIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSKLPDEITSAATPSSCCKC 502
Query: 301 NGEGHISSQCPEP 313
GH + +C P
Sbjct: 503 GEAGHFAQECTSP 541
>TC206180 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (42%)
Length = 655
Score = 45.8 bits (107), Expect = 3e-05
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +3
Query: 258 YKCGEKGHKSNVCGR------DDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCP 311
+ CG+ GH++ C D R C C ++GH AEC + C NC GH++ CP
Sbjct: 3 HTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAEC-TNEKACNNCRKTGHLARDCP 179
Score = 45.8 bits (107), Expect = 3e-05
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 22/85 (25%)
Frame = +3
Query: 249 RDAHVEIVCYKCGEKGHKSNVC----------------------GRDDRKCFRCGQKGHS 286
RD + +C C GH + C G D C C Q GH
Sbjct: 168 RDCPNDPICNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGGYRDVVCRNCQQLGHM 347
Query: 287 LAECKRGDIVCYNCNGEGHISSQCP 311
+C ++C+NC G GH++ +CP
Sbjct: 348 SRDCMGPLMICHNCGGRGHLAYECP 422
Score = 45.4 bits (106), Expect = 4e-05
Identities = 19/57 (33%), Positives = 32/57 (55%)
Frame = +3
Query: 256 VCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPE 312
+C C ++GH + C +++ C C + GH +C D +C CN GH++ QCP+
Sbjct: 75 LCNNCYKQGHIAAEC-TNEKACNNCRKTGHLARDCPN-DPICNLCNVSGHVARQCPK 239
Score = 36.6 bits (83), Expect = 0.019
Identities = 22/82 (26%), Positives = 28/82 (33%), Gaps = 22/82 (26%)
Frame = +3
Query: 254 EIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRG-------------------- 293
E C C + GH + C D C C GH +C +
Sbjct: 126 EKACNNCRKTGHLARDCPNDPI-CNLCNVSGHVARQCPKANVLGDXXGGGGGARGGGGGG 302
Query: 294 --DIVCYNCNGEGHISSQCPEP 313
D+VC NC GH+S C P
Sbjct: 303 YRDVVCRNCQQLGHMSRDCMGP 368
Score = 36.2 bits (82), Expect = 0.025
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 254 EIVCYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRG 293
++VC C + GH S C C CG +GH EC G
Sbjct: 309 DVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSG 428
Score = 35.4 bits (80), Expect = 0.043
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = +3
Query: 280 CGQKGHSLAECKR-----GDI-VCYNCNGEGHISSQCPEPK 314
CG+ GH EC GD+ +C NC +GHI+++C K
Sbjct: 9 CGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEK 131
>CO980191
Length = 802
Score = 45.4 bits (106), Expect = 4e-05
Identities = 23/48 (47%), Positives = 30/48 (61%)
Frame = +1
Query: 106 VVTWAMFKKEFLGRYFPEDVRGKKKIEFLELKQGDMSVTEYAAKFVEL 153
V+T +FK+ FL ++ ED+ KK EFLELK G+M V Y F EL
Sbjct: 361 VIT*EVFKEIFLEKHLHEDI*NHKKTEFLELKHGNMIVANYLVNFDEL 504
>TC225188 similar to UP|Q9FYB7 (Q9FYB7) Splicing factor-like protein, partial
(62%)
Length = 1131
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 276 KCFRCGQKGHSLAECKRGD--IVCYNCNGEGHISSQCP-EPKKTRTGGK 321
+CF CG GH +CK GD CY C GHI C PKK G+
Sbjct: 361 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSQRGR 507
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 257 CYKCGEKGHKSNVCGRDD--RKCFRCGQKGHSLAECK 291
C+ CG GH + C D KC+RCG++GH CK
Sbjct: 364 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCK 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQK 283
CY+CGE+GH C +K + G++
Sbjct: 430 CYRCGERGHIEKNCKNSPKKLSQRGRR 510
>TC205022 similar to UP|Q9FYA7 (Q9FYA7) Splicing factor RSZ33, partial (69%)
Length = 1623
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/46 (45%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Frame = +2
Query: 276 KCFRCGQKGHSLAECKRGD--IVCYNCNGEGHISSQCP-EPKKTRT 318
+CF CG GH +CK GD CY C GHI C PKK T
Sbjct: 311 RCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLST 448
Score = 40.4 bits (93), Expect = 0.001
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 257 CYKCGEKGHKSNVCGRDD--RKCFRCGQKGHSLAECK 291
C+ CG GH + C D KC+RCG++GH CK
Sbjct: 314 CFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCK 424
Score = 28.1 bits (61), Expect = 6.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 257 CYKCGEKGHKSNVCGRDDRK 276
CY+CGE+GH C +K
Sbjct: 380 CYRCGERGHIERNCKNSPKK 439
>TC216231 similar to UP|Q41188 (Q41188) Glycine-rich protein 2 (GRP2)
(AT4g38680/F20M13_240), partial (42%)
Length = 891
Score = 41.6 bits (96), Expect = 6e-04
Identities = 21/55 (38%), Positives = 24/55 (43%)
Frame = +3
Query: 257 CYKCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCP 311
CYKCGE GH + C + R G G G CYNC GH + CP
Sbjct: 231 CYKCGETGHIARDCSQGGGGGGRYGGGGG-------GGGSCYNCGESGHFARDCP 374
>TC219583 weakly similar to UP|GRP2_NICSY (P27484) Glycine-rich protein 2,
partial (45%)
Length = 995
Score = 39.3 bits (90), Expect = 0.003
Identities = 23/66 (34%), Positives = 28/66 (41%), Gaps = 7/66 (10%)
Frame = +2
Query: 257 CYKCGEKGHKSNVC-------GRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQ 309
CY CG GH + C G DD + R G G G C+NC EGH + +
Sbjct: 425 CYNCGRIGHLARDCYHGQGGGGGDDGRNRRRGGGGG-------GGGGCFNCGEEGHFARE 583
Query: 310 CPEPKK 315
CP K
Sbjct: 584 CPNVGK 601
>BE804023
Length = 407
Score = 35.8 bits (81), Expect = 0.033
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Frame = -3
Query: 257 CYKCGEKGHKSNVC-GRDDRKCFRCGQKGHSLAECKRGDIVCYNCNGEGHISSQCPEPKK 315
C C +KGH C R D KC +C Q GH + ++C N N + +++ +PK+
Sbjct: 219 C*HCRKKGHPPFRC*KRPDAKCSQCNQMGHEV-------VICKNRNQSHNEAAKVVDPKE 61
>TC230490 similar to UP|Q8LEE4 (Q8LEE4) Zinc finger protein, partial (19%)
Length = 574
Score = 34.3 bits (77), Expect = 0.096
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = +1
Query: 253 VEIVCYKCGEKGHKSNVC-----GRDDRK--CFRCGQKGHSLAECKR 292
V+ C CG +GH+ + C DR+ C CG KGH+ C++
Sbjct: 115 VKFYCQNCGREGHRRHYCPELNDSLVDRRFTCRLCGGKGHNRRTCRK 255
>TC226200 similar to UP|O81126 (O81126) 9G8-like SR protein (RSZp22 splicing
factor), partial (89%)
Length = 936
Score = 34.3 bits (77), Expect = 0.096
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Frame = +2
Query: 201 RIYQEDTKAHYKIMSERRGKGQQNRPKPYSAPADKGKQKMGDDRRPK--RRDAHVEIVCY 258
R+ + D + +++ R RP Y+ ++ D R + VE+
Sbjct: 104 RVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHN 283
Query: 259 KCGEKGHKSNVCGRDDRKCFRCGQKGHSLAECK 291
G G + G D KC+ CG+ GH EC+
Sbjct: 284 SRGGGGGRGGRSGGSDLKCYECGEPGHFARECR 382
>TC206176 weakly similar to UP|Q8LPA7 (Q8LPA7) Cold shock protein-1, partial
(77%)
Length = 883
Score = 33.1 bits (74), Expect = 0.21
Identities = 22/69 (31%), Positives = 26/69 (36%), Gaps = 14/69 (20%)
Frame = +3
Query: 257 CYKCGEKGHKSNVC---GRDDRKCFRCGQKGHSLAECKRGDIV-----------CYNCNG 302
CY CGE GH + C G DR + G G G V CY+C
Sbjct: 435 CYNCGESGHLARDCSGGGGGDR--YGGGGGGGRYGGGGGGRYVGGGGGGGGGGSCYSCGE 608
Query: 303 EGHISSQCP 311
GH + CP
Sbjct: 609 SGHFARDCP 635
>TC206179 similar to UP|Q8LF59 (Q8LF59) DNA-binding protein, partial (16%)
Length = 407
Score = 33.1 bits (74), Expect = 0.21
Identities = 24/82 (29%), Positives = 33/82 (39%), Gaps = 7/82 (8%)
Frame = +3
Query: 235 KGKQKMGDDRRPKRRDAHVEIVCYKCGEKGHKSNVCGRDDRKCF-------RCGQKGHSL 287
K K KM D R + R + ++ RD R+ F C + GH
Sbjct: 165 KKKLKMSSDSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLGKNCKRPGHYA 344
Query: 288 AECKRGDIVCYNCNGEGHISSQ 309
EC I C+NC GHI+S+
Sbjct: 345 RECPNVAI-CHNCGLPGHIASE 407
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,857,898
Number of Sequences: 63676
Number of extensions: 248961
Number of successful extensions: 1260
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of query: 382
length of database: 12,639,632
effective HSP length: 99
effective length of query: 283
effective length of database: 6,335,708
effective search space: 1793005364
effective search space used: 1793005364
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Medicago: description of AC147497.3