BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147435.9 + phase: 0
(351 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC214860 similar to UP|ATPG_TOBAC (P29790) ATP synthase gamma ch... 462 e-130
TC214859 similar to UP|ATPG_TOBAC (P29790) ATP synthase gamma ch... 462 e-130
TC214864 homologue to UP|ATP1_ARATH (Q01908) ATP synthase gamma ... 150 1e-36
TC214089 similar to UP|ATP3_IPOBA (P26360) ATP synthase gamma ch... 115 2e-26
BQ299276 similar to SP|P28552|ATPG ATP synthase gamma chain chl... 91 1e-18
TC214340 similar to UP|ATP3_IPOBA (P26360) ATP synthase gamma ch... 70 1e-12
TC214301 homologue to UP|Q6UA03 (Q6UA03) Fiber protein Fb33 (Fra... 69 2e-12
TC214403 homologue to UP|Q6UA03 (Q6UA03) Fiber protein Fb33 (Fra... 59 3e-09
TC214861 homologue to UP|Q70I24 (Q70I24) SUMO E2 conjugating enz... 49 3e-06
TC213128 30 1.3
TC228106 similar to UP|Q8H6R5 (Q8H6R5) CTV.12, partial (62%) 28 6.2
TC225036 similar to UP|O65357 (O65357) Aquaporin 2, partial (92%) 28 8.1
>TC214860 similar to UP|ATPG_TOBAC (P29790) ATP synthase gamma chain,
chloroplast precursor , partial (96%)
Length = 1563
Score = 462 bits (1189), Expect = e-130
Identities = 235/327 (71%), Positives = 277/327 (83%)
Frame = +2
Query: 22 QIRCGIREIRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQ 81
QI+CG+RE+R RI SVK TQKITEAMKLVAAA+VRRAQEAV+N RPFSE E L++IN+
Sbjct: 287 QIQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINE 466
Query: 82 SLQNDDVVVPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVI 141
LQ +DV +PLT VRPVK VAL+VITGDRGLCGGFNN++ KKAEAR+ ELK LG+ VI
Sbjct: 467 QLQTEDVDIPLTKVRPVKKVALVVITGDRGLCGGFNNAIIKKAEARIRELKELGLQFTVI 646
Query: 142 SVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFV 201
SVGKKG+SYF R ++ VD+F++ PT K+AQ IADDVFSLFV+EEVDKVEL+YTKFV
Sbjct: 647 SVGKKGNSYFIRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFV 826
Query: 202 SLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKKKMKDG 261
SLV+ +PVI TLLPLS KGE+ D+NG VD EDEFFRLT+K+GKL ++RDV + K D
Sbjct: 827 SLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTID- 1003
Query: 262 FVPVMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKEL 321
F P+++FEQDP QILDA++PLYLNSQVL+ALQESLASELAARM AMSNATDNA+EL K L
Sbjct: 1004FSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNL 1183
Query: 322 SVAYNRERQAKITGEILEIVAGAEALR 348
S+ YNRERQAKITGEILEIVAGA AL+
Sbjct: 1184SIVYNRERQAKITGEILEIVAGANALQ 1264
>TC214859 similar to UP|ATPG_TOBAC (P29790) ATP synthase gamma chain,
chloroplast precursor , partial (96%)
Length = 1508
Score = 462 bits (1188), Expect = e-130
Identities = 235/327 (71%), Positives = 277/327 (83%)
Frame = +1
Query: 22 QIRCGIREIRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQ 81
QI+CG+RE+R RI+SVK TQKITEAMKLVAAA+VRRAQEAV+N RPFSE E L++IN+
Sbjct: 244 QIQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINE 423
Query: 82 SLQNDDVVVPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVI 141
L +DV +PLT VRPVK VAL+V+TGDRGLCGGFNN++ KKAEAR+ ELK LG+ VI
Sbjct: 424 QLLTEDVDIPLTKVRPVKKVALVVVTGDRGLCGGFNNAIIKKAEARIRELKELGLEFTVI 603
Query: 142 SVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIADDVFSLFVTEEVDKVELVYTKFV 201
SVGKKG+SYF R ++ VDRF++ PT K+AQ IADDVFSLFV+EEVDKVEL+YTKFV
Sbjct: 604 SVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFV 783
Query: 202 SLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKKKMKDG 261
SLV+ +PVI TLLPLS KGE+ DVNG VD EDEFFRLT+K+GKL ++RDV + K D
Sbjct: 784 SLVKSDPVIHTLLPLSPKGEICDVNGVCVDAAEDEFFRLTTKEGKLTVERDVVRTKTAD- 960
Query: 262 FVPVMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKEL 321
F P+++FEQDP QILDA++PLYLNSQVL+ALQESLASELAARM AMSNATDNA+EL K L
Sbjct: 961 FSPILQFEQDPVQILDALLPLYLNSQVLRALQESLASELAARMSAMSNATDNAIELKKNL 1140
Query: 322 SVAYNRERQAKITGEILEIVAGAEALR 348
S+ YNRERQAKITGEILEIVAGA AL+
Sbjct: 1141SIVYNRERQAKITGEILEIVAGANALQ 1221
>TC214864 homologue to UP|ATP1_ARATH (Q01908) ATP synthase gamma chain 1,
chloroplast precursor , partial (38%)
Length = 494
Score = 150 bits (378), Expect = 1e-36
Identities = 74/104 (71%), Positives = 86/104 (82%)
Frame = +3
Query: 43 ITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVVVPLTAVRPVKTVA 102
I AMKLVAAA+VRRAQEAV+N RPFSE E L++IN+ LQ +DV +PLT VRPVK VA
Sbjct: 57 INAAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDVDIPLTKVRPVKKVA 236
Query: 103 LIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVVISVGKK 146
L+VITGDRGLCGGFNN++ KKAEAR+ ELK LG+ VISVGKK
Sbjct: 237 LVVITGDRGLCGGFNNAIIKKAEARIRELKELGLQFTVISVGKK 368
Score = 65.9 bits (159), Expect = 3e-11
Identities = 31/40 (77%), Positives = 36/40 (89%)
Frame = +2
Query: 188 EEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNG 227
EEVDKVEL+YTKFVSLV+ +PVI TLLPLS KGE+ D+NG
Sbjct: 371 EEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDING 490
Score = 31.6 bits (70), Expect = 0.56
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = -1
Query: 29 EIRDRINSVKTTQKITEAMKLVAA 52
++ RI+SVK TQKITEAM+++++
Sbjct: 77 KLHSRIDSVKNTQKITEAMRVLSS 6
>TC214089 similar to UP|ATP3_IPOBA (P26360) ATP synthase gamma chain,
mitochondrial precursor , partial (90%)
Length = 1419
Score = 115 bits (289), Expect = 2e-26
Identities = 95/322 (29%), Positives = 158/322 (48%), Gaps = 4/322 (1%)
Frame = +1
Query: 30 IRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVV 89
+R+R+ SV+ QKIT+AMK+VAA+++R Q NSR + F +L DD
Sbjct: 310 VRNRMKSVRNIQKITKAMKMVAASKLRAVQTRTENSRGLWQPFT--------ALLGDDPS 465
Query: 90 VPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGIN--CVVISVGKKG 147
V VK ++ I+ D+GLCGG N++ K + RV+ N G + + +G+K
Sbjct: 466 VD------VKKNVVVTISSDKGLCGGINSTSVKIS--RVLNKLNSGPDKETKYVILGEKA 621
Query: 148 SSYFNRSGFVEVDRFIDNVGFPTTKDAQI--IADDVFSLFVTEEVDKVELVYTKFVSLVR 205
+ R ++ + + Q+ +ADD+ E D + +V+ KF S+V+
Sbjct: 622 KAQLLRDSKKQIALSLTELQKNPLNYTQVSVLADDILK---NVEYDALRIVFNKFHSVVQ 792
Query: 206 FNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKKKMKDGFVPV 265
F P + T+L S +V+E E GKL ++ +++ G
Sbjct: 793 FLPTVATVL--------------SPEVIERE----AESGGKLG---ELDSYEIEGG---- 897
Query: 266 MEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAY 325
+ A+IL + + + A+ E+ SE ARM AM +++ NA ++ L++ Y
Sbjct: 898 ----ETKAEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTY 1065
Query: 326 NRERQAKITGEILEIVAGAEAL 347
NR RQA IT E++EI++GA AL
Sbjct: 1066NRTRQASITTELIEIISGASAL 1131
>BQ299276 similar to SP|P28552|ATPG ATP synthase gamma chain chloroplast
precursor (EC 3.6.3.14). [Garden pea] {Pisum sativum},
partial (34%)
Length = 421
Score = 90.5 bits (223), Expect = 1e-18
Identities = 46/69 (66%), Positives = 54/69 (77%)
Frame = +3
Query: 22 QIRCGIREIRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQ 81
QI+CG+RE+R RI SVK TQKITEAMKLVAAA+VRRAQEAV+N RPFSE E L++
Sbjct: 90 QIQCGLRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYTKFV 269
Query: 82 SLQNDDVVV 90
SL D V+
Sbjct: 270 SLVKSDPVI 296
Score = 84.7 bits (208), Expect = 6e-17
Identities = 40/59 (67%), Positives = 50/59 (83%)
Frame = +3
Query: 193 VELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKR 251
VE++YTKFVSLV+ +PVI TLLPLS KGE+ D+NG VD EDEFFRLT+K+GKL ++R
Sbjct: 243 VEVLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVER 419
>TC214340 similar to UP|ATP3_IPOBA (P26360) ATP synthase gamma chain,
mitochondrial precursor , partial (69%)
Length = 1093
Score = 70.1 bits (170), Expect = 1e-12
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 4/189 (2%)
Frame = +2
Query: 30 IRDRINSVKTTQKITEAMKLVAAARVRRAQEAVINSRPFSEAFAETLHSINQSLQNDDVV 89
+R+R+ SV+ QKIT+AMK+VAA+++R Q NSR + F L N S
Sbjct: 275 VRNRMKSVRNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGD-NPSAD----- 436
Query: 90 VPLTAVRPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGIN--CVVISVGKKG 147
VK ++ I+ D+GLCGG N++ K +RV+ N G + + +G+K
Sbjct: 437 --------VKKNVVVTISSDKGLCGGINSTSVK--ISRVLYKLNSGPDKETKYVILGEKA 586
Query: 148 SSYFNRSGFVEVDRFIDNVGFPTTKDAQ--IIADDVFSLFVTEEVDKVELVYTKFVSLVR 205
+ R + + + Q ++ADD+ E D + +V+ KF S+V+
Sbjct: 587 KAQLLRDSRKHIVLSLTELQKNPLNYTQVSVLADDILK---NVEYDALRIVFNKFHSVVQ 757
Query: 206 FNPVIQTLL 214
F P + T+L
Sbjct: 758 FLPTVATVL 784
>TC214301 homologue to UP|Q6UA03 (Q6UA03) Fiber protein Fb33 (Fragment),
partial (50%)
Length = 782
Score = 69.3 bits (168), Expect = 2e-12
Identities = 49/159 (30%), Positives = 81/159 (50%)
Frame = +2
Query: 189 EVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLA 248
E D + +V+ KF S+V+F P + T+L S +V+E E GKL
Sbjct: 11 EYDALRIVFNKFHSVVQFLPTVSTVL--------------SPEVIERE----AESGGKLG 136
Query: 249 LKRDVKKKKMKDGFVPVMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMS 308
++ +++ G + A+IL + + + A+ E+ SE ARM AM
Sbjct: 137 ---ELDSYEIEGG--------ETKAEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMD 283
Query: 309 NATDNAVELTKELSVAYNRERQAKITGEILEIVAGAEAL 347
+++ NA ++ L++ YNR RQA IT E++EI++GA AL
Sbjct: 284 SSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASAL 400
>TC214403 homologue to UP|Q6UA03 (Q6UA03) Fiber protein Fb33 (Fragment),
partial (43%)
Length = 637
Score = 58.9 bits (141), Expect = 3e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +2
Query: 266 MEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAY 325
+E + A+IL + + + A+ E+ SE ARM AM +++ NA ++ L++ Y
Sbjct: 104 IEGGETKAEILQNLAEFQFSCVMYNAVLENACSEPGARMSAMDSSSRNAGDMLDRLTLTY 283
Query: 326 NRERQAKITGEILEIVAGAEAL 347
NR RQA IT E++EI++GA AL
Sbjct: 284 NRTRQASITPELIEIISGASAL 349
>TC214861 homologue to UP|Q70I24 (Q70I24) SUMO E2 conjugating enzyme SCE1,
complete
Length = 1013
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/39 (58%), Positives = 29/39 (73%)
Frame = -3
Query: 140 VISVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIA 178
VISVGKKG+SYF R ++ VDRF++ PT K+AQ IA
Sbjct: 117 VISVGKKGNSYFIRRPYIPVDRFLEGGTLPTAKEAQAIA 1
>TC213128
Length = 667
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 133 NLGINCVVISVGKKGSSYFNRSGFVEVDRFIDNVGFPT 170
++G N VV++V GSS G E+ RF + GFPT
Sbjct: 219 SVGGNNVVVTVAPLGSSVTELPGGFEISRF*NITGFPT 106
>TC228106 similar to UP|Q8H6R5 (Q8H6R5) CTV.12, partial (62%)
Length = 1485
Score = 28.1 bits (61), Expect = 6.2
Identities = 31/126 (24%), Positives = 52/126 (40%), Gaps = 3/126 (2%)
Frame = +3
Query: 197 YTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNSVDVLEDEFFRLTSKDGKLALKRDVKKK 256
+TKFVS V + P+ T LP ++ + + FR L K+K
Sbjct: 51 FTKFVSFVNWFPIHHTSLPSNRNMD--------AQAKKKALFR-------AKLNAQKKEK 185
Query: 257 KMKDGFVPVMEFEQDPAQILDAMM---PLYLNSQVLKALQESLASELAARMGAMSNATDN 313
+++ V EF+Q ++ D ++ L+ QV + +E A+SN N
Sbjct: 186 RIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRKHRE-----------AISNLKAN 332
Query: 314 AVELTK 319
A LT+
Sbjct: 333 AAGLTQ 350
>TC225036 similar to UP|O65357 (O65357) Aquaporin 2, partial (92%)
Length = 1610
Score = 27.7 bits (60), Expect = 8.1
Identities = 26/106 (24%), Positives = 47/106 (43%), Gaps = 5/106 (4%)
Frame = -1
Query: 86 DDVVVPLTAV-----RPVKTVALIVITGDRGLCGGFNNSVAKKAEARVMELKNLGINCVV 140
D +V+P V RP + + GDR GG N +K + + N+G++C
Sbjct: 1220 DPLVIPSLLVVEYDSRPKASSWVDASAGDRD--GGQVNHEHRKPNWKWCQHGNMGVSCYS 1047
Query: 141 ISVGKKGSSYFNRSGFVEVDRFIDNVGFPTTKDAQIIADDVFSLFV 186
+ +G +R V+ ++ +N+ T A I++ V + FV
Sbjct: 1046 LGIG-------SREDGVDKNKGANNLSAQTGSFAVTISEHVHATFV 930
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,620,835
Number of Sequences: 63676
Number of extensions: 109942
Number of successful extensions: 594
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of query: 351
length of database: 12,639,632
effective HSP length: 98
effective length of query: 253
effective length of database: 6,399,384
effective search space: 1619044152
effective search space used: 1619044152
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC147435.9