TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147435.7 + phase: 0 
         (1667 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete            1066  0.0
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co...  1066  0.0
TC232995                                                              230  4e-60
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ...   228  2e-59
TC211311 weakly similar to UP|O24587 (O24587) Pol protein, parti...   227  4e-59
TC213445                                                              123  2e-48
BM143109                                                              171  2e-42
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro...   170  6e-42
AI959950                                                              166  6e-41
BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Gl...   159  7e-39
CO983516                                                              152  2e-36
AI855982                                                              145  1e-34
AI966222                                                              117  5e-32
NP004897 gag-protease polyprotein                                     134  3e-31
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi...   132  1e-30
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag...   130  5e-30
CO982036                                                              127  3e-29
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V...   124  3e-28
BI321712                                                              122  1e-27
BG508993                                                              120  5e-27

>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
          Length = 4731

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 640/1675 (38%), Positives = 921/1675 (54%), Gaps = 49/1675 (2%)
 Frame = +1

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   D        T  + +L
Sbjct: 49   DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 228

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229  ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 408

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409  LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D D+
Sbjct: 589  CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272  DEDQSVKMAMLSNKLEYLARKQKK----------FLSKRGSYKNSKKEDQKG-------C 314
            DE  +  + +L  +   +  +  K          F  ++GS K  K+ D K        C
Sbjct: 730  DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKRSDVKPSHSKGIQC 906

Query: 315  FNCKKPGHFIVDCPDLQKEKFKGKSMKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH I +CP   K+  KG S+  S                   D +SE  SD   
Sbjct: 907  HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 1020

Query: 375  ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A  G+  T            +ED ++  S+I   EL  S ++L    E    + 
Sbjct: 1021 SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQE 1164

Query: 435  TDLKEKYVDLMKQQKSTLLELKASKEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNK 494
              LK+   DL  ++++   E+   K E+ GF  +++  E+  KS+     +  +KGS   
Sbjct: 1165 AQLKKVIADLEAEKEAHKEEISELKGEV-GF--LNSKLENMTKSI-----KMLNKGSDT- 1317

Query: 495  HEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
                LD+ ++ G              KN G  +G+G++ + +   ++            +
Sbjct: 1318 ----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTM------------T 1407

Query: 553  TFVP-EGTNAVTADQSKSEASGSQAKITSKPENLKIKVMTKSD---PKSQKITILKRSET 608
             FVP +     T  Q +S   G Q K  SK +  +     K     P    +       T
Sbjct: 1408 EFVPAKNRTGATMSQHRSRHHGMQQK-KSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGT 1584

Query: 609  VHQNLIKPESKIPKQKDQKNKAATASEKTIPK-------------GVKPKVLNDQKTLSI 655
               N  K    +PK K       T+   +  +             GVK  +LN +   + 
Sbjct: 1585 QSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTS 1764

Query: 656  HP--------KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCT 707
            +         K+ G    + +   S+N V LV GL  NL+SISQ CD G++V F+K+ C 
Sbjct: 1765 YVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC- 1941

Query: 708  LVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKI 767
            LV  +   +  KG R ++   +           CL S  D+  +WH+R GH + R + KI
Sbjct: 1942 LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKI 2121

Query: 768  SKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTAS 827
                 V+G+PN+      +CG CQ GK VK S +     +TSR LELLH+DL GP+   S
Sbjct: 2122 IDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVES 2301

Query: 828  LYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFE 887
            L G +Y  V+VDD+SR+TWV FI+ K    EVF     ++Q EK+  I ++RSDHG EFE
Sbjct: 2302 LGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFE 2481

Query: 888  NEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNT 947
            N  F  FC   GI HEFS+  TPQQNG+VERKNRTLQE AR M+H   L  + WAEA+NT
Sbjct: 2482 NSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNT 2661

Query: 948  SCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIF 1007
            +CYI NR+ +R     T YE++KGR+P++ +FH FG  CYIL  ++  +K D K+  GIF
Sbjct: 2662 ACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIF 2841

Query: 1008 LGYSERSKAYRVYNSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPS 1067
            LGYS  S+AYRV+NS T+ V ES++V  DD  P  K   + +      +  DA       
Sbjct: 2842 LGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADA------- 3000

Query: 1068 DSEKYTEVESSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHH 1127
                               A+S   AE S    +ES        +   IQ        H 
Sbjct: 3001 -------------------AKSGENAENSDSATDESNINQPDKRSSTRIQ------KMHP 3105

Query: 1128 EELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRND 1187
            +ELIIG  +    TRS   +  S    +S IEPK V+EAL+D+ WI AMQEEL QF+RN+
Sbjct: 3106 KELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNE 3285

Query: 1188 VWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARL 1247
            VW+LVP+P   N+IGTKW+F+NK NE+G +TRNKARLVAQGY+Q EG+D+ ETFAPVARL
Sbjct: 3286 VWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARL 3465

Query: 1248 EAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLY 1307
            E+IRLLL  A      LYQMDVKSAFLNG + EEVYV+QP GF D  HP+HVY+LKK+LY
Sbjct: 3466 ESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALY 3645

Query: 1308 GLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLC 1367
            GLKQAPRAWY+RL+ FL +  + +G +D TLF +   ++++I QIYVDDI+FG  +  + 
Sbjct: 3646 GLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEML 3825

Query: 1368 KEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1427
            + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +++ Q++Y K ++KKF +E+     TP
Sbjct: 3826 RHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTP 4005

Query: 1428 MHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAV 1487
                  LSK++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ SHLT V
Sbjct: 4006 APTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQV 4185

Query: 1488 KRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASK 1547
            KRI +Y+ GT++ G++Y    +  L+G+CDAD+AG   +RKSTSG C +LG NLISW SK
Sbjct: 4186 KRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSK 4365

Query: 1548 KQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILH 1607
            KQ  +++STAEAEYI+A + C+QL+WMK  L++Y +  + + +YCDN +AI +SKNP+ H
Sbjct: 4366 KQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQH 4545

Query: 1608 SRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1662
            SR KHI+I+HH+IRD V   ++ ++ +DTE Q ADIFTK L   +F+ ++  L +
Sbjct: 4546 SRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGI 4710


>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
          Length = 4734

 Score = 1066 bits (2756), Expect = 0.0
 Identities = 632/1672 (37%), Positives = 931/1672 (54%), Gaps = 41/1672 (2%)
 Frame = +1

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   +        T  + +L
Sbjct: 49   DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 228

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229  ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409  LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++  T KKSK++A  S              E EE+  D D+
Sbjct: 589  CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272  DEDQSVKMAMLSNK----LEYLARKQKK------FLSKRGSYKNSKKEDQKG-------C 314
            DE  +  + +L  +    L  + R+QK       F  ++GS +  KK D+K        C
Sbjct: 730  DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKKSDEKPSHSKGIQC 906

Query: 315  FNCKKPGHFIVDCPDLQKEKFKGKSMKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH   +CP   K++ KG S+  S                  +D +SE  SD   
Sbjct: 907  HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023

Query: 375  ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A  G   +            +ED ++  S+I   EL  S +EL    E    + 
Sbjct: 1024 SDRDVNALTGRFES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQE 1167

Query: 435  TDLKEKYVDLMKQQKSTLLELKASKEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNK 494
              LK+   +L  ++++   E+   K E+ GF  +++  E+  KS+     +  +KGS   
Sbjct: 1168 AQLKKVIANLEAEKEAHEEEISELKGEV-GF--LNSKLENMTKSI-----KMLNKGSD-- 1317

Query: 495  HEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
                LD+ +  G              KN G  +G+G++ + +   ++  +    K+   +
Sbjct: 1318 ---MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRTTMTEFVPA-KNSTGA 1443

Query: 553  TFVPEGTNAVTADQSKSEASGSQAKITSKPENLKIKVM---------TKSDPKSQKITIL 603
            T     +      Q KS+    +     K  ++K             T+S    +K+  +
Sbjct: 1444 TMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWV 1623

Query: 604  KRSETVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKTLSIHP------ 657
             + + V   ++    +   ++D    +  +   T   GVK  ++N +   + +       
Sbjct: 1624 PKHKIVSL-VVHTSLRASAKEDWYLDSGCSRHMT---GVKEFLVNIEPCSTSYVTFGDGS 1791

Query: 658  --KVQGRKSTIGNSSISINNVWLVDGLKHNLLSISQFCDNGYDVTFSKTNCTLVNKDDKS 715
              K+ G    + +   S+N V LV GL  NL+SISQ CD G++V F+K+ C LV  +   
Sbjct: 1792 KGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSE 1968

Query: 716  ITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKG 775
            +  KG R ++   +           CL S  D+  +WH+R GH + R + KI     V+G
Sbjct: 1969 VLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRG 2148

Query: 776  LPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGL 835
            +PN+      +CG CQ GK VK S +     +TSR LELLH+DL GP+   SL G +Y  
Sbjct: 2149 IPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAY 2328

Query: 836  VIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFC 895
            V+VDD+SR+TWV FI+ K    EVF     ++Q EK+  I ++RSDHG EFEN  F  FC
Sbjct: 2329 VVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFC 2508

Query: 896  EKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRI 955
               GI HEFS+  TPQQNG+VERKNRTLQE AR M+H   L  + WAEA+NT+CYI NR+
Sbjct: 2509 TSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRV 2688

Query: 956  YIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSK 1015
             +R     T YE++KGR+P + +FH FG  CYIL  ++  +K D K+  GIFLGYS  S+
Sbjct: 2689 TLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSR 2868

Query: 1016 AYRVYNSETQCVEESMHVKFDDREPESKTSEQSESNAGTTDSEDASESDQPSDSEKYTEV 1075
            AYRV+NS T+ V ES++V  DD  P  K   + +           +  D  +D+ K  E 
Sbjct: 2869 AYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVR---------TSGDNVADTAKSAE- 3018

Query: 1076 ESSPEAEITPEAESNSEAEPSPKVQNESASEDFQDNTQQVIQPKFKHKSSHHEELIIGSK 1135
                       AE++  A   P +                 +P  + +  H +ELIIG  
Sbjct: 3019 ----------NAENSDSATDEPNINQPDK------------RPSIRIQKMHPKELIIGDP 3132

Query: 1136 DSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKP 1195
            +    TRS   +  S    +S IEPK V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P
Sbjct: 3133 NRGVTTRSREIEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRP 3312

Query: 1196 FQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLS 1255
               N+IGTKW+F+NK NE+G +TRNKARLVAQGY+Q EG+D+ ETFAPVARLE+IRLLL 
Sbjct: 3313 EGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLG 3492

Query: 1256 YAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRA 1315
             A      LYQMDVKSAFLNG + EE YV+QP GF D  HP+HVY+LKK+LYGLKQAPRA
Sbjct: 3493 VACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRA 3672

Query: 1316 WYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQ 1375
            WY+RL+ FL +  + +G +D TLF +   ++++I QIYVDDI+FG  +  + + F + MQ
Sbjct: 3673 WYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQ 3852

Query: 1376 DEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS 1435
             EFEMS++GEL +FLG+Q+ Q ++ +++ Q+KY K ++KKF +E+     TP      LS
Sbjct: 3853 SEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLS 4032

Query: 1436 KEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLK 1495
            K++ GT VDQ LYR MIGSLLYLTASRPDI ++V +CAR+Q++P+ SHL  VKRI +Y+ 
Sbjct: 4033 KDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVN 4212

Query: 1496 GTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMS 1555
            GT++ G++Y    D  L+G+CDAD+AG   +RKSTSG C +LG NLISW SKKQ  +++S
Sbjct: 4213 GTSDYGIMYCHCSDSMLVGYCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLS 4392

Query: 1556 TAEAEYISAANCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEI 1615
            TAEAEYI+A + C+QL+WMK  L++Y +  + + +YCDN +AI +SKNP+ HSR KHI+I
Sbjct: 4393 TAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDI 4572

Query: 1616 KHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMHFVSD 1667
            +HH+IRD V   ++ ++ +DTE Q ADIFTK L   +F+ ++  L +  + D
Sbjct: 4573 RHHYIRDLVDDKVITLEHVDTEEQIADIFTKALDANQFEKLRGKLGICLLED 4728


>TC232995 
          Length = 1009

 Score =  230 bits (586), Expect = 4e-60
 Identities = 109/173 (63%), Positives = 139/173 (80%)
 Frame = +2

Query: 1284 VKQPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTL 1343
            V+QPPGFE    PNHVYKL+K+LYGLKQAPRAWY+RLSNFL++ +F RG+VDTTLF +  
Sbjct: 2    VEQPPGFEISDKPNHVYKLQKALYGLKQAPRAWYERLSNFLLEKEFSRGKVDTTLFIKRK 181

Query: 1344 KKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYV 1403
              DIL+VQIYVDDIIFGSTN SLCKEFS  MQ EFEMSMMGELK+FLG+QI Q++ G+++
Sbjct: 182  HNDILLVQIYVDDIIFGSTNDSLCKEFSLDMQSEFEMSMMGELKYFLGLQIKQTQ*GIFI 361

Query: 1404 HQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLL 1456
            +Q+KY KEL+K+F ++  K M+TPM   C L K+++G  +D K YR  IG ++
Sbjct: 362  NQSKYCKELIKRFGMDSAKHMSTPMSTNCYLDKDESGQSIDIKQYRDAIGEVV 520


>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
            (japonica cultivar-group)}, partial (10%)
          Length = 463

 Score =  228 bits (581), Expect = 2e-59
 Identities = 109/153 (71%), Positives = 130/153 (84%)
 Frame = -3

Query: 1174 LAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQE 1233
            +AMQEELNQF+RN+VW LV KP    +IGTKWVFRNKL+E G + RNKARLVA+GY+Q+E
Sbjct: 461  IAMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEE 282

Query: 1234 GIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDL 1293
            GIDY ET+APVARLE IR+LL+Y       LYQMDVKSAFLNG+I+EEVYV+QPPGFE  
Sbjct: 281  GIDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIP 102

Query: 1294 KHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1326
              P HVYKL+K+LYGLKQAPRAWY+R+SNFL++
Sbjct: 101  DKPTHVYKLQKALYGLKQAPRAWYERISNFLLE 3


>TC211311 weakly similar to UP|O24587 (O24587) Pol protein, partial (15%)
          Length = 1213

 Score =  227 bits (578), Expect = 4e-59
 Identities = 121/245 (49%), Positives = 159/245 (64%)
 Frame = +3

Query: 1289 GFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDIL 1348
            GFED + P HV+ +   L  L            +F  + D            R  K+  L
Sbjct: 330  GFEDKERPCHVFMV*NKL*ELGMKG*V------HF*FQMDSPEE*RTPHYSERLKKETFL 491

Query: 1349 IVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKY 1408
            I+ IYVDDIIFG+T+  +CKEF +LM+D FE SM GELKF LG+QI Q   G+++HQ KY
Sbjct: 492  IIHIYVDDIIFGATSKRMCKEFFELMKDGFETSMKGELKFLLGLQIIQKVYGIFIHQEKY 671

Query: 1409 TKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFS 1468
            TK  LK+F++++ K M TPMH +  + K++ G     K Y GMI SL YLT+SRPDI+F 
Sbjct: 672  TKSHLKRFRMDEAKPMATPMHRSTIIDKDEKGNHTS*KEYSGMIDSLSYLTSSRPDIVFV 851

Query: 1469 VCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1528
            VCLCARFQS P+ SH+TAVKRI RYL GTTN  L ++K  ++ L+G+CD  +AGD++ERK
Sbjct: 852  VCLCARFQSYPKISHVTAVKRILRYLVGTTNHCLWFKKRSEFDLLGYCDVYFAGDKVERK 1031

Query: 1529 STSGN 1533
            STS N
Sbjct: 1032 STSRN 1046


>TC213445 
          Length = 705

 Score =  123 bits (308), Expect(2) = 2e-48
 Identities = 57/98 (58%), Positives = 74/98 (75%)
 Frame = +1

Query: 1524 RIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQLLWMKHQLEDYQI 1583
            + +R+STS  C F+G  L+SW SKKQ ++ +STAEAEYISA +   Q+ WM+ QL DY +
Sbjct: 400  KTDRESTSDTCHFIGSALVSWHSKKQNSVVLSTAEAEYISARSYYAQIFWMRQQLFDYGL 579

Query: 1584 NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIR 1621
              + IPI CDNT+AI LSKN IL+SR KHIEI+HHF+R
Sbjct: 580  KLDHIPIRCDNTSAINLSKNHILYSRTKHIEIRHHFLR 693



 Score = 90.1 bits (222), Expect(2) = 2e-48
 Identities = 40/68 (58%), Positives = 52/68 (75%)
 Frame = +2

Query: 1451 MIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDY 1510
            MI S LYL+ SRP I+FSVC+C R+Q++P+ESHL+ +KRI RYL G  NLGL Y K+  Y
Sbjct: 197  MIESFLYLSTSRPHIMFSVCMCVRYQANPKESHLSVIKRIMRYLLGIINLGLWYPKNSSY 376

Query: 1511 KLIGFCDA 1518
             L+G+ DA
Sbjct: 377  NLVGYSDA 400


>BM143109 
          Length = 415

 Score =  171 bits (434), Expect = 2e-42
 Identities = 84/137 (61%), Positives = 107/137 (77%)
 Frame = +1

Query: 1286 QPPGFEDLKHPNHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1345
            QPP  ++ + PNHV+KLKK LYGLKQA RAWY+ LS FL+   F +G+VDT LF      
Sbjct: 4    QPPVRKNSEKPNHVFKLKKVLYGLKQALRAWYELLSKFLLDKGFSKGKVDTNLFI*KKLN 183

Query: 1346 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1405
            DIL+VQIYVDDIIFGSTN SLCK+FS+ MQ+EFEMSMM EL FFLG+QI Q+K G+++ Q
Sbjct: 184  DILLVQIYVDDIIFGSTNDSLCKKFSQDMQNEFEMSMMRELNFFLGLQIKQTKNGIFISQ 363

Query: 1406 TKYTKELLKKFKLEDCK 1422
            +KY K+L+ +F +E+ K
Sbjct: 364  SKYCKDLIHRFGMENDK 414


>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
            (7%)
          Length = 804

 Score =  170 bits (430), Expect = 6e-42
 Identities = 93/222 (41%), Positives = 136/222 (60%), Gaps = 4/222 (1%)
 Frame = +1

Query: 1443 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1502
            VD   +R +IGSL YL  SRP+I F+V L +RF   PR SH+ A KR+ R +KGT   G+
Sbjct: 7    VDVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGV 186

Query: 1503 LY---RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEA 1559
            L+    KS    L+G+ D+D+  D  + KST G      +  ++ +SKKQ  IA+ST EA
Sbjct: 187  LFPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEA 366

Query: 1560 EYISAANCCTQLLWMKHQLEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHH 1618
            EY++A+    Q +WM + LE+ ++     + +  DN +AI L+K+P LH R+KHIE++ H
Sbjct: 367  EYVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFH 546

Query: 1619 FIRDYVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNL 1660
            +IRD V KG + +++   E Q AD+ TKP+ V RF  I   L
Sbjct: 547  YIRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672


>AI959950 
          Length = 466

 Score =  166 bits (421), Expect = 6e-41
 Identities = 84/130 (64%), Positives = 104/130 (79%)
 Frame = -1

Query: 1175 AMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1234
            AMQEEL+QFQ+N+V  LV  P +K ++G KW+F NKL+E G+V R KARLVA+GYSQQEG
Sbjct: 391  AMQEELDQFQKNNV*KLVKLPKRKKVVGVKWIFCNKLDEDGKVVRYKARLVAKGYSQQEG 212

Query: 1235 IDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLK 1294
            IDY +TFA VARLE I +LLS+A    + LYQMDVKSAFLNG+I++EVYV+QPPGFE+  
Sbjct: 211  IDYPKTFALVARLEVICILLSFATYSNMKLYQMDVKSAFLNGLIQKEVYVEQPPGFENET 32

Query: 1295 HPNHVYKLKK 1304
               HV+KL K
Sbjct: 31   LHQHVFKLNK 2


>BF596801 weakly similar to GP|29423270|g gag-pol polyprotein {Glycine max},
            partial (7%)
          Length = 336

 Score =  159 bits (403), Expect = 7e-39
 Identities = 76/111 (68%), Positives = 91/111 (81%)
 Frame = +3

Query: 1159 EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNEQGEVT 1218
            EPK ++EA+ DD WI+ MQEELNQF+RN+VW LV KP    +IGTKWVFRNKL+E G + 
Sbjct: 3    EPKNIKEAIVDDNWIIVMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIII 182

Query: 1219 RNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDV 1269
            RNKARLVA+GY+Q+EGIDY ET+APVARLEAIR+LL+YA      LYQMDV
Sbjct: 183  RNKARLVAKGYNQEEGIDYEETYAPVARLEAIRMLLAYASIMNFKLYQMDV 335


>CO983516 
          Length = 724

 Score =  152 bits (383), Expect = 2e-36
 Identities = 74/120 (61%), Positives = 92/120 (76%)
 Frame = +2

Query: 1241 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVY 1300
            F PVARLE+IRLLL  A      LYQMDVKSAFLNG + EEVYV+QP GF D  HP+HVY
Sbjct: 365  FHPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPKGFIDPTHPDHVY 544

Query: 1301 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFG 1360
            +LKK+LYGLKQAPRAWY+RL+  L +  + +G +D TLF +   ++++I QIYVDDI+FG
Sbjct: 545  RLKKALYGLKQAPRAWYERLTELLTQQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFG 724


>AI855982 
          Length = 484

 Score =  145 bits (367), Expect = 1e-34
 Identities = 77/157 (49%), Positives = 102/157 (64%)
 Frame = +2

Query: 1131 IIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWD 1190
            IIG       TR   +   + +  +S+IEPK ++EA+ DD WI+AMQEELNQF+RN+VW 
Sbjct: 14   IIGDISKGVTTRHSLKDLCNNMAFVSMIEPKNIKEAIVDDNWIIAMQEELNQFERNNVWK 193

Query: 1191 LVPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1250
            LV KP    +I TKWVFRNKL+E   +  +KARLVA+GY+Q +G+DY  T+A +ARL  I
Sbjct: 194  LVEKPDNYPVI*TKWVFRNKLDEHRIIIIHKARLVAEGYNQVDGLDYEHTYASIARL*VI 373

Query: 1251 RLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQP 1287
             + LSY       LY     SA L+G++  EVYV QP
Sbjct: 374  IMPLSYVYIMNSTLYHYACVSALLHGLLLHEVYVDQP 484


>AI966222 
          Length = 430

 Score =  117 bits (294), Expect(2) = 5e-32
 Identities = 52/88 (59%), Positives = 70/88 (79%)
 Frame = +1

Query: 925  EMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGC 984
            EMART +++N   KHF AE +N  CY+QN+IYIRP+L++T YEL+KGR+PNISYF+ F C
Sbjct: 1    EMARTTLNDNLTPKHF*AEVMNIVCYLQNKIYIRPILKRTPYELWKGRKPNISYFYPFRC 180

Query: 985  TCYILNTKDYLKKFDAKAQRGIFLGYSE 1012
             C+I+NTKD L K D+K+  GIF+ YS+
Sbjct: 181  KCFIINTKDNLGKIDSKSDCGIFIAYSK 264



 Score = 40.4 bits (93), Expect(2) = 5e-32
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +2

Query: 1014 SKAYRVYNSETQCVEESMHVKFDDREPESKTSEQSESNA 1052
            SKA+RVYNS T  +EE++H++F   +P  +  E  ES A
Sbjct: 269  SKAFRVYNSGTLVIEEAIHIRFGKNKPNKELLELDESFA 385


>NP004897 gag-protease polyprotein
          Length = 1923

 Score =  134 bits (338), Expect = 3e-31
 Identities = 143/566 (25%), Positives = 244/566 (42%), Gaps = 25/566 (4%)
 Frame = +1

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWD-ILEDGVDDLDLDEEGAAID----RRIHTPAQKKL 91
           D   + +WK  M +F+  LD   W  +++D      LD EG   D        T  + +L
Sbjct: 49  DGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPTDGLKPEEDWTKEEDEL 228

Query: 92  YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKKVKEAKALMLVHQYEL 151
              + K    +   + +  +  ++  + AK  +  L    EG+ KVK ++  +L  ++E 
Sbjct: 229 ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 408

Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
            +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 409 LKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 588

Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
             L V++L+ SL+  E+ L++  T KKSK++A  S              E EE+  D D+
Sbjct: 589 CNLRVDELIGSLQTFELGLSD-RTEKKSKNLAFVSN------------DEGEEDEYDLDT 729

Query: 272 DEDQSVKMAMLSNK----LEYLARKQK------KFLSKRGSYKNSKKEDQK-------GC 314
           DE  +  + +L  +    L  + R+QK       F  ++GS +  K+ D+K        C
Sbjct: 730 DEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGFQC 906

Query: 315 FNCKKPGHFIVDCPDLQKEKFKGKSMKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
             C+  GH   +CP   K++ KG S+  S                  +D +SE  SD   
Sbjct: 907 HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 1023

Query: 375 ADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
           +D D  A  G                +ED ++  S+I   EL  S +EL    E    + 
Sbjct: 1024SDRDVNALTGRF------------ESAEDSSDTDSEITFDELATSYRELCIKSEKILQQE 1167

Query: 435 TDLKEKYVDLMKQQKSTLLELKASKEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNK 494
             LK+   +L  ++++   E+   K E+ GF  +++  E+  KS+     +  +KGS   
Sbjct: 1168AQLKKVIANLEAEKEAHEEEISELKGEV-GF--LNSKLENMTKSI-----KMLNKGSD-- 1317

Query: 495 HEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
               LD+ +  G              KN G  +G+G++ + +   ++            +
Sbjct: 1318---MLDEVLQLG--------------KNVGNQRGLGFNHKSAGRITM------------T 1410

Query: 553 TFVP-EGTNAVTADQSKSEASGSQAK 577
            FVP + +   T  Q +S   G+Q K
Sbjct: 1411EFVPAKISTGATMSQHRSRHHGTQQK 1488


>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
            partial (34%)
          Length = 407

 Score =  132 bits (332), Expect = 1e-30
 Identities = 66/131 (50%), Positives = 92/131 (69%)
 Frame = -2

Query: 1192 VPKPFQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIR 1251
            VP P  K  +G +WV+  K+   GEV R KARLVA+GY+Q  GIDY +TF+PVA+L  +R
Sbjct: 406  VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227

Query: 1252 LLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPNHVYKLKKSLYGLKQ 1311
            L L+ A      L+Q+D+K+AFL+G +EE++Y++QPPGF        V KL +SLYGLKQ
Sbjct: 226  LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47

Query: 1312 APRAWYDRLSN 1322
            +PRAW+ + S+
Sbjct: 46   SPRAWFGKFSH 14


>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
            (30%)
          Length = 687

 Score =  130 bits (327), Expect = 5e-30
 Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
 Frame = +2

Query: 1511 KLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAMSTAEAEYISAANCCTQ 1570
            +L G+CDAD+AG  ++R+STSG C F+G NL+SW SKKQ  +A S+AEAEY S A    +
Sbjct: 14   QLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVTCE 193

Query: 1571 LLWMKHQLEDYQI-NANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGIL 1629
            L+W+K  L++ +      + +YCDN AA+ ++ NP+ H R KHIEI  HFIR+ +    +
Sbjct: 194  LMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSKEI 373

Query: 1630 DIQFIDTEHQWADIFTKPLSVERFDFIKKNLNMH 1663
              +FI +  Q  DI TK L   +   +   L  +
Sbjct: 374  VTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAY 475


>CO982036 
          Length = 674

 Score =  127 bits (320), Expect = 3e-29
 Identities = 72/201 (35%), Positives = 118/201 (57%), Gaps = 3/201 (1%)
 Frame = -2

Query: 1352 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1411
            +YVD II GS+  +L +  +  +   F + ++G+L +F+ I++    + ++  +T   + 
Sbjct: 640  VYVDIIITGSS-CTLIQNLTSKLNSSFPLKLLGKLDYFVEIEVKSMPDLLFSLRTSIFEI 464

Query: 1412 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1471
              +K + +  + +++PM  TC LSK D+        YR ++G+L Y T  RP+I F+V  
Sbjct: 463  FCRKPR*Q-AQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISFAVNK 287

Query: 1472 CARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK---LIGFCDADYAGDRIERK 1528
              +F S+P +SH T VKRI RYLKG+ + GL  + ++  +   + GFCDAD+A    +++
Sbjct: 286  VCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAVDDKR 107

Query: 1529 STSGNCQFLGENLISWASKKQ 1549
            STSG   FLG NLISW   KQ
Sbjct: 106  STSGAAVFLGPNLISWWXXKQ 44


>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
            vinifera}, partial (34%)
          Length = 409

 Score =  124 bits (312), Expect = 3e-28
 Identities = 60/134 (44%), Positives = 88/134 (64%)
 Frame = +3

Query: 1154 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIGTKWVFRNKLNE 1213
            L S+  P T+ EAL   GW  AM +E+   + N  W+LVP P  K  +G +WV+  K+  
Sbjct: 3    LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182

Query: 1214 QGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAF 1273
             G+V R KARLVA+GY+Q  GI+Y +TF+PV  L  +RL L+ A      L+Q+D+K+AF
Sbjct: 183  NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362

Query: 1274 LNGVIEEEVYVKQP 1287
            L+G +EE++Y++QP
Sbjct: 363  LHGDLEEDIYMEQP 404


>BI321712 
          Length = 399

 Score =  122 bits (307), Expect = 1e-27
 Identities = 58/124 (46%), Positives = 85/124 (67%)
 Frame = -3

Query: 1352 IYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKE 1411
            +YVDD+IF   N S+ +EF K M +EFEM+ MG + ++LGI++ Q  +G+++ Q  Y KE
Sbjct: 379  LYVDDLIFTGNNPSMFEEFKKDMSNEFEMTDMGLMAYYLGIEVKQEDKGIFITQEGYAKE 200

Query: 1412 LLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCL 1471
            +LKKFK++D   + TPM     LSK + G  VD  LY+ +IGSL YLT +RPDIL+ V +
Sbjct: 199  VLKKFKMDDANPVGTPMECGSKLSKHEKGENVDPTLYKSLIGSLRYLTCTRPDILYVVGV 20

Query: 1472 CARF 1475
             +R+
Sbjct: 19   VSRY 8


>BG508993 
          Length = 374

 Score =  120 bits (301), Expect = 5e-27
 Identities = 55/123 (44%), Positives = 83/123 (66%), Gaps = 1/123 (0%)
 Frame = +1

Query: 1495 KGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKKQATIAM 1554
            KGT + GL Y  S +YKL+GFCD+D+AGD  +RKST+G   F+G+ + +W+SKKQ  + +
Sbjct: 4    KGTIDFGLFYSPSNNYKLVGFCDSDFAGDVDDRKSTTGFVFFMGDCVFTWSSKKQGIVTL 183

Query: 1555 STAEAEYISAANCCTQLLWMKHQLEDYQ-INANSIPIYCDNTAAICLSKNPILHSRAKHI 1613
             T EAEY++A +C    +W++  LE+ Q +   S  IY DN +A  L+KN + H R+KHI
Sbjct: 184  FTCEAEYVAATSCTCHAIWLRRLLEELQLLQKESTKIYVDNRSAQELAKNSVFHERSKHI 363

Query: 1614 EIK 1616
            + +
Sbjct: 364  DTR 372


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.314    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,453,835
Number of Sequences: 63676
Number of extensions: 905088
Number of successful extensions: 4189
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 4025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4140
length of query: 1667
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1557
effective length of database: 5,635,272
effective search space: 8774118504
effective search space used: 8774118504
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)