BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147364.11 - phase: 0
(184 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231442 similar to UP|Q9FYB0 (Q9FYB0) SC35-like splicing factor... 45 4e-09
BQ611926 48 3e-06
BU550991 similar to GP|22022315|dbj transformer-2b {Oryzias lati... 44 3e-05
BE661837 similar to GP|20161628|dbj B1065G12.30 {Oryza sativa (j... 35 0.020
TC224531 similar to UP|VATD_ARATH (Q9XGM1) Vacuolar ATP synthase... 33 0.058
BE803700 similar to PIR|S56117|S561 spermatid-specific protein T... 33 0.076
TC216081 similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial ... 32 0.13
TC214113 similar to UP|Q7X9S5 (Q7X9S5) Fiber protein Fb15, parti... 32 0.13
BG839863 weakly similar to GP|1255111|gb| pR57 {rat cytomegalovi... 31 0.29
BF068779 31 0.38
TC219631 weakly similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {... 30 0.64
BI317298 similar to GP|5139695|dbj| expressed in cucumber hypoco... 30 0.84
TC216376 30 0.84
AW830877 30 0.84
TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase... 29 1.1
TC218727 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosph... 29 1.1
TC231030 similar to UP|PCD7_MOUSE (Q9WTY1) Programmed cell death... 29 1.1
BQ785559 29 1.4
AI461230 weakly similar to GP|1763234|gb|A 3-hydroxy-3-methylglu... 29 1.4
TC208857 weakly similar to UP|Q84KG8 (Q84KG8) Fatty acid delta-6... 29 1.4
>TC231442 similar to UP|Q9FYB0 (Q9FYB0) SC35-like splicing factor SCL28, 28
kD, partial (33%)
Length = 814
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 114 PLVSRTREGPPVPRRMAEVQLMRRIWCLADLQAPGVMIAVLQGLVHGHT 162
P+V RT P V RM V + RRI D + G MIAVLQGL+HG T
Sbjct: 371 PVVGRTTRSPLVSGRMVGVLMTRRIRHPVDPRVLGTMIAVLQGLIHGDT 517
Score = 43.5 bits (101), Expect(2) = 4e-09
Identities = 35/83 (42%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 34 VGMIIPQ-SDQDLILGLSLPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRT 92
VGMII SDQDLILGLSLPV+G R T PLV G+L R + P+ PR
Sbjct: 314 VGMIIILLSDQDLILGLSLPVVG--------RTTRSPLVSGRMVGVLMTRRIRHPVDPRV 469
Query: 93 TEGPLMPRTMEGLLVPRTTEGPL 115
M ++GL+ T L
Sbjct: 470 L--GTMIAVLQGLIHGDTVHADL 532
Score = 33.5 bits (75), Expect(2) = 4e-09
Identities = 20/31 (64%), Positives = 21/31 (67%)
Frame = +1
Query: 1 MRVTTSHGSGRSGGGGSRRRARSRSPRRSRY 31
MRV T GSGR GGG RRR R+RSPR Y
Sbjct: 184 MRVNT-RGSGRHGGG--RRRNRTRSPRPRSY 267
>BQ611926
Length = 438
Score = 47.8 bits (112), Expect = 3e-06
Identities = 27/49 (55%), Positives = 30/49 (61%)
Frame = +3
Query: 114 PLVSRTREGPPVPRRMAEVQLMRRIWCLADLQAPGVMIAVLQGLVHGHT 162
P+V RT P V RM V + RRI AD + G MI VLQGLVHGHT
Sbjct: 174 PVVGRTTGSPLVLGRMVGVLMTRRIRHPADPRVLGAMIVVLQGLVHGHT 320
Score = 45.4 bits (106), Expect = 1e-05
Identities = 35/83 (42%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 34 VGMIIPQ-SDQDLILGLSLPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPRT 92
VGMII SDQDLILGLSLPV+GR TG PLV G+L R + P PR
Sbjct: 117 VGMIIILLSDQDLILGLSLPVVGRTTGS--------PLVLGRMVGVLMTRRIRHPADPRV 272
Query: 93 TEGPLMPRTMEGLLVPRTTEGPL 115
++ ++GL+ T L
Sbjct: 273 LGAMIV--VLQGLVHGHTVHADL 335
>BU550991 similar to GP|22022315|dbj transformer-2b {Oryzias latipes},
partial (7%)
Length = 681
Score = 44.3 bits (103), Expect = 3e-05
Identities = 26/49 (53%), Positives = 29/49 (59%)
Frame = -3
Query: 114 PLVSRTREGPPVPRRMAEVQLMRRIWCLADLQAPGVMIAVLQGLVHGHT 162
P+V RT P V RM V + RRI AD + G MI VLQ LVHGHT
Sbjct: 412 PVVGRTTGSPLVLGRMVGVLMTRRIRHPADPRVLGAMIVVLQCLVHGHT 266
Score = 44.3 bits (103), Expect = 3e-05
Identities = 31/59 (52%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = -3
Query: 34 VGMIIPQ-SDQDLILGLSLPVMGRMTGPLVPRMTEVPLVPRMAEGLLAPRMMEGPLVPR 91
VGMII SDQDLILGLSLPV+GR TG PLV G+L R + P PR
Sbjct: 469 VGMIIILLSDQDLILGLSLPVVGRTTGS--------PLVLGRMVGVLMTRRIRHPADPR 317
>BE661837 similar to GP|20161628|dbj B1065G12.30 {Oryza sativa (japonica
cultivar-group)}, partial (7%)
Length = 655
Score = 35.0 bits (79), Expect = 0.020
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 2 RVTTSHGSGRSGGGGS-RRRARSRSPRRSRYRWV 34
R T + G GGGS RRR+ SRS +R R+RW+
Sbjct: 396 RFTIARRGGCCAGGGSFRRRSSSRSTKRHRFRWI 295
>TC224531 similar to UP|VATD_ARATH (Q9XGM1) Vacuolar ATP synthase subunit D
(V-ATPase D subunit) (Vacuolar proton pump D subunit) ,
partial (42%)
Length = 374
Score = 33.5 bits (75), Expect = 0.058
Identities = 25/83 (30%), Positives = 34/83 (40%)
Frame = +1
Query: 9 SGRSGGGGSRRRARSRSPRRSRYRWVGMIIPQSDQDLILGLSLPVMGRMTGPLVPRMTEV 68
+G G SRR ARSR+P R G + P ++D + + GR +V R
Sbjct: 46 AGSGQGASSRRHARSRAPEEEERRAHGAVPPDPEEDRV---HERIYGRHHENVVVRAHRG 216
Query: 69 PLVPRMAEGLLAPRMMEGPLVPR 91
+ R PR E L PR
Sbjct: 217 KIRRRRQHQARRPRKRERSLPPR 285
>BE803700 similar to PIR|S56117|S561 spermatid-specific protein T2 precursor
- longfin squid, partial (14%)
Length = 418
Score = 33.1 bits (74), Expect = 0.076
Identities = 16/30 (53%), Positives = 18/30 (59%), Gaps = 3/30 (10%)
Frame = -3
Query: 7 HGSGRSGGGG---SRRRARSRSPRRSRYRW 33
H GR GGG SRR+ R R RR R+RW
Sbjct: 302 HPGGRRGGGACSRSRRKPRHRRSRRRRWRW 213
>TC216081 similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (22%)
Length = 1046
Score = 32.3 bits (72), Expect = 0.13
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -1
Query: 8 GSGRSGGGGSRRRARSRSPRRSRYR 32
GS R GGGG RRRA R RR R R
Sbjct: 398 GSNRGGGGGPRRRACGRGRRRWRER 324
>TC214113 similar to UP|Q7X9S5 (Q7X9S5) Fiber protein Fb15, partial (80%)
Length = 795
Score = 32.3 bits (72), Expect = 0.13
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Frame = +1
Query: 6 SHGSGRSGGGGSR---RRARSRSPRRSRY-RW 33
S +GR+GGGG+R +R R RS RRSR+ RW
Sbjct: 145 SGAAGRAGGGGARGGEQRGRRRSCRRSRHGRW 240
>BG839863 weakly similar to GP|1255111|gb| pR57 {rat cytomegalovirus
Maastricht} [Rat cytomegalovirus Maastricht], partial
(3%)
Length = 707
Score = 31.2 bits (69), Expect = 0.29
Identities = 17/30 (56%), Positives = 18/30 (59%)
Frame = +3
Query: 2 RVTTSHGSGRSGGGGSRRRARSRSPRRSRY 31
R T G GR GG G RRR R R PRR R+
Sbjct: 204 RGTRRFGPGR-GGSGRRRRRRRREPRRWRH 290
>BF068779
Length = 408
Score = 30.8 bits (68), Expect = 0.38
Identities = 15/20 (75%), Positives = 15/20 (75%)
Frame = -1
Query: 13 GGGGSRRRARSRSPRRSRYR 32
GGGG RRRAR RS RR R R
Sbjct: 270 GGGGRRRRARFRSRRRFRRR 211
>TC219631 weakly similar to GB|AAD55277.1|5882724|F25A4 F25A4.4 {Arabidopsis
thaliana;} , partial (87%)
Length = 1216
Score = 30.0 bits (66), Expect = 0.64
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = -2
Query: 8 GSGRSGGGGSRRRARSRSPRRSRYRWVGMI 37
G GGGG R R R R R R RW+ MI
Sbjct: 210 GEKERGGGGLRGRGRRRLR*RGRTRWLPMI 121
>BI317298 similar to GP|5139695|dbj| expressed in cucumber hypocotyls
{Cucumis sativus}, partial (34%)
Length = 381
Score = 29.6 bits (65), Expect = 0.84
Identities = 18/32 (56%), Positives = 20/32 (62%)
Frame = -1
Query: 4 TTSHGSGRSGGGGSRRRARSRSPRRSRYRWVG 35
T HGSGR G+RRR R R RRS RW+G
Sbjct: 195 THRHGSGRR-AHGNRRRRRIRRRRRS-CRWLG 106
>TC216376
Length = 2017
Score = 29.6 bits (65), Expect = 0.84
Identities = 14/26 (53%), Positives = 15/26 (56%)
Frame = -1
Query: 8 GSGRSGGGGSRRRARSRSPRRSRYRW 33
G G SG G R R RSR RS +RW
Sbjct: 601 GFGASGNQGER*RPRSRKRSRSTWRW 524
>AW830877
Length = 429
Score = 29.6 bits (65), Expect = 0.84
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 83 MMEGPLVPRTTEGP-LMPRTMEGLLVPRTTEGPLVSRTREGP--PVPRRMA 130
+ GP +PR GP L PR + + R ++G L R R P P PRR+A
Sbjct: 52 LQHGPCLPRPDPGPHLPPRPLRRAI--RRSQGRLRQRPRPEPLLPRPRRLA 198
>TC208023 weakly similar to UP|Q8LC07 (Q8LC07) Carnitine racemase like
protein, partial (95%)
Length = 1133
Score = 29.3 bits (64), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 13 GGGGSRRRARSRSPRRSRYRW 33
GG RRR R R+PR+ R RW
Sbjct: 401 GGRWRRRRKRRRAPRKGRSRW 339
>TC218727 similar to UP|Q8LSC5 (Q8LSC5) Geranylgeranyl pyrophosphate
synthase, partial (55%)
Length = 892
Score = 29.3 bits (64), Expect = 1.1
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 2/108 (1%)
Frame = -1
Query: 23 SRSPRRSRYRWVGMIIPQSDQDLILGLS--LPVMGRMTGPLVPRMTEVPLVPRMAEGLLA 80
S+ PRRS + PQ G +P P P + PLVP A +
Sbjct: 331 SQPPRRSHLPLLPPTQPQLPATPPFGARE*IPASQAPHSPPPPNLYP-PLVPPQALPYRS 155
Query: 81 PRMMEGPLVPRTTEGPLMPRTMEGLLVPRTTEGPLVSRTREGPPVPRR 128
++ L PR T T+ +PR +R R GPP PRR
Sbjct: 154 TSLIPQSLEPRVTA------TLPPWTLPRARTRRRGARRRRGPPRPRR 29
>TC231030 similar to UP|PCD7_MOUSE (Q9WTY1) Programmed cell death protein 7
(ES18), partial (5%)
Length = 493
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 5 TSHGSGRSGGGGSRRRARSRSPRRSRYRWV-GMII 38
+ G G GGG RRRAR+ R RW+ G+++
Sbjct: 129 SGRGGGSCGGGWKRRRARNMRRVLRRRRWMTGLVV 25
>BQ785559
Length = 422
Score = 28.9 bits (63), Expect = 1.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -2
Query: 6 SHGSGRSGGGGSRRRARSRSPRRSRYRW 33
SHGS GSR RS RRSR RW
Sbjct: 376 SHGSRPQRPRGSRSSRAGRSRRRSRRRW 293
>AI461230 weakly similar to GP|1763234|gb|A 3-hydroxy-3-methylglutaryl
coenzyme A reductase {Camptotheca acuminata}, partial
(10%)
Length = 187
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 7 HGSGR-SGGGGSRRRARSRSPRRSRYRWVG 35
+GS R SGGGGSR R RS R+R RW G
Sbjct: 89 YGSSRASGGGGSRPRRRS---PRTRGRW*G 9
>TC208857 weakly similar to UP|Q84KG8 (Q84KG8) Fatty acid delta-6 desaturase,
partial (21%)
Length = 648
Score = 28.9 bits (63), Expect = 1.4
Identities = 18/27 (66%), Positives = 19/27 (69%), Gaps = 2/27 (7%)
Frame = -1
Query: 8 GSGRSGGGGSRRRARSRSPR--RSRYR 32
G GR GGGG+RRR R RS R RSR R
Sbjct: 177 GGGRRGGGGARRR-RRRSCRGWRSRRR 100
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.141 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,346,910
Number of Sequences: 63676
Number of extensions: 100486
Number of successful extensions: 1409
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of query: 184
length of database: 12,639,632
effective HSP length: 91
effective length of query: 93
effective length of database: 6,845,116
effective search space: 636595788
effective search space used: 636595788
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Medicago: description of AC147364.11