TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.9 - phase: 0 
         (125 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC209480 similar to UP|Q8VXV0 (Q8VXV0) AT3g52570/F22O6_50, parti...    29  0.63
TC218584                                                               28  1.1
TC225932                                                               27  3.1
TC219314 weakly similar to UP|Q7XUE7 (Q7XUE7) OJ991113_30.24 pro...    26  4.1
BU548830                                                               26  4.1
TC219305 weakly similar to UP|Q9LSE7 (Q9LSE7) Emb|CAB45497.1 (AT...    26  4.1
BE822723                                                               25  7.0
TC217095 similar to PDB|1I24_A.0|33357043|1I24_A Chain A, High R...    25  9.1
CO985661                                                               25  9.1

>TC209480 similar to UP|Q8VXV0 (Q8VXV0) AT3g52570/F22O6_50, partial (38%)
          Length = 1005

 Score = 28.9 bits (63), Expect = 0.63
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 27  GKMNTRRGSTEVHEFDGKFRKAPARFKVTS-VIGHVFSVDFPGKYQDWAATD 77
           G++N    + EV       +  P++F     ++GH+  + +P    DW  T+
Sbjct: 306 GEVNQENSNDEVRNVLATLQSLPSQFSSRKWLVGHLMGLGYPKALSDWIGTN 461


>TC218584 
          Length = 637

 Score = 28.1 bits (61), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = +2

Query: 95  LVDVVIWYCGWIVTVKEKIYVLRVIFVSL 123
           LV +V W C  ++T+   IYV   IF SL
Sbjct: 539 LVQIVWWCCSKVITL*SHIYVTTGIFFSL 625


>TC225932 
          Length = 2244

 Score = 26.6 bits (57), Expect = 3.1
 Identities = 12/38 (31%), Positives = 18/38 (46%), Gaps = 3/38 (7%)
 Frame = +2

Query: 89  NESNPKLVDVVIW---YCGWIVTVKEKIYVLRVIFVSL 123
           N  NP L+ +V+W      W  T++ +IY       SL
Sbjct: 812 NNLNPNLLSIVVWNICLICWFTTIRLRIYCTMKYLTSL 925


>TC219314 weakly similar to UP|Q7XUE7 (Q7XUE7) OJ991113_30.24 protein,
           partial (5%)
          Length = 898

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 86  VIKNESNPKLVDVVIW--YCGWIVTVKEKIYVLR 117
           +++   N K   + +W   CGWI  ++  IY LR
Sbjct: 409 LLQYNMNYKTRQIQLWGIICGWIFRIRNSIYKLR 308


>BU548830 
          Length = 712

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 86  VIKNESNPKLVDVVIW--YCGWIVTVKEKIYVLR 117
           +++   N K   + +W   CGWI  ++  IY LR
Sbjct: 430 LLQYNMNYKTRQIQLWGIICGWIFRIRNSIYKLR 531


>TC219305 weakly similar to UP|Q9LSE7 (Q9LSE7) Emb|CAB45497.1
           (AT3g25290/MJL12_25), partial (39%)
          Length = 627

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 31  TRRGSTEVHEFDGKFRKAPARFKVTSVIGHVFSVDFPGKYQDWAATDP 78
           T R S E+    G+F+ +      + +IG   S  FP +   W  T P
Sbjct: 219 TMRKSVELQTKRGRFQYSDEHCIESPLIGFQVSCQFPSQQPQWRKTIP 76


>BE822723 
          Length = 552

 Score = 25.4 bits (54), Expect = 7.0
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 87  IKNESNPKLVDVVIWYCGWIVT 108
           + ++  P L  +++W+C W+ T
Sbjct: 197 VAHDHRPLLYMLLVWHCAWLAT 262


>TC217095 similar to PDB|1I24_A.0|33357043|1I24_A Chain A, High Resolution
           Crystal Structure Of The Wild-Type Protein Sqd1, With
           Nad And Udp-Glucose. {Arabidopsis thaliana;} , partial
           (84%)
          Length = 1346

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 8/52 (15%)
 Frame = +3

Query: 21  ATVLSHGKM-NTRRGSTEVHE-------FDGKFRKAPARFKVTSVIGHVFSV 64
           AT L+ G +   R   T +HE       +DG F  A  RF V + +GH  +V
Sbjct: 465 ATDLNQGVVYGVRTDETAMHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTV 620


>CO985661 
          Length = 553

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 11/23 (47%), Positives = 15/23 (64%)
 Frame = -3

Query: 79  LDLFQAQVIKNESNPKLVDVVIW 101
           + L  AQV++ +SN K   VVIW
Sbjct: 353 ISLDNAQVVRXDSNAKRNTVVIW 285


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,076,652
Number of Sequences: 63676
Number of extensions: 55948
Number of successful extensions: 271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of query: 125
length of database: 12,639,632
effective HSP length: 86
effective length of query: 39
effective length of database: 7,163,496
effective search space: 279376344
effective search space used: 279376344
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)