BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147434.12 - phase: 0
(707 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203512 weakly similar to PIR|C86287|C86287 F9L1.24 protein - A... 166 4e-41
TC203476 weakly similar to PIR|C86287|C86287 F9L1.24 protein - A... 135 5e-32
TC228097 122 7e-28
TC228098 114 1e-25
CO982038 103 2e-22
TC203507 88 1e-17
TC219449 82 6e-16
CO978969 81 1e-15
AW756548 73 5e-13
BM092850 71 1e-12
AW703741 66 6e-11
BI969375 65 1e-10
AW201249 64 2e-10
BM086209 57 4e-08
TC213060 54 2e-07
BM085708 54 2e-07
AW102128 42 0.001
AI901159 37 0.023
BU761290 34 0.25
BI945220 31 1.6
>TC203512 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (9%)
Length = 988
Score = 166 bits (419), Expect = 4e-41
Identities = 92/329 (27%), Positives = 167/329 (49%), Gaps = 1/329 (0%)
Frame = +3
Query: 202 YFKSDCVRVALTTDCWTSGQNFSYMTLTAHFINNDWKYEKRILSFCTVPNHKGDT-IGRK 260
YF RV LT D WTS Q+ Y+ +T HF+++DWK ++RIL+ P D+ +
Sbjct: 18 YFDGLPGRVCLTLDVWTSSQSVGYVFITGHFVDSDWKLQRRILNVVMEPYPNSDSALSHA 197
Query: 261 VEEILKEWGIRNVSTITVDNASSNDVAVAYLKKRINNMGGLMGDGSFFHLRCCAHILNLV 320
V + +W S ++VA+ L+ + L+ +G C A L+ V
Sbjct: 198 VAVCISDWNFEGKLFSITCGPSLSEVALGNLRPLLFVKNPLILNGQLLIGNCIAQTLSSV 377
Query: 321 VGDGLKQNELSISSIRNSVRFVRSSPQRSAKFKECIEFARITCKKMLCLDVQTRWNTAYL 380
D L L++ IR+SV++V++S KF + + ++ ++ L +D QT+WNT Y
Sbjct: 378 ANDLLSSVHLTVKKIRDSVKYVKTSESHEEKFLDLKQQLQVPSERNLFIDDQTKWNTTYQ 557
Query: 381 MLDGAEKFQPAFEKLEGEDSGYLEFFGEAGPPSIHDWENVRCFVRFLKIFYDATKEFSSS 440
ML A + Q F L+ D Y G PS+ DW+ V +LK +DA +++
Sbjct: 558 MLVAASELQEVFSCLDTSDPDY------KGAPSMQDWKLVETLCTYLKPLFDAANILTTA 719
Query: 441 QGVSLHKAFHQLASVHCELKRSAMNLNTVLASMGSDMKQKYNKYWGKIENINKLIYFGVI 500
++ FH++ + +L R+ ++ + ++++ M+QK +KYW ++ + ++ V+
Sbjct: 720 THPTVITFFHEVWKLQLDLSRAVVSEDPFISNLTKPMQQKIDKYW---KDCSLVLAIAVV 890
Query: 501 LDPRYKFSYVEWCFNDMYGDQPTFFTDLI 529
+DPR+K VE+ F +YG+ + ++
Sbjct: 891 MDPRFKMKLVEFSFTKIYGEDAHEYVKIV 977
>TC203476 weakly similar to PIR|C86287|C86287 F9L1.24 protein - Arabidopsis
thaliana {Arabidopsis thaliana;} , partial (19%)
Length = 1227
Score = 135 bits (341), Expect = 5e-32
Identities = 83/288 (28%), Positives = 152/288 (51%), Gaps = 9/288 (3%)
Frame = +1
Query: 419 NVRCFVRFLKIFYDATKEFSSSQGVSLHKAFHQLASVHCELKRSAMNLNTVLASMGSDMK 478
+V +LK +DA +++ ++ FH++ + +L R+ +N + ++++ M+
Sbjct: 154 SVETLCTYLKPLFDAANILTTTTHTTVITFFHEVWKLQLDLSRAIVNEDPFISNLTKPMQ 333
Query: 479 QKYNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGDQPTFFTDLIAMIHTQLFK 538
QK +KYW ++ + ++ V++DPR+K VE+ F +YG+ + + ++ + +
Sbjct: 334 QKIDKYW---KDCSVVLAIAVVMDPRFKMKLVEFSFTKIYGEDAH---EYVKIVDDGIHE 495
Query: 539 LFNWY-------KDAYDQQHNSG-HPSASPSESSYVSENVIPAEVPSHLARAEAFKEHLK 590
LF+ Y AY ++ N+G HP A S + +P + F ++
Sbjct: 496 LFHEYVTLPLPLTPAYAEEGNAGSHPRAGESPGGTL--------MPDN--GLTDFDVYIM 645
Query: 591 LKESIVKKNELERYLDEERAEDV-NFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASE 649
S K+EL++YL+E V +FD+L WK N +YP LS M RD+L+ PVS+V E
Sbjct: 646 ETSSHQMKSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVSSVPPE 825
Query: 650 SAFSTGGRVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINEEF 697
S F T + +D YRSSL P+ EA++CA++W++ + + + EF
Sbjct: 826 SVFDTKVKEMDQYRSSLRPETVEAIVCAKDWMQYGAAEASNAIVKMEF 969
>TC228097
Length = 832
Score = 122 bits (305), Expect = 7e-28
Identities = 81/217 (37%), Positives = 119/217 (54%), Gaps = 1/217 (0%)
Frame = +2
Query: 477 MKQKYNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGDQPTFFTDLIAMIHTQL 536
MK K+++YW K + + +LDPR+K VE+ F+ +YG ++ +L
Sbjct: 2 MKDKFDRYWSKC---SLPLAVAAVLDPRFKMKLVEYYFSLIYGSTALEHIKEVSDGIKEL 172
Query: 537 FKLFNWYKDAYDQQHNSGHPSASPSESSYVSENVIPAEVPSHLARAEAFKEHLKLKESIV 596
F ++ DQ S P +S +S S + L + F +S++
Sbjct: 173 FNAYSICSTMIDQ--GSALPGSSLPSTSCSSRD--------RLKGFDRFLHETSQGQSMI 322
Query: 597 KKNELERYLDEER-AEDVNFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTG 655
++L++YL+E + +F+IL WK + RYP+LS M RDVL TP+ST+A E AFSTG
Sbjct: 323 --SDLDKYLEEPIFPRNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTMAPELAFSTG 496
Query: 656 GRVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLN 692
GRVLD+ RSSLNP EALIC Q+WL+ N+ DLN
Sbjct: 497 GRVLDSSRSSLNPDTREALICTQDWLQ---NESGDLN 598
>TC228098
Length = 720
Score = 114 bits (285), Expect = 1e-25
Identities = 65/240 (27%), Positives = 117/240 (48%)
Frame = +2
Query: 276 ITVDNASSNDVAVAYLKKRINNMGGLMGDGSFFHLRCCAHILNLVVGDGLKQNELSISSI 335
+T+D+ S +D +K+R++ + +R AH++N + D + I I
Sbjct: 26 VTLDDCSIDDDITLRIKERVSEKRPFLSTRQLLDVRSAAHLVNSIAQDAMDALHEVIQKI 205
Query: 336 RNSVRFVRSSPQRSAKFKECIEFARITCKKMLCLDVQTRWNTAYLMLDGAEKFQPAFEKL 395
R S+R++RSS KF E + ARI +K L LD +W + YLML+ A +++ AF
Sbjct: 206 RESIRYIRSSQVVQGKFNEIAQRARINTQKFLFLDFPVQWKSTYLMLETALEYRSAFSLF 385
Query: 396 EGEDSGYLEFFGEAGPPSIHDWENVRCFVRFLKIFYDATKEFSSSQGVSLHKAFHQLASV 455
+ D Y + + +WE +LK+ + T FS ++ + + F ++ V
Sbjct: 386 QEHDPSY------SASLTDEEWEWASSVTGYLKLLVEITNVFSGNKFPTANIYFPEICDV 547
Query: 456 HCELKRSAMNLNTVLASMGSDMKQKYNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFN 515
H +L + + L+ M MK K+++YW K + + +LDPR+K VE+ ++
Sbjct: 548 HMQLIDWCRSSDDFLSPMALKMKAKFDRYWSK---CSLALAVAAVLDPRFKMKLVEYYYS 718
>CO982038
Length = 675
Score = 103 bits (258), Expect = 2e-22
Identities = 71/203 (34%), Positives = 102/203 (49%), Gaps = 1/203 (0%)
Frame = -1
Query: 480 KYNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGDQPTFFTDLIAMIHTQLFKL 539
K++KYWG I N+ + +LD RYK +E+ + +Y H ++
Sbjct: 672 KFDKYWGVIHNVMGV---ATVLDLRYKMELLEYYYEKLYE-------------HDSFTQV 541
Query: 540 FNWYKDAYDQQHNSGHPSASPSESSYVSENVIPAEVPSHLARAEAFKEHLKLKESIVKKN 599
+ YD + S S V + V L+ + F K S K+
Sbjct: 540 RGIQQLCYDLVSDYQMKMNKDSFGSNVGDVTGSEVVGDALSEYDRFII*KKRARSSYVKS 361
Query: 600 ELERYLDEE-RAEDVNFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGGRV 658
EL+ YL E+ V+FDIL+ WK N +YP L ++ +D+LA VSTVASESAFSTGG+V
Sbjct: 360 ELDNYL*EDVLPRAVDFDILMWWKFNGVKYPTLQAIAKDILAILVSTVASESAFSTGGQV 181
Query: 659 LDTYRSSLNPQMAEALICAQNWL 681
L +RS L EAL+CA++WL
Sbjct: 180 LSPHRSRLQWTTLEALMCARSWL 112
>TC203507
Length = 709
Score = 88.2 bits (217), Expect = 1e-17
Identities = 43/101 (42%), Positives = 65/101 (63%), Gaps = 1/101 (0%)
Frame = +3
Query: 598 KNELERYLDEERAEDV-NFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGG 656
K+EL++YL+E V +FD+L WK N +YP LS M RD+L+ PVS++ ES F T
Sbjct: 120 KSELDQYLEESLLPRVPDFDVLGWWKLNKLKYPTLSKMARDILSVPVSSLPPESVFDTKV 299
Query: 657 RVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNINEEF 697
+ +D YRSSL P+ EAL+CA++W++ + + + EF
Sbjct: 300 KEMDQYRSSLRPETVEALVCAKDWMQYGAAEASNALVKMEF 422
>TC219449
Length = 702
Score = 82.4 bits (202), Expect = 6e-16
Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Frame = +3
Query: 598 KNELERYLDEER-AEDVNFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGG 656
K++L++YL+E +V+F+IL W+ ++ RYPVLS M R+VL P+S VA E AF+
Sbjct: 198 KSDLDKYLEEPLFPRNVDFNILNWWRVHTPRYPVLSMMARNVLGIPMSKVAPELAFNHSA 377
Query: 657 RVLDTYRSSLNPQMAEALICAQNWLKPTL 685
RVLD SSLNP +AL+C+Q+W++ L
Sbjct: 378 RVLDRDWSSLNPATVQALVCSQDWIRSEL 464
>CO978969
Length = 747
Score = 81.3 bits (199), Expect = 1e-15
Identities = 43/98 (43%), Positives = 61/98 (61%), Gaps = 1/98 (1%)
Frame = -3
Query: 598 KNELERYLDEERAEDVN-FDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGG 656
K EL+ YL+E V FDIL W+ N +YP LS + D+L P+ST+++++ F T
Sbjct: 361 KTELDEYLEEPLEPRVQEFDILSWWRINGLKYPTLSRLASDILCMPISTLSADAVFDTEI 182
Query: 657 RVLDTYRSSLNPQMAEALICAQNWLKPTLNQFKDLNIN 694
R +D+YRSSL+ EALIC ++WL Q+K L IN
Sbjct: 181 RKMDSYRSSLDSLTLEALICTKDWL-----QYKSLPIN 83
Score = 31.6 bits (70), Expect = 1.3
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = -1
Query: 477 MKQKYNKYWGKIENINKLIYFGVILDPRYKFSYVEWCFNDMYGDQPTFFTDLIAMIHTQL 536
+++K+++YW + + + V++DPRYK VE F ++G+ + ++ +L
Sbjct: 711 LQEKFDQYWRESCFV---LAVAVVMDPRYKMKLVESTFAKIFGENADQWIRIVEDGLHEL 541
Query: 537 FKLFN 541
F +N
Sbjct: 540 FLEYN 526
>AW756548
Length = 445
Score = 72.8 bits (177), Expect = 5e-13
Identities = 35/140 (25%), Positives = 75/140 (53%), Gaps = 2/140 (1%)
Frame = +3
Query: 184 VARDCFQLFLDENLRLKTYFKSDCVRVALTTDCWTSGQNFSYMTLTAHFINNDWKYEKRI 243
V DC +++ E ++ +++L+ D W + + Y+ LT+++I+ W+ +RI
Sbjct: 18 VEADCIEIYERERKKVNEMLDKLPGKISLSADVWNAVDDAEYLCLTSNYIDESWQLRRRI 197
Query: 244 LSFCTV-PNHKGDTIGRKVEEILKEWGI-RNVSTITVDNASSNDVAVAYLKKRINNMGGL 301
L+F + P+H D + + L +W I R + ++ +D+ S++D + +R+ L
Sbjct: 198 LNFIRIDPSHTEDMVSEAIMTCLMDWDIDRKLFSMILDSCSTSDKIAVRIGERLLQNRFL 377
Query: 302 MGDGSFFHLRCCAHILNLVV 321
+G F +RC A+++N +V
Sbjct: 378 YCNGQLFDIRCAANVINTMV 437
>BM092850
Length = 421
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Frame = +1
Query: 134 SQRFNPAACRKAIALFVLLDEHAFRVVEGEGFKLLCRQLQPLLTIPSRRTVARDCFQLFL 193
S +F+ + +A ++L + +VE GFK+ + LQPL +V C ++
Sbjct: 13 SSKFDQERSQLDLARMIILHGYPLSLVEQVGFKVFVKNLQPLFEFTPNSSVEISCIDIYR 192
Query: 194 DENLRLKTYFKSDCVRVALTTDCWTSGQNFSYMTLTAHFINNDWKYEKRILSFCTV-PNH 252
E ++ R+ L+ + W+S +N Y+ L+AH+I+ +W +K++L+F T+ +H
Sbjct: 193 REKEKVFDMINRLHGRINLSIETWSSTENSLYLCLSAHYIDEEWTLQKKLLNFVTLDSSH 372
Query: 253 KGDTIGRKVEEILKEW 268
D + + + L EW
Sbjct: 373 TEDLLPEVIIKCLNEW 420
>AW703741
Length = 412
Score = 65.9 bits (159), Expect = 6e-11
Identities = 34/135 (25%), Positives = 65/135 (47%)
Frame = +3
Query: 351 KFKECIEFARITCKKMLCLDVQTRWNTAYLMLDGAEKFQPAFEKLEGEDSGYLEFFGEAG 410
KF E ++ ++ L +D Q WN +Y ML A + + F L+ D Y +
Sbjct: 3 KFLELKRHLQVPSERSLFIDDQIHWNRSYQMLVAASELKEVFSCLDTSDPDY-----KGA 167
Query: 411 PPSIHDWENVRCFVRFLKIFYDATKEFSSSQGVSLHKAFHQLASVHCELKRSAMNLNTVL 470
PPS+ DW+ V +LK +DA +++ + FH++ + + R+ + + +
Sbjct: 168 PPSMQDWKLVEILCSYLKPLFDAANILTTTTHPTTIAFFHEVWKLQLDAARAVTSEDPFI 347
Query: 471 ASMGSDMKQKYNKYW 485
+++ M +K +KYW
Sbjct: 348 SNLNKIMSEKIDKYW 392
>BI969375
Length = 510
Score = 65.1 bits (157), Expect = 1e-10
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = -3
Query: 598 KNELERYLDEERAEDV-NFDILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGG 656
K E+++ L+E V + D+L W+ N+ + LS M RD+L+TPV T A +S +
Sbjct: 373 KYEIDQCLEESLLPRVPHSDVLAWWEINTIKCLTLSKMGRDILSTPVFTGALDSVCYSKS 194
Query: 657 RVLDTYRSSLNPQMAEALICAQNWL 681
+ +D YRSSL P+ EAL+CA+ W+
Sbjct: 193 KEIDEYRSSLRPETLEALVCAKGWM 119
>AW201249
Length = 405
Score = 63.9 bits (154), Expect = 2e-10
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +1
Query: 233 INNDWKYEKRILSFCTVPNHKGDTIGRKVEEILKEWGIRNVSTITVDNASSNDVAVAYLK 292
I+ ++ K+IL FC + +HKG+T +E LKE GI+ + ITVDNAS+N VA++YL
Sbjct: 7 IDEVFRLHKKILKFCLIGDHKGETTWIALENCLKE*GIQKICCITVDNASANSVAISYLS 186
Query: 293 KRIN--NMGGLMGDGSFFHLRCCAH 315
+ ++ N L+ + F H++ AH
Sbjct: 187 RGLSV*NDHTLLNE-EFIHMQRSAH 258
>BM086209
Length = 389
Score = 56.6 bits (135), Expect = 4e-08
Identities = 33/108 (30%), Positives = 51/108 (46%), Gaps = 2/108 (1%)
Frame = +1
Query: 180 SRRTVARDCFQLFLDENLRLKTYFKSDCVRVALTTDCWTSGQNFSYMTLTAHFINNDWKY 239
S + DC ++L E L RV LT D WTS Q +Y+ L HFI+ DW
Sbjct: 10 SFNAIQGDCVTMYLREKQNLLNLIDGIPGRVNLTLDLWTSNQTSAYVFLRGHFIDGDWNL 189
Query: 240 EKRILSFCTVPNHKGD-TIGRKVEEILKEWGIR-NVSTITVDNASSND 285
IL+ VP D ++ + + L +W ++ + T+ +D SN+
Sbjct: 190 HHPILNVFMVPFPDSDGSLNQTIVNCLSDWHLKGRLFTLALDKFFSNE 333
>TC213060
Length = 499
Score = 54.3 bits (129), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +2
Query: 616 DILLSWKQNSCRYPVLSSMVRDVLATPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALI 675
D+L WK NS RYP LS M RD LA ++V E F G +D R + +A++
Sbjct: 131 DVLEWWKVNSTRYPRLSVMARDFLAVQATSVVPEELFCGKGDEIDKQRICMPHDSTQAIL 310
Query: 676 CAQNWLKPTLN-QFKDLNINEE 696
C ++W++ + +FK I+ E
Sbjct: 311 CIKSWIQVGVKFKFKSTEIDYE 376
>BM085708
Length = 428
Score = 54.3 bits (129), Expect = 2e-07
Identities = 35/128 (27%), Positives = 60/128 (46%)
Frame = +2
Query: 332 ISSIRNSVRFVRSSPQRSAKFKECIEFARITCKKMLCLDVQTRWNTAYLMLDGAEKFQPA 391
++ IR ++ +++SS AKF + I +K L LD ++WN+ Y ML A +F+
Sbjct: 38 VNKIRQTIGYIKSSQIILAKFNVMAKEVGILSQKGLFLDNPSQWNSTYSMLVVALEFKDV 217
Query: 392 FEKLEGEDSGYLEFFGEAGPPSIHDWENVRCFVRFLKIFYDATKEFSSSQGVSLHKAFHQ 451
L+ D+ Y E +WE V +LK+F + F+ S+ + + F +
Sbjct: 218 LILLQENDTAYKVCLSEV------EWERVTAVTSYLKLFVEVINVFTKSKYPTANIYFPE 379
Query: 452 LASVHCEL 459
L V L
Sbjct: 380 LCDVKLHL 403
>AW102128
Length = 426
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 633 SMVRDVLATPVSTVASESAFSTGGRVLDTYRSSLNPQMAEALICAQNWLK 682
+M RD+L+ PV+++ ES T +D Y SL PQ +AL+CA + ++
Sbjct: 8 TMARDILSVPVTSLPPESVCDTEVT*MDQYLRSLRPQTEQALVCATDCMR 157
>AI901159
Length = 388
Score = 37.4 bits (85), Expect = 0.023
Identities = 15/49 (30%), Positives = 28/49 (56%), Gaps = 1/49 (2%)
Frame = +1
Query: 221 QNFSYMTLTAHFINNDWKYEKRILSFCTVPNHKGDT-IGRKVEEILKEW 268
Q+ Y+ +T HF+++DWK ++RIL+ P D+ + V + +W
Sbjct: 190 QSVGYVFITGHFVDSDWKLQRRILNVVMEPYPNSDSALSHAVAVCISDW 336
>BU761290
Length = 441
Score = 33.9 bits (76), Expect = 0.25
Identities = 28/128 (21%), Positives = 50/128 (38%), Gaps = 8/128 (6%)
Frame = +2
Query: 59 RRTSPAWDHFIKLPDEPEPTAACIHCHKRYLCDPKTHGTSNLLAHSKVCFKNPQNDPTQA 118
R S W HF K+ C +C K+ L +GT +L H+++C +
Sbjct: 83 RLKSKIWQHFKKIKVNGLDKTECKYC-KKLLGGKSKNGTKHLWQHNEICVQYK------- 238
Query: 119 SLMFSNGEGGT------LVAASQRFNPAA--CRKAIALFVLLDEHAFRVVEGEGFKLLCR 170
+F G G +V Q R+ +A +++ E+ + + GF+
Sbjct: 239 --IFMRGMKGQAFLTPKVVQGKQELGAGTYDAREQLAKAIIMHEYPLSIGDRLGFRRYSA 412
Query: 171 QLQPLLTI 178
LQP+ +
Sbjct: 413 ALQPVFQV 436
>BI945220
Length = 415
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/59 (33%), Positives = 29/59 (48%)
Frame = -3
Query: 5 MESISQNLSSTLTSGSANVAEPTEQVAVATQVPVVGLPPLPCLAKRRKPNAGGPRRTSP 63
M + + N SST TS + V+ Q+ TQ+ V P L + R P+ PR T+P
Sbjct: 293 MNTPTSNPSSTTTSMLSTVS--MSQIKXTTQIXKVKHAITPNLTQTRSPSCSSPRSTTP 123
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,463,844
Number of Sequences: 63676
Number of extensions: 498123
Number of successful extensions: 2626
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2613
length of query: 707
length of database: 12,639,632
effective HSP length: 104
effective length of query: 603
effective length of database: 6,017,328
effective search space: 3628448784
effective search space used: 3628448784
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC147434.12