TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147363.1 - phase: 0 /pseudo
         (427 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC234828                                                              105  3e-23
CD487724                                                               39  0.004
CO981082                                                               30  2.7
TC219842 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Frag...    29  3.5
TC214169 similar to UP|Q8LF25 (Q8LF25) DNA-damage inducible prot...    29  3.5
TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, p...    28  6.0
TC222824 weakly similar to GB|AAA98791.1|212879|CHKVITB vitellog...    28  6.0
TC217480 weakly similar to GB|AAM78037.1|21928017|AY125527 AT3g4...    28  6.0

>TC234828 
          Length = 857

 Score =  105 bits (263), Expect = 3e-23
 Identities = 55/125 (44%), Positives = 75/125 (60%)
 Frame = +3

Query: 278 RVFALTGTQTENEDRLIIGTCYINNTPLVAIIDIGATHCFIAFDCASTLGLDMSNMNGEM 337
           RVFA++G++    D LI G C I +  L  + D GATH FI+  C   LGL  + +  +M
Sbjct: 132 RVFAMSGSEAAASDDLIRGKCLIADKLLDVLYDSGATHSFISHACVERLGLCATELPYDM 311

Query: 338 VVETPAKGSVTTSLVCLKSSLSMFGRDFEMDLVCLPLSGMYVILGMNWFE*NHVHINYFS 397
           VV TP    VTTS VCLK  + + GR F  DL+CLPL+ + VILGM+W   NH+ ++   
Sbjct: 312 VVSTPTSEPVTTSRVCLKCPIIVEGRSFMADLICLPLAHLDVILGMDWLSTNHIFLDCKE 491

Query: 398 KSVYF 402
           K + F
Sbjct: 492 KMLVF 506


>CD487724 
          Length = 676

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
 Frame = +3

Query: 304 PLVAIIDIGATHCFIAFDCASTLGLDMSNMNGEMVVETPAKGSVTTSLVCLKSSLSMFGR 363
           PLV ++D G+TH F+     S LGL   +    + V       +  + +C    +S+   
Sbjct: 21  PLVYLVDGGSTHNFVQQPLVSQLGLPCRS-TPPLRVMVGNGHHLKCTTICEAIPISIQNI 197

Query: 364 DFEMDLVCLPLSGMYVILGMNWFE-*NHVHINYFSKSVYF 402
           +F + L  LP+ G  ++LG+ W +    + ++Y S S+ F
Sbjct: 198 EFLVHLYVLPIVGANIVLGVQWLKTLGPILVDYNSLSMQF 317


>CO981082 
          Length = 670

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
 Frame = +1

Query: 336 EMVVETPAKGSV-TTSLVCLKSSLSMFGRDFEMDLVC 371
           E+ V +P K    T S++CL S +SMF   F   ++C
Sbjct: 229 ELWVTSPTKAKAFTMSIICLCSCISMFPGHFPFSIIC 339


>TC219842 similar to UP|Q94BY0 (Q94BY0) AT3g49400/F2K15_260 (Fragment),
           partial (3%)
          Length = 773

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -3

Query: 313 ATHCFIAFDCASTLGL---DMSNMNGEMVVETPAKGSVTTSLVCLKSSLSMFGRDFEMDL 369
           A HC I   CAS  G    D+  ++G  ++   A+    TSL   +SSLS+F R F   +
Sbjct: 318 AIHCSI---CASPTGYQQPDLKFVSGLDMLVWKAEKLKPTSLS--RSSLSLFRRSFVHLV 154

Query: 370 VCLPLSGM 377
           +C  ++G+
Sbjct: 153 ICFSMAGL 130


>TC214169 similar to UP|Q8LF25 (Q8LF25) DNA-damage inducible protein
           DDI1-like, partial (90%)
          Length = 1604

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (54%)
 Frame = +2

Query: 300 INNTPLVAIIDIGATHCFIAFDCASTLGL 328
           +N  PL A +D GA    I+  CA  LGL
Sbjct: 764 VNGVPLKAFVDSGAQSTIISKSCAERLGL 850


>TC203304 similar to UP|O82529 (O82529) Ribosomal protein L27a, partial (95%)
          Length = 870

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 5   IILLLSREDMTPMEPRRGLRRSREFFVLCNALKFRRCDLV 44
           I LLL R  + P  PRR LR+    F   + L+F+ C L+
Sbjct: 372 ISLLLLRPSLFPRSPRRRLRKPVALFF--SPLRFKNCFLI 485


>TC222824 weakly similar to GB|AAA98791.1|212879|CHKVITB vitellogenin {Gallus
           gallus;} , partial (17%)
          Length = 703

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 264 GSQCKQPKKAPTIGRVFALTGTQTENEDRLIIGTCYINNTP 304
           GS+C Q  KA T+G+  A TG Q   E+     T Y+N  P
Sbjct: 258 GSECFQASKAQTVGQEMA-TGNQEAKEETPGF-TVYVNRRP 374


>TC217480 weakly similar to GB|AAM78037.1|21928017|AY125527
           AT3g46450/F18L15_170 {Arabidopsis thaliana;} , partial
           (34%)
          Length = 950

 Score = 28.5 bits (62), Expect = 6.0
 Identities = 13/45 (28%), Positives = 27/45 (59%)
 Frame = -2

Query: 363 RDFEMDLVCLPLSGMYVILGMNWFE*NHVHINYFSKSVYFSSVEE 407
           + ++++L CL LSG+  I G+ ++     + N   K+ Y+SS ++
Sbjct: 784 KGYKLNLTCLALSGLVAITGIKYYS-TKSYKNPKYKNAYYSSSQQ 653


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.343    0.151    0.478 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,231,590
Number of Sequences: 63676
Number of extensions: 251161
Number of successful extensions: 2040
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2039
length of query: 427
length of database: 12,639,632
effective HSP length: 100
effective length of query: 327
effective length of database: 6,272,032
effective search space: 2050954464
effective search space used: 2050954464
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 60 (27.7 bits)