TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147484.3 - phase: 0 /pseudo
         (526 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216458 similar to UP|Q9WUG9 (Q9WUG9) ARL-6 interacting protein...    32  0.69
TC208690 similar to GB|AAD49977.1|5734712|F24J5 ESTs gb|T41781 a...    30  2.0
TC203867 similar to UP|FK22_ARATH (Q38936) FK506-binding protein...    30  3.4
TC208784 similar to UP|Q9FYC8 (Q9FYC8) Non-phototropic hypocotyl...    29  5.9
BI700836                                                               29  5.9
CO984054                                                               25  6.6
TC226391 homologue to GB|AAN31107.1|23506191|AY149953 At5g61670/...    28  7.7

>TC216458 similar to UP|Q9WUG9 (Q9WUG9) ARL-6 interacting protein-5
           (Fragment), partial (14%)
          Length = 1207

 Score = 32.0 bits (71), Expect = 0.69
 Identities = 21/78 (26%), Positives = 38/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 68  IPQFLHSIVTFHPHFLVSPLVAALSSFD-----DEPIAEQLVHLILNLSASSDPSVCREF 122
           +P+F++ ++ F PHFL  P + + +  +         AE L+  +  +  SS P    EF
Sbjct: 75  LPRFVNLLIQFIPHFLFQPNLFSDNQREIIMDWGNVTAEDLIDALREVDWSSPPRPLSEF 254

Query: 123 VARVSDRVSSGALGWSSR 140
            +R +  V   +  W+SR
Sbjct: 255 FSRFT--VPRSSSKWNSR 302


>TC208690 similar to GB|AAD49977.1|5734712|F24J5 ESTs gb|T41781 and
           gb|AA586096 come from this gene. {Arabidopsis thaliana;}
           , partial (70%)
          Length = 585

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 145 LHCLGVLLNCEKEDDLHVHIKDVYSLISVLV 175
           LH +  ++NC     LH H+ +++SL+ V++
Sbjct: 219 LHDVNRIINCHSRYHLHQHLHNIFSLVEVVI 127


>TC203867 similar to UP|FK22_ARATH (Q38936) FK506-binding protein 2-2
           precursor  (Peptidyl-prolyl cis-trans isomerase)
           (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-2) , partial
           (12%)
          Length = 938

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +3

Query: 455 KEAYAYSHDENSTHISKLELRSGILDICRTHLLP 488
           KE  A  H E S+H S L LR GI   C   LLP
Sbjct: 48  KEFPALFHHERSSHSSLLPLRFGIRYCCSLPLLP 149


>TC208784 similar to UP|Q9FYC8 (Q9FYC8) Non-phototropic hypocotyl 3-like
           protein, partial (16%)
          Length = 1068

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 30/109 (27%), Positives = 46/109 (41%), Gaps = 14/109 (12%)
 Frame = -3

Query: 19  SQGHRSSLN---LQTNQGG--------TICLVCFSNLISNPSSPTIHVSYALSQLSRSLS 67
           S G  +SL+   L TN+G         T+ + CF  L S+ SSPT+ +  ++S      S
Sbjct: 472 SDGRGTSLHPIFLATNRGELREL*DFVTLFISCFILLNSSSSSPTLELILSISTFKT*FS 293

Query: 68  IPQFLH-SIVTFHPHFLVSPLV--AALSSFDDEPIAEQLVHLILNLSAS 113
                H S+ T  P  L   ++   A  +         LV+ +L  S S
Sbjct: 292 RTTVTHPSLCTISPAVLPRAVIGTGAAGAISPSNALRHLVNAVLKCSCS 146


>BI700836 
          Length = 420

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 336 LFEILRLSVPFHPVQYETLKLIYECISECP 365
           L+ +L L +PFH   + + KL   C  +CP
Sbjct: 190 LYPMLFLPIPFHSTHHSSQKLFLFC*KDCP 279


>CO984054 
          Length = 817

 Score = 25.4 bits (54), Expect(2) = 6.6
 Identities = 19/93 (20%), Positives = 41/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 21  GHRSSLNLQTNQGGTICLVCFSNLISNPSSPTIHVSYALSQLSRSLSIPQFLHSIVTFHP 80
           GH    + +  +  ++C +  S   ++  S    ++    +++ +   P FLHS      
Sbjct: 297 GHHLCRSGKEARPASVCFLILSRSATSDCSSYSSITLCFRKITGAS*SPDFLHSFAKPCS 476

Query: 81  HFLVSPL-VAALSSFDDEPIAEQLVHLILNLSA 112
            +L  P  V   S+   +P++  L  ++LN S+
Sbjct: 477 IYLQLPQEVRKKSTTTKDPVSLALSRILLNSSS 575



 Score = 21.6 bits (44), Expect(2) = 6.6
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = +1

Query: 144 SLHCLGVLLNCEKEDDLHVHIKDVYSLISVLVT 176
           +LH   +LL+ +++ D H+H  ++  ++  L++
Sbjct: 565 TLHQW*ILLHIQRDRDHHLHQTNLLDILQQLLS 663


>TC226391 homologue to GB|AAN31107.1|23506191|AY149953 At5g61670/k11j9_190
           {Arabidopsis thaliana;} , partial (25%)
          Length = 595

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/79 (29%), Positives = 34/79 (42%), Gaps = 11/79 (13%)
 Frame = +3

Query: 16  WCCSQGHRSSLNLQTNQGGTICLVCFSNLISNPSSPTIHVSYAL-----------SQLSR 64
           W  S G  ++ +     GGT  +     +   P +PT+ +   L           S LS 
Sbjct: 129 WVDSAGSLTTQSNPVGVGGTTPITGPDGV*WPPRNPTLLLHPLLTPTKPPLLGPFSILSL 308

Query: 65  SLSIPQFLHSIVTFHPHFL 83
           SLS+  FLHS + F+P  L
Sbjct: 309 SLSLFSFLHSSILFYPQIL 365


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,386,704
Number of Sequences: 63676
Number of extensions: 387057
Number of successful extensions: 2182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2182
length of query: 526
length of database: 12,639,632
effective HSP length: 102
effective length of query: 424
effective length of database: 6,144,680
effective search space: 2605344320
effective search space used: 2605344320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)