TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147483.13 - phase: 0 
         (208 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216808                                                               60  3e-15
TC222199                                                               62  2e-10
BE611176                                                               45  2e-05
TC225552 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)          30  0.78
TC223083                                                               27  5.1
TC234236 similar to UP|Q9LW21 (Q9LW21) Arabidopsis thaliana geno...    27  5.1

>TC216808 
          Length = 1144

 Score = 60.1 bits (144), Expect(2) = 3e-15
 Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
 Frame = +2

Query: 25  KKTKSYKFKEVDLVSLRELA--LKVKNQTGFRLQYGGLLTILRTNVEEKLVHTLVQFYDP 82
           K+    K K +++ SL EL   +    +  FR  YG +  + R  V  + + +L Q+YD 
Sbjct: 146 KRFYQVKIKSLEVTSLGELGQLMGQLQR*AFRKAYGKIWDLARVEVSMEPIASLSQYYDQ 325

Query: 83  SFRCFTFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVVAKDLYLKTSDVSNHL 142
             RCFTF DFQ+VPT++    +       + P+   G   +   VAK + +   +++   
Sbjct: 326 PLRCFTFEDFQLVPTVKELEEIRGCQLGGRKPYLFSGFYPSTTRVAKVVKISAQELNRVK 505

Query: 143 TTKSHIRGFTSKYLLEQA 160
             ++ + G   K L E+A
Sbjct: 506 QNRNGVVGVPRKCLEERA 559



 Score = 38.1 bits (87), Expect(2) = 3e-15
 Identities = 21/43 (48%), Positives = 30/43 (68%), Gaps = 5/43 (11%)
 Frame = +3

Query: 169 ILALLIYGLILFPSLDNFVDMNAIKIF----HSK-NPVPTLLA 206
           ILALLI+G++LFP+++  VD+ AI  F    H K +PV  +LA
Sbjct: 603 ILALLIFGVVLFPNMEGLVDLAAIDAFLAFHHGKESPVVAILA 731


>TC222199 
          Length = 691

 Score = 62.0 bits (149), Expect = 2e-10
 Identities = 48/132 (36%), Positives = 68/132 (51%), Gaps = 15/132 (11%)
 Frame = +2

Query: 91  DFQVVPTLEAYSHLLDSPTAEKTPFTG----PGTSLTPLVVAKDLYLKTSDVSNHLTTKS 146
           DFQ+VPT+E +  +L  P  E+ P+      P  S  P +V KD       V     T++
Sbjct: 5   DFQLVPTIEEFEEILGCPLGERKPYLSSGCLPSLSRIPTMV-KDSARGLDRVKQ---TRN 172

Query: 147 HIRGFTSKYLLEQATCQD------ALEAILALLIYGLILFPSLDNFVDMNAIKIF----H 196
            I G   KYL ++A              +LALLI+G++LFP++D  VD+ AI  F    H
Sbjct: 173 GIAGLPRKYLEDKARGIANQGDWVPFMDVLALLIFGVVLFPNVDGLVDLAAIDAFLAYHH 352

Query: 197 SK-NPVPTLLAD 207
           SK +PV  +LAD
Sbjct: 353 SKESPVVAVLAD 388


>BE611176 
          Length = 424

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 28/97 (28%), Positives = 43/97 (43%), Gaps = 2/97 (2%)
 Frame = -2

Query: 25  KKTKSYKFKEVDLVSLRELA--LKVKNQTGFRLQYGGLLTILRTNVEEKLVHTLVQFYDP 82
           K+    K K +D+ S++EL   +       FR  Y  +L +    +  + + +L Q+YD 
Sbjct: 360 KRFYQVKIKGLDITSIKELGRLMGPLQMQAFRKAYEKILDLTIAEISTEAIASLTQYYD* 181

Query: 83  SFRCFTFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPG 119
             RCFTF DFQ+   L+      D    E      PG
Sbjct: 180 PLRCFTFGDFQLDRPLKNLRRF*DVLLGEGNRIFSPG 70


>TC225552 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)
          Length = 1660

 Score = 30.0 bits (66), Expect = 0.78
 Identities = 21/62 (33%), Positives = 25/62 (39%)
 Frame = +2

Query: 82  PSFRCFTFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTPLVVAKDLYLKTSDVSNH 141
           P+F   T   F V P     S L  S T    PFT   +SL      + L L TS    H
Sbjct: 116 PTFALRTISSFSVKPVTTTRSSLTTSSTTTLLPFTSTNSSL-----PRTLKLNTSSPHPH 280

Query: 142 LT 143
           L+
Sbjct: 281 LS 286


>TC223083 
          Length = 243

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  FTFPDFQVVPTLEAYSHLLDSPTAEKTPFTGPGTSLTP 124
           F FP  +V+  ++  S LLDSPT   TPF    T   P
Sbjct: 72  FLFPS*RVLVVVD--SVLLDSPTTTTTPFAPTCTESNP 179


>TC234236 similar to UP|Q9LW21 (Q9LW21) Arabidopsis thaliana genomic DNA,
           chromosome 3, P1 clone: MDJ14, partial (4%)
          Length = 586

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 8   IHRRIGQIKNFVNITGMKKTKSYKFKEVDLVSLRELALK 46
           I R   QIKN  NIT  K   +YK     ++  R+L  K
Sbjct: 439 IMRAETQIKNVTNITNEKNKNAYKHSTAYMLGRRDLESK 323


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,613,942
Number of Sequences: 63676
Number of extensions: 106094
Number of successful extensions: 514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of query: 208
length of database: 12,639,632
effective HSP length: 93
effective length of query: 115
effective length of database: 6,717,764
effective search space: 772542860
effective search space used: 772542860
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)