TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147482.6 + phase: 2 /pseudo
         (675 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC210125 homologue to UP|Q9LD60 (Q9LD60) Spliceosomal-like prote...    92  2e-32
BE806527                                                               31  1.6
BQ473361 similar to PIR|T49911|T49 anthranilate phosphoribosyltr...    29  7.8

>TC210125 homologue to UP|Q9LD60 (Q9LD60) Spliceosomal-like protein, partial
           (8%)
          Length = 651

 Score = 91.7 bits (226), Expect(2) = 2e-32
 Identities = 45/58 (77%), Positives = 47/58 (80%)
 Frame = +2

Query: 583 SAF*MEQLWEVLEHYMLLLHEMMLISSLIWRCI*GRIIHLCVEEIIWLIDPPIFLLSL 640
           SA  +EQLWEVL HYM LLHEMMLIS LIWRCI*GRI HLCVEE  W ID PIFLL +
Sbjct: 2   SALYLEQLWEVLGHYMPLLHEMMLISFLIWRCI*GRITHLCVEETTWHIDLPIFLLRM 175



 Score = 66.2 bits (160), Expect(2) = 2e-32
 Identities = 31/35 (88%), Positives = 33/35 (93%)
 Frame = +1

Query: 640 LCEQFPTLPMDLQRKIADELDRTRGEILKKLEEYK 674
           LCEQ+PTLPMDLQRKIADELDRT GEILKKLEE +
Sbjct: 190 LCEQYPTLPMDLQRKIADELDRTPGEILKKLEEVR 294


>BE806527 
          Length = 419

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 13/31 (41%), Positives = 21/31 (66%)
 Frame = +2

Query: 590 LWEVLEHYMLLLHEMMLISSLIWRCI*GRII 620
           LWE L + +LLLH ++L+ + +W  I* R +
Sbjct: 2   LWETLLNPLLLLHLLLLLHTFVWCSI*SRSV 94


>BQ473361 similar to PIR|T49911|T49 anthranilate
           phosphoribosyltransferase-like protein - Arabidopsis
           thaliana, partial (18%)
          Length = 427

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 184 HCCKREACYALPVKSPLAWL 203
           HCC    CY+LP   P  WL
Sbjct: 363 HCCNSSLCYSLPSCVPSNWL 422


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.360    0.160    0.619 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,248,364
Number of Sequences: 63676
Number of extensions: 673164
Number of successful extensions: 7149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3947
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 3084
Number of HSP's gapped (non-prelim): 4403
length of query: 675
length of database: 12,639,632
effective HSP length: 104
effective length of query: 571
effective length of database: 6,017,328
effective search space: 3435894288
effective search space used: 3435894288
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 62 (28.5 bits)