BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147471.11 - phase: 0 /pseudo
(1453 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 120 4e-27
BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, pa... 109 4e-23
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 86 3e-17
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 84 5e-16
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 84 5e-16
BM307983 74 4e-13
BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis v... 72 1e-12
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 69 1e-11
BU545438 68 3e-11
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 67 6e-11
TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotei... 61 6e-09
BU548243 59 2e-08
BG840035 weakly similar to GP|9294121|dbj copia-like retrotransp... 57 8e-08
BU764568 38 1e-07
TC234456 56 1e-07
CO981879 42 2e-07
TC234402 weakly similar to GB|AAR24647.1|38603804|BT010869 At2g2... 52 2e-07
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 54 3e-07
TC207859 53 1e-06
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 52 1e-06
>CD412284 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (13%)
Length = 539
Score = 120 bits (301), Expect = 4e-27
Identities = 54/82 (65%), Positives = 69/82 (83%)
Frame = -2
Query: 1372 PMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTK 1431
PM+LYCDNK AINI+ NPVQHDRTKH+E+++HFIKEK+D+GLIC P+V S +AD+LTK
Sbjct: 448 PMKLYCDNKAAINISQNPVQHDRTKHVEIDRHFIKEKVDTGLICMPFVPSSQQVADILTK 269
Query: 1432 RLNNNNFEKFVSKLGMIDIHSP 1453
L +NFE VSKL M+DI++P
Sbjct: 268 GLFRSNFEFLVSKLVMLDIYAP 203
>BI969608 similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (19%)
Length = 454
Score = 109 bits (272), Expect(2) = 4e-23
Identities = 49/82 (59%), Positives = 64/82 (77%)
Frame = -2
Query: 1372 PMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTK 1431
PM+LYCDNK AINI+ NPVQH RTKH+E+++ FIKEK+D+G IC P++ +AD+ TK
Sbjct: 300 PMKLYCDNKAAINISQNPVQHGRTKHVEIDRPFIKEKVDAGQICMPFIPFSQQVADIFTK 121
Query: 1432 RLNNNNFEKFVSKLGMIDIHSP 1453
L NFE FVSKL M+DI++P
Sbjct: 120 GLFRPNFEFFVSKLDMLDIYAP 55
Score = 18.9 bits (37), Expect(2) = 4e-23
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 1340 C*SRVQGNGTGDM*ITMA*KHLERL 1364
C VQGNG +* +A*K R+
Sbjct: 394 CQG*VQGNGPRCL*DFIA*KDFRRI 320
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 85.9 bits (211), Expect(2) = 3e-17
Identities = 40/81 (49%), Positives = 56/81 (68%)
Frame = +2
Query: 1373 MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKR 1432
M+LYCDN+ A++IA NPV H+RTKH+E++ HFI+EKL S I T ++ S D D+LTK
Sbjct: 248 MKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEIVTEFIGSNDQPVDILTKS 427
Query: 1433 LNNNNFEKFVSKLGMIDIHSP 1453
L + SKLG D+++P
Sbjct: 428 LRGPKIQIVCSKLGAYDLYAP 490
Score = 22.3 bits (46), Expect(2) = 3e-17
Identities = 22/68 (32%), Positives = 35/68 (51%)
Frame = +1
Query: 1298 IH*CGLCKVNCG*EIDYKILHFPG*EPCDLEK*KTKCGIQI*C*SRVQGNGTGDM*ITMA 1357
I *C L ++ G*E+ ++L + C LEK +T +*C S + +G G +* +
Sbjct: 25 IL*C*LGWLSHG*EVYIRLLCLHWRKSCFLEKQETDGCSSV*CRS*ISIDGYGYL*THVD 204
Query: 1358 *KHLERLE 1365
* R+E
Sbjct: 205 *TISARIE 228
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 84.0 bits (206), Expect = 5e-16
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +1
Query: 1373 MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKR 1432
M LYCDN AINI+ NPVQH RTKH+++ H+I++ +D +I +V +++ +AD+ TK
Sbjct: 4489 MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKA 4668
Query: 1433 LNNNNFEKFVSKLGM 1447
L+ N FEK KLG+
Sbjct: 4669 LDANQFEKLRGKLGI 4713
Score = 45.1 bits (105), Expect(2) = 6e-07
Identities = 37/158 (23%), Positives = 73/158 (45%), Gaps = 6/158 (3%)
Frame = +1
Query: 427 CLITLVFFRTKSRGGRLKLLENGMVFTIWITKTQAQSYLATTFFLESIKTNREKVLLYHY 486
CL+T +G R K +N ++T Q SY +T F + ++V ++H
Sbjct: 1942 CLVTNEKSEVLMKGSRSK--DNCYLWT-----PQETSYSSTCLF-----SKEDEVKIWHQ 2085
Query: 487 RVGDPSFRVIKQLFPLF----FKTLDVESFQ-CELCELAKHKRVTFS-VSNKMSTFPFYL 540
R G R +K++ L +E + C C++ K +++ + ++ ++ L
Sbjct: 2086 RFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLEL 2265
Query: 541 VHTNVWGPSNVPNISGARWFVTFIDDCTWVTWVYFLHD 578
+H ++ GP V ++ G R+ +DD + TWV F+ +
Sbjct: 2266 LHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 2379
Score = 28.1 bits (61), Expect(2) = 6e-07
Identities = 20/43 (46%), Positives = 23/43 (52%)
Frame = +3
Query: 595 QRLF*SQFKFILSKRRHNS*VLLC*NTPTKWDC*EEKWSFVGS 637
QR+ Q IL RH+S*VL T TKW *+EK F S
Sbjct: 2472 QRV*KQQVY*ILHI*RHHS*VLCSHYTTTKWHS*KEKQDFARS 2600
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 84.0 bits (206), Expect = 5e-16
Identities = 36/75 (48%), Positives = 53/75 (70%)
Frame = +1
Query: 1373 MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKR 1432
M LYCDN AINI+ NPVQH RTKH+++ H+I++ +D +I +V +++ +AD+ TK
Sbjct: 4486 MTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKA 4665
Query: 1433 LNNNNFEKFVSKLGM 1447
L+ N FEK KLG+
Sbjct: 4666 LDANQFEKLRGKLGI 4710
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 36/158 (22%), Positives = 73/158 (45%), Gaps = 6/158 (3%)
Frame = +1
Query: 427 CLITLVFFRTKSRGGRLKLLENGMVFTIWITKTQAQSYLATTFFLESIKTNREKVLLYHY 486
CL+T +G R K +N ++T Q SY +T + + ++V ++H
Sbjct: 1939 CLVTNEKSEVLMKGSRSK--DNCYLWT-----PQETSYSSTC-----LSSKEDEVRIWHQ 2082
Query: 487 RVGDPSFRVIKQLFPLF----FKTLDVESFQ-CELCELAKHKRVTFS-VSNKMSTFPFYL 540
R G R +K++ L +E + C C++ K +++ + ++ ++ L
Sbjct: 2083 RFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLEL 2262
Query: 541 VHTNVWGPSNVPNISGARWFVTFIDDCTWVTWVYFLHD 578
+H ++ GP V ++ G R+ +DD + TWV F+ +
Sbjct: 2263 LHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIRE 2376
Score = 34.7 bits (78), Expect = 0.31
Identities = 28/97 (28%), Positives = 42/97 (42%)
Frame = +3
Query: 1003 QGKIGSQRIHSDLWSRLLRDICPYCKNEYCQGDIIFSS*LQLELAPI*CEKCLPSWRT*R 1062
QG+ G R+HSD RL D CP C Q S Q++ P CE+ + W
Sbjct: 3384 QGQTGCSRLHSD*RCRL**DFCPSC*T*VHQIITWCSLYPQIQAVPDGCEERISEWIPE* 3563
Query: 1063 RDLHECAPWIR*TYYYQHRVQVEKSFIWAKAVTTCMV 1099
R L A I + +Q ++ +W +A + +V
Sbjct: 3564 RSLCGAAKGICRPDSSRSCIQAQEGSLWIEASSKSLV 3674
Score = 31.2 bits (69), Expect(2) = 2e-07
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +3
Query: 595 QRLF*SQFKFILSKRRHNS*VLLC*NTPTKWDC*EEKWSFV----GSNSC 640
QR+ Q IL RH+S*VL T T+WD *EEK F G SC
Sbjct: 2469 QRI*KQQVH*ILHI*RHHS*VLCSHYTTTEWDS*EEKQDFARGCSGHASC 2618
>BM307983
Length = 406
Score = 74.3 bits (181), Expect = 4e-13
Identities = 44/114 (38%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Frame = +1
Query: 1004 GKIGSQRIHSDLWSRLLRDICPYCKNEYCQGDI-IFSS*LQLELAPI*CEKCLPSWRT*R 1062
G++G + IH +LW RL DIC K + I + +S + L A I*C KCL +W+ R
Sbjct: 64 GEVGCKGIHPNLWDRL*GDICSVAKMNTVRIIISLAASTIWLGDASI*C*KCLLTWKLGR 243
Query: 1063 RDLHECAPWIR*TYYYQHRVQVEKSFIWAKAVTTCMVW*IH*SYGRFGLQRKSR 1116
R +H + WI + + +Q ++ IW++AV++ +VW*+H SY FG+Q K R
Sbjct: 244 RSIHGDSTWIWCQ*WRK*SLQTKEGPIWSQAVSSGLVW*VHSSYVIFGVQAKPR 405
>BU550032 similar to GP|27901696|gb| gag-pol polyprotein {Vitis vinifera},
partial (21%)
Length = 698
Score = 72.4 bits (176), Expect = 1e-12
Identities = 33/73 (45%), Positives = 48/73 (65%)
Frame = -2
Query: 1373 MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKR 1432
M+LYCDN+ A++IA NPV H+R KH+E++ HFI+EKL S I T +++S D ++LTK
Sbjct: 565 MKLYCDNQAALHIASNPVFHERAKHIEIDCHFIREKLLSKEIITEFINSNDQPTNILTKS 386
Query: 1433 LNNNNFEKFVSKL 1445
L + L
Sbjct: 385 LRGTRIQSICPSL 347
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 69.3 bits (168), Expect = 1e-11
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +3
Query: 1370 DEPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLL 1429
+EPM + DNK A+ +A NPV H+++KH++ HFI+E ++ + YV SQD AD+
Sbjct: 192 EEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADIF 371
Query: 1430 TKRLNNNNFEKFVSKLGM 1447
TK L F K S LG+
Sbjct: 372 TKPLKLETFVKLRSMLGV 425
>BU545438
Length = 579
Score = 67.8 bits (164), Expect = 3e-11
Identities = 35/90 (38%), Positives = 53/90 (58%)
Frame = -1
Query: 1361 LERLEDKDFDEPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVS 1420
LE + +K D+P ++ CDNK AI +A NPV H+RTKH+ + HFI+E + I Y
Sbjct: 531 LEDMGEKQ-DKPTKINCDNKSAIAMAKNPVYHNRTKHIAIKYHFIREAEATKEIKLDYCR 355
Query: 1421 SQDNLADLLTKRLNNNNFEKFVSKLGMIDI 1450
++D + TK L FE+ + LG+ +I
Sbjct: 354 TEDQXXXIFTKALXXXRFEELRAMLGVTEI 265
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 67.0 bits (162), Expect = 6e-11
Identities = 28/75 (37%), Positives = 50/75 (66%)
Frame = +1
Query: 1371 EPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLT 1430
+P+ L DNK AIN+A +P H R+KH+E+ H+I++++ G + Y +++ LADL+T
Sbjct: 448 KPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHYIRDQVSKGNVTVEYCKAEEQLADLMT 627
Query: 1431 KRLNNNNFEKFVSKL 1445
K + + F++ S+L
Sbjct: 628 KPIQVSRFKQICSEL 672
>TC235104 weakly similar to UP|Q850H8 (Q850H8) Gag-pol polyprotein
(Fragment), partial (28%)
Length = 865
Score = 61.2 bits (147), Expect(2) = 6e-09
Identities = 33/96 (34%), Positives = 52/96 (53%)
Frame = +2
Query: 483 LYHYRVGDPSFRVIKQLFPLFFKTLDVESFQCELCELAKHKRVTFSVSNKMSTFPFYLVH 542
L H R+G P +K + P K D+ CE C+L KH R + PF ++H
Sbjct: 311 LLHERLGHPHLSKLKIMVPSLEKIKDLF---CESCQLGKHVRSSXRHVESRVDSPFLVIH 481
Query: 543 TNVWGPSNVPNISGARWFVTFIDDCTWVTWVYFLHD 578
++WGP+ V ++S R+FVTFID+ + T V+ + +
Sbjct: 482 XDIWGPNRVSSMS-YRYFVTFIDEFSQCTRVFLMKE 586
Score = 18.9 bits (37), Expect(2) = 6e-09
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 428 LITLVFFRTKSRGGRLKLLENGMVFT 453
++T + +R R GRL N MVFT
Sbjct: 183 MLTPLSYRNVVRVGRLA*ELNLMVFT 260
>BU548243
Length = 599
Score = 58.9 bits (141), Expect = 2e-08
Identities = 31/74 (41%), Positives = 45/74 (59%)
Frame = -1
Query: 1372 PMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTK 1431
P + CDNK A+ IAHN V H RTKH+E++ F+ EK+ S + ++ + D A +LTK
Sbjct: 377 PPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQIFHIPALDQWAGILTK 198
Query: 1432 RLNNNNFEKFVSKL 1445
L++ F SKL
Sbjct: 197 PLSSARFTFLKSKL 156
>BG840035 weakly similar to GP|9294121|dbj copia-like retrotransposable element
{Arabidopsis thaliana}, partial (3%)
Length = 804
Score = 56.6 bits (135), Expect = 8e-08
Identities = 29/77 (37%), Positives = 44/77 (56%)
Frame = +2
Query: 1371 EPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLT 1430
EP ++ DN+ I+I++N V H RTKH ++ F++E G + Y S+D AD+LT
Sbjct: 314 EPTQILVDNQTTISISNNHVFHGRTKHFKIKLFFLRETQREGEVKLIYCRSEDQSADILT 493
Query: 1431 KRLNNNNFEKFVSKLGM 1447
K FE +KLG+
Sbjct: 494 KVFPKVRFEVLRNKLGV 544
>BU764568
Length = 420
Score = 38.1 bits (87), Expect(2) = 1e-07
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +3
Query: 1370 DEPMRLYCDNKYAINIAHNPVQHDRTKHL 1398
D M L CDN+ A++IA NP+ H RTKH+
Sbjct: 333 DTQMTLICDNQAALHIASNPIFH*RTKHI 419
Score = 37.4 bits (85), Expect(2) = 1e-07
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +2
Query: 1312 IDYKILHFPG*EPCDLEK*KTKCGIQI*C*SRVQGNGTGDM*ITMA 1357
ID +IL + LEK*+ KC QI C*SR+QG+G G++* MA
Sbjct: 161 IDIRILCIDWRKLDILEK*EAKCCSQIKC*SRIQGHGFGNL*AHMA 298
>TC234456
Length = 486
Score = 55.8 bits (133), Expect = 1e-07
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +2
Query: 1375 LYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKRLN 1434
++C N+ A+ IA+NPV H RTKH++++ F++EK+ S + ++ + D AD LTK L+
Sbjct: 11 IFCHNQRAVAIANNPVLHARTKHMDIDIFFVREKVLSKQLVVHHILALDQWADALTKPLS 190
Query: 1435 NNNF 1438
F
Sbjct: 191 PTRF 202
>CO981879
Length = 576
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 27/59 (45%), Positives = 34/59 (56%), Gaps = 1/59 (1%)
Frame = -1
Query: 693 SHP*NIWVYVVCPYP**W*RET*S*SFKMCLYRVFFHPKGLQML-SSSSQILCLSRCHL 750
S *NIWV+ C Y * R+T*+*S KMC + PKG+QM S + LC C+L
Sbjct: 201 STS*NIWVHCFCTYS*TKPRKT*A*SKKMCFCWLCSQPKGIQMF*SHFQENLCYY*CYL 25
Score = 33.1 bits (74), Expect(2) = 2e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -3
Query: 597 LF*SQFKFILSKRRHNS*VLLC*NTPTKWDC*EEKWSFVGSNSCYVIPK*NSQEILG 653
+F* K + S + HNS LLC*++ TKW * EK + S+ ++ K* ++ LG
Sbjct: 490 IF*QALKQVXS*KWHNSSKLLC*HSTTKWSG*TEK*TPX*SS*GIIVSK*GTKIXLG 320
>TC234402 weakly similar to GB|AAR24647.1|38603804|BT010869 At2g23330
{Arabidopsis thaliana;} , partial (7%)
Length = 461
Score = 51.6 bits (122), Expect(2) = 2e-07
Identities = 24/44 (54%), Positives = 34/44 (76%)
Frame = +1
Query: 1373 MRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLICT 1416
M+LYCD+ A++IA NPV H+RTKH+EV +F++EKL + I T
Sbjct: 58 MQLYCDD*AALHIASNPVFHERTKHIEVACYFVREKLMAKEIST 189
Score = 23.1 bits (48), Expect(2) = 2e-07
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 1419 VSSQDNLADLLTKRLNNNNFEKFVSKL 1445
+ S D LA +LTK L + SKL
Sbjct: 197 IGSNDQLAGILTKSLRGPRIQFLCSKL 277
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 54.3 bits (129), Expect(2) = 3e-07
Identities = 21/39 (53%), Positives = 33/39 (83%)
Frame = +2
Query: 1371 EPMRLYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKL 1409
+ M+L CDN+ A++IA NPV H+RTKH+E++ HF++EK+
Sbjct: 218 QQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +3
Query: 1398 LEVNKHFIKEKLDSGLICTPYVSSQDNLADLLTKRLNNNNFEKFVSKLGMIDIHS 1452
L K F KE + +VSS D LA++ TK L + SKLG ++++
Sbjct: 318 LSGRKSFSKE------VIIEFVSSNDQLANIFTKSLRGPRIQNICSKLGAFELYA 464
Score = 19.6 bits (39), Expect(2) = 3e-07
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 1301 CGLCKVNCG*EIDYKILHFPG*EPCDLEK*KTKCGIQI*C 1340
C L + * ++IL + C +E+* KC ++*C
Sbjct: 10 CKLGSITH**GFHFRILRVYWRKSCLMEE**VKCCCKV*C 129
>TC207859
Length = 751
Score = 52.8 bits (125), Expect = 1e-06
Identities = 38/93 (40%), Positives = 46/93 (48%), Gaps = 5/93 (5%)
Frame = +1
Query: 483 LYHYRVGDPSFRVIKQLFPLFFKTLDVESFQCELCELAKHKRVTFSVS-NKMSTFPFYLV 541
L H + PS + L P ++S QCE L KH T S NK PF LV
Sbjct: 475 LAH*HLHHPSLNKLHLLVP---SVSIIKSLQCESYLLGKHVCHTCSPHVNKHVASPFALV 645
Query: 542 HTNVWGPSNVPNISGARWFVTFIDD----CTWV 570
H+++WG S V G +FVTFIDD CTWV
Sbjct: 646 HSDIWGLSCVYLTLGYFYFVTFIDDFFLKCTWV 744
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/80 (38%), Positives = 46/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 1375 LYCDNKYAINIAHNPVQHDRTKHLEVNKHFIKEKLDSGLI-CTPYVSSQDNLADLLTKRL 1433
+YCDN+ A+ P++ LE++ H ++EK GL+ C VSS + LAD+ TK L
Sbjct: 324 IYCDNQSALQ*L--PIKVIYHGQLEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKAL 497
Query: 1434 NNNNFEKFVSKLGMIDIHSP 1453
+ F +SKLG+ DI P
Sbjct: 498 SPKLFSSNLSKLGLSDIFLP 557
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.364 0.163 0.626
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,562,625
Number of Sequences: 63676
Number of extensions: 1150615
Number of successful extensions: 15711
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 6429
Number of HSP's successfully gapped in prelim test: 592
Number of HSP's that attempted gapping in prelim test: 8896
Number of HSP's gapped (non-prelim): 7864
length of query: 1453
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1344
effective length of database: 5,698,948
effective search space: 7659386112
effective search space used: 7659386112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 65 (29.6 bits)
Medicago: description of AC147471.11