BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147202.5 - phase: 0
(389 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 92 3e-19
TC232958 81 7e-16
TC234332 78 6e-15
BI787361 73 2e-13
TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%) 72 3e-13
TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (... 69 4e-12
AI443156 61 8e-10
BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa ... 60 1e-09
AW395660 60 1e-09
TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 57 1e-08
TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like pro... 54 9e-08
TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%) 53 2e-07
TC223618 52 4e-07
BM143422 51 8e-07
TC235149 51 1e-06
TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 50 2e-06
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 47 2e-05
TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g2... 43 3e-04
TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragm... 39 0.004
TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%) 37 0.012
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 92.4 bits (228), Expect = 3e-19
Identities = 84/311 (27%), Positives = 137/311 (44%), Gaps = 15/311 (4%)
Frame = +3
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRLAVTQESREC 81
LP++++TE+LS LPVKS+++ R C W+ +I FV HL +S + L + S
Sbjct: 93 LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFHLNKS--HSSLILRHRSHLY 266
Query: 82 SMDV---IVSPTSLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCLLGLSEDR 138
S+D+ +P LSH L YS + K V GS NGLLC+ +++D
Sbjct: 267 SLDLKSPEQNPVELSHPL------------MCYSNSIK----VLGSSNGLLCISNVADDI 398
Query: 139 EMWLRFWNPATRAISDKLGHYPADFTGGFEVAFGYDNSTDTYKV------VYLQK----G 188
+W F +D+ + FG+ + ++ YK+ V LQK
Sbjct: 399 ALWNPFLRKHRILPADRFHRPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQKRTFDS 578
Query: 189 MTGVFSLGDNVWRNIESFPLGYYLDNR--VHLRDSLNWLGLRSYVDDCDDYDCEYITSIE 246
+++L + W+N+ S P V + SL+WL R + E
Sbjct: 579 QVQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRK------------LQPHE 722
Query: 247 QFMIVALDLRTETCKELLLPRGFDEVPCYEPSLCVLMDCICFSHLVKKTHLVIWKMMDYG 306
+IV+ DL ET E+ LP + ++ + +L C+C + T +W M YG
Sbjct: 723 PDLIVSFDLTRETFHEVPLPVTVN--GDFDMQVALLGGCLCVVE-HRGTGFDVWVMRVYG 893
Query: 307 DDDSWTQLLEI 317
+SW +L +
Sbjct: 894 SRNSWEKLFTL 926
>TC232958
Length = 758
Score = 81.3 bits (199), Expect = 7e-16
Identities = 77/236 (32%), Positives = 107/236 (44%), Gaps = 27/236 (11%)
Frame = +1
Query: 20 IILPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLH--LQRSIQNPRLAVTQE 77
++LP DLITE+L LPVKSL++F+ VC SW LISD F K H L ++ + L +
Sbjct: 55 MVLPQDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHFDLFAALADRILFIASS 234
Query: 78 SREC-SMDVIVSPTSLSHLLENPSKPTTLTND-----PYYSLNDKDCRSVAGSCNGLLCL 131
+ E S+D S L + S +T D PY+ + + GSC G + L
Sbjct: 235 APELRSIDFNAS-------LHDDSASVAVTVDLPAPKPYFHFVE-----IIGSCRGFILL 378
Query: 132 LGLSEDREMWLRFWNPATRAISDKLGHYPADFTGG-----FEVAFGYDNSTDTYKVVYL- 185
LS L WNP T + + P F FGYD STD + VV+
Sbjct: 379 HCLSH-----LCVWNPTT-GVHKVVPLSPIFFNKDAVFFTLLCGFGYDPSTDDFLVVHAC 540
Query: 186 -----QKGMTGVFSLGDNVWRNIES--FPLGYY-LDNRVH-----LRDSLNWLGLR 228
Q +FSL N W+ IE FP ++ NR + L +++WL R
Sbjct: 541 YNPKHQANCAEIFSLRANAWKGIEGIHFPYTHFRYTNRYNQFGSFLNGAIHWLAFR 708
>TC234332
Length = 644
Score = 78.2 bits (191), Expect = 6e-15
Identities = 50/148 (33%), Positives = 78/148 (51%), Gaps = 1/148 (0%)
Frame = +2
Query: 218 LRDSLNWLGLRSYVDDCDDYDCEYITSIEQFMIVALDLRTETCKELLLPRGFDEVPCYEP 277
+R ++NWL L + DY E +T I+ +I + DL+ E+ + LL+P G EVP P
Sbjct: 29 VRGTVNWLALPN---SSSDYQWETVT-IDDLVIFSYDLKNESYRYLLMPDGLLEVPHSPP 196
Query: 278 SLCVLMDCICFSHLVKKTHLVIWKMMDYGDDDSWTQLLEINLQILKKIDEW-SAWVPLHL 336
L VL C+C SH H W M ++G + SWT+ L I+ L + V L +
Sbjct: 197 ELVVLKGCLCLSHRHGGNHFGFWLMKEFGVEKSWTRFLNISYDQLHIHGGFLDHPVILCM 376
Query: 337 SKNYDTLILGSTLEHEFAVYNLRDGSIE 364
S++ ++L + +F +YN RD +IE
Sbjct: 377 SEDDGVVLLENGGHGKFILYNKRDNTIE 460
>BI787361
Length = 423
Score = 73.2 bits (178), Expect = 2e-13
Identities = 48/124 (38%), Positives = 69/124 (54%), Gaps = 7/124 (5%)
Frame = +3
Query: 38 SLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRLAVTQES---RECSMDVIVSPTSLSH 94
+L++FR V +W LI D FVKLHL+RS +N + + ++ R+ V V+P S+
Sbjct: 3 ALMRFRYVSETWNSLIFDPTFVKLHLERSPKNTHVLLEFQAIYDRDVGQQVGVAPCSIRR 182
Query: 95 LLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCLLGLSEDREM----WLRFWNPATR 150
L+ENPS T D +L K S+ GSCNGL+C+ + RE R WNPAT
Sbjct: 183 LVENPS----FTIDDCLTL-FKHTNSIFGSCNGLVCMTKCFDVREFEEECQYRLWNPATG 347
Query: 151 AISD 154
+S+
Sbjct: 348 IMSE 359
>TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%)
Length = 1185
Score = 72.4 bits (176), Expect = 3e-13
Identities = 83/345 (24%), Positives = 144/345 (41%), Gaps = 41/345 (11%)
Frame = +3
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLH--LQRSIQNPRLAVTQESR 79
LP +L++ +LS LP K LL +CVC SW LI+D FV + + S+Q+ + R
Sbjct: 66 LPGELVSNVLSRLPSKVLLLCKCVCKSWFDLITDPHFVSNYYVVYNSLQSQEEHLLVIRR 245
Query: 80 ECSMDVIVSPTSLSHLLENPSK--PTTLTNDPY-YSLNDKDCRSVAGSCNGLLCLLGLSE 136
+ + LS +P K + + N PY Y+ + K + G CNG+ L G
Sbjct: 246 PFFSGLKTYISVLSWNTNDPKKHVSSDVLNPPYEYNSDHKYWTEILGPCNGIYFLEG--- 416
Query: 137 DREMWLRFWNPATRAISDKLGHYPA-----------DFTGGFEVAFGYDNSTDTYKVVYL 185
NP ++ LG + A +T FG+D T+ YKVV L
Sbjct: 417 ---------NPNV-LMNPSLGEFKALPKSHFTSPHGTYTFTDYAGFGFDPKTNDYKVVVL 566
Query: 186 QK-------------GMTGVFSLGDNVWRNIE----SFPLGYYLDNRV--HLRDSLNWLG 226
+ ++SL N WR ++ P+ + +RV + + +W G
Sbjct: 567 KDLWLKETDEREIGYWSAELYSLNSNSWRKLDPSLLPLPIEIWGSSRVFTYANNCCHWWG 746
Query: 227 LRSYVDDCDDYDCEYITSIEQFMIVALDLRTETCKELLLPRGFDEVPCYEPSLCVLMDCI 286
+V++ D Q +++A D+ E+ +++ +P+ D +L +
Sbjct: 747 ---FVEESD---------ATQDVVLAFDMVKESFRKIRVPKIRDSSDEKFGTLVPFEESA 890
Query: 287 CFSHLV-----KKTHLVIWKMMDYGDDDSWTQLLEIN-LQILKKI 325
LV + +W M DY D+ SW + + +Q++ K+
Sbjct: 891 SIGFLVYPVRGTEKRFDVWVMKDYWDEGSWVKQYSVGPVQVIYKL 1025
>TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (13%)
Length = 693
Score = 68.9 bits (167), Expect = 4e-12
Identities = 37/108 (34%), Positives = 62/108 (57%)
Frame = +1
Query: 279 LCVLMDCICFSHLVKKTHLVIWKMMDYGDDDSWTQLLEINLQILKKIDEWSAWVPLHLSK 338
L VL C+C ++ KKTH V+W M DYG +SW +L +++ + + +S P ++S+
Sbjct: 4 LGVLQGCLCMNYDYKKTHFVVWMMKDYGARESWVKL--VSIPYVPNPENFSYSGPYYISE 177
Query: 339 NYDTLILGSTLEHEFAVYNLRDGSIEKTRITNGESSWIYINDYVESLV 386
N + L++ E + +YN RD S + +I +G+ W YVE+LV
Sbjct: 178 NGEVLLM---FEFDLILYNPRDNSFKYPKIESGK-GWFDAEVYVETLV 309
>AI443156
Length = 414
Score = 61.2 bits (147), Expect = 8e-10
Identities = 46/139 (33%), Positives = 71/139 (50%), Gaps = 4/139 (2%)
Frame = +3
Query: 13 SNVASSPIILPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRL 72
SN+A+ LP++++TE+LS LPVKS+++ R C W+ +I F+ HL +S + L
Sbjct: 75 SNMAN----LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFHLNKS--HTSL 236
Query: 73 AVTQESRECSMD----VIVSPTSLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGL 128
+ S+ S+D + +P LSH L YS + K V GS NGL
Sbjct: 237 ILRHRSQLYSLDLKSLLDPNPFELSHPL------------MCYSNSIK----VLGSSNGL 368
Query: 129 LCLLGLSEDREMWLRFWNP 147
LC+ + +D + WNP
Sbjct: 369 LCISNVXDD----IALWNP 413
>BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 394
Score = 60.5 bits (145), Expect = 1e-09
Identities = 42/115 (36%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Frame = +1
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSI-----QNPRLAVTQ 76
LP +++TE+LS LPV+SLL+FR SWK LI LHL RS+ + L V
Sbjct: 40 LPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLASNTSLILRVDS 219
Query: 77 ESRECSMDVIVSPTSLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCL 131
+ + + + P SL+H L S TL GSCNGLLC+
Sbjct: 220 DLYQTNFPTLDPPVSLNHPLMCYSNSITL----------------LGSCNGLLCI 336
>AW395660
Length = 381
Score = 60.5 bits (145), Expect = 1e-09
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Frame = +3
Query: 5 PPKSQQPPSNVASS-PI-ILPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVK 60
PP S Q ++ S P+ LP +L+ E+LS LPVKSLLQFRCVC SW LI D +F+K
Sbjct: 207 PPSSVQKQQGMSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSLIYDPYFMK 380
>TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 449
Score = 57.0 bits (136), Expect = 1e-08
Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Frame = +1
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLH-----------LQRSIQNP 70
LP +LI E+L LPVKSLL+F+CVC S+ LISD FV H + RS
Sbjct: 109 LPQELIREILLRLPVKSLLRFKCVCKSFLSLISDPQFVISHYALAASPTHRLILRSHDFY 288
Query: 71 RLAVTQES--RECSMDVIVSPTSLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGL 128
++ ES + CS DV+ P L PS P +D + + K + GSC GL
Sbjct: 289 AQSIATESVFKTCSRDVVYFPLPL------PSIPCLRLDD--FGIRPK----ILGSCRGL 432
Query: 129 LCL 131
+ L
Sbjct: 433 VLL 441
>TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like protein,
partial (5%)
Length = 1631
Score = 54.3 bits (129), Expect = 9e-08
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 19/195 (9%)
Frame = +3
Query: 142 LRFWNPATRAIS-------DKLGHYPADFTGGFEVAFGYDNSTDTYKVVYLQ-------- 186
+ FWNP+ R + H FG+D+ T YK+V +
Sbjct: 30 IAFWNPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDR 209
Query: 187 --KGMTGVFSLGDNVWRNIESFPLGYYLDNR--VHLRDSLNWLGLRSYVDDCDDYDCEYI 242
+++L N W+ + S P V + +SL+W+ R D D
Sbjct: 210 SFDAQVKLYTLRANAWKTLPSLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPD------ 371
Query: 243 TSIEQFMIVALDLRTETCKELLLPRGFDEVPCYEPSLCVLMDCICFSHLVKKTHLVIWKM 302
+I+A DL + +EL LP +E L +L +C + KT + +W M
Sbjct: 372 ------LIIAFDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTRIDVWVM 533
Query: 303 MDYGDDDSWTQLLEI 317
+Y DSW ++ +
Sbjct: 534 REYNRRDSWCKVFTL 578
>TC228687 similar to UP|Q9FGY4 (Q9FGY4) Gb|AAF30317.1, partial (79%)
Length = 1228
Score = 53.1 bits (126), Expect = 2e-07
Identities = 73/311 (23%), Positives = 125/311 (39%), Gaps = 23/311 (7%)
Frame = +1
Query: 36 VKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRLAVTQESRECSMDVIVSPTSLSHL 95
VKSL +F+ VC W L D +FV+L+ + S +NP + V S ++ +L +
Sbjct: 1 VKSLFRFKTVCKLWYRLSLDKYFVQLYNEVSRKNPMILVEISDSSESKTSLICVDNLRGV 180
Query: 96 LENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCLLGLSEDREMWLRFWNPATRAI--- 152
E + LND+ V SCNGLLC + + ++ NP TR
Sbjct: 181 SE----------FSFIFLNDR--VKVRASCNGLLCCSSIPDKGVFYV--CNPVTREYRLL 318
Query: 153 -SDKLGHYPADFTGGFEVAFGY--DNSTDTYKVVYL-QKGMTG----------VFSLGDN 198
+ H + G G D++ + VV M G VF N
Sbjct: 319 PKSRERHVTRFYPDGEATLVGLACDSAYRKFNVVLAGYHRMFGHRPDGSFICLVFDSELN 498
Query: 199 VWRNIESFPLGYYL----DNRVHLRDSLNWLGLRSYVDDCDDYDCEYITSIEQFMIVALD 254
WR SF ++ + V + ++L+WL + I+ LD
Sbjct: 499 KWRKFVSFQDDHFTHMNKNQVVFVNNALHWL------------------TASSTYILVLD 624
Query: 255 LRTETCKELLLPRGFDEVPCYEPSLCVLMDCI-CFSHL-VKKTHLVIWKMMDYGDDDSWT 312
L E +++ LP ++ C + L+D C S + + + + IW + DY D+ W
Sbjct: 625 LSCEVWRKMQLPY---DLICGTGNRIYLLDFDGCLSVIKISEAWMNIWVLKDYWKDE-WC 792
Query: 313 QLLEINLQILK 323
+ +++L+ ++
Sbjct: 793 MVDKVSLRCIR 825
>TC223618
Length = 444
Score = 52.4 bits (124), Expect = 4e-07
Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Frame = +1
Query: 91 SLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCLLGLSEDREMWLRFWNPATR 150
SLS L N S N P + D + GSCNGLLC + + WNP+ R
Sbjct: 43 SLSSLFNNLSTVCDELNYPVKNKFRHD--GIVGSCNGLLCFAIKGD----CVLLWNPSIR 204
Query: 151 AISDKLGHYPADFTGGFEVAFG--YDNSTDTYKVV--------YLQKGMTGVFSLGDNVW 200
+S K ++ G AFG YD+ + YKVV Y + V+S+ N W
Sbjct: 205 -VSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSEYFIECKVKVYSMATNSW 381
Query: 201 RNIESFPLGY 210
R I+ FP G+
Sbjct: 382 RKIQDFPHGF 411
>BM143422
Length = 424
Score = 51.2 bits (121), Expect = 8e-07
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +1
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRLAVTQESREC 81
LPLDLI +L LPVKS+ +F+CVC SW LISD F H ++ P + S E
Sbjct: 229 LPLDLIELILLKLPVKSVTRFKCVCKSWLSLISDPQFGFSHFDLALAVPSHRLLLRSNEF 408
Query: 82 SMDVI 86
S+ I
Sbjct: 409 SVHSI 423
>TC235149
Length = 435
Score = 50.8 bits (120), Expect = 1e-06
Identities = 29/92 (31%), Positives = 48/92 (51%), Gaps = 3/92 (3%)
Frame = +2
Query: 298 VIWKMMDYGDDDSWTQLLEINLQILKKID---EWSAWVPLHLSKNYDTLILGSTLEHEFA 354
V+W ++G + SWT+LL ++ + + + PL +S+N D L+L + EF
Sbjct: 5 VVWLTREFGVERSWTRLLNVSYEHFRNHGCPPYYRFVTPLCMSENEDVLLLANDEGSEFV 184
Query: 355 VYNLRDGSIEKTRITNGESSWIYINDYVESLV 386
YNLRD I++ + + +DYV SLV
Sbjct: 185 FYNLRDNRIDRIQDFDSYKFSFLSHDYVPSLV 280
>TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 696
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 20 IILPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRS 66
+ LPL+LI E+L PV+S+L+F+CVC SW LISD F L S
Sbjct: 27 VTLPLELIREILLRSPVRSVLRFKCVCKSWLSLISDPQFTHFDLAAS 167
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/48 (45%), Positives = 30/48 (61%)
Frame = +1
Query: 22 LPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQN 69
LP L+ E+L ++ V + LQ RCVC WK L+ D FVK HL S+ +
Sbjct: 196 LPEGLMIEILVWIRVSNPLQLRCVCKRWKSLVVDPQFVKKHLHTSLSD 339
>TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g23880
{Arabidopsis thaliana;} , partial (10%)
Length = 631
Score = 42.7 bits (99), Expect = 3e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = -2
Query: 20 IILPLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRS 66
+ LP ++I E+L LPVKSL F+ VC S LIS+ F K H +R+
Sbjct: 546 LFLPQEIIIEILLRLPVKSLPSFKFVCKS*LSLISNPHFAKWHFERN 406
>TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragment),
partial (5%)
Length = 1232
Score = 38.9 bits (89), Expect = 0.004
Identities = 27/98 (27%), Positives = 42/98 (42%)
Frame = +2
Query: 220 DSLNWLGLRSYVDDCDDYDCEYITSIEQFMIVALDLRTETCKELLLPRGFDEVPCYEPSL 279
+SL+W+ R D D +IVA DL E EL LP +E +
Sbjct: 11 NSLHWVVTRKLEPDQPD------------LIVAFDLTHEIFTELPLPDTGGVGGGFEIDV 154
Query: 280 CVLMDCICFSHLVKKTHLVIWKMMDYGDDDSWTQLLEI 317
+L D +C + + + +W M +Y DSW +L +
Sbjct: 155 ALLGDSLCMTVNFHNSKMDVWVMREYNRGDSWCKLFTL 268
>TC227645 similar to UP|Q9FZK1 (Q9FZK1) F17L21.13, partial (61%)
Length = 1671
Score = 37.4 bits (85), Expect = 0.012
Identities = 62/299 (20%), Positives = 104/299 (34%), Gaps = 17/299 (5%)
Frame = +3
Query: 23 PLDLITELLSFLPVKSLLQFRCVCMSWKILISDSFFVKLHLQRSIQNPRLAVTQESRECS 82
P DL +++ LP+ + +FR VC W +++ F + Q + +NP S
Sbjct: 366 PEDLFEAVIARLPISTFFRFRSVCRQWNSMLNSQSFSQHCTQVTQENPWFYTITHENVNS 545
Query: 83 MDVIVSPTSLSHLLENPSKPTTLTNDPYYSLNDKDCRSVAGSCNGLLCLLGLSEDREMWL 142
+ H + PT L P S C G N +C +E+ +
Sbjct: 546 GAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPV 725
Query: 143 R---FWNPATRAISDKLGHYPADFTGGFEVAFGYDNSTDTYKVVYLQKGMTGVFSLGDNV 199
R W+ ++ T G V G YK++++ G G + + D+V
Sbjct: 726 RSVKVWSRVAVGMT----------TNGNSVGSG-------YKILWV--GCDGEYEVYDSV 848
Query: 200 ---WRNIESFPLGYYLDNRVHLRDSLNWLGLRSYVDDCDDYDCEYITSIEQFMIVALDLR 256
W + P G L ++ R +G Y D IV+ D+
Sbjct: 849 RNSWSRPGNMPAGMKLPLSINFRSQAVSIGSTLYFMRSDPDG-----------IVSYDMA 995
Query: 257 TETCKELLLP-----RGFDEVPCYEPSLCV------LMDCICFSHLVKKTHLVIWKMMD 304
T K+ ++P C + V C+C L K T ++WK +D
Sbjct: 996 TGVWKQYIIPAPLHLTDHTLAECDGQIMLVGLLTKNAATCVCIWELQKMT--LLWKEVD 1166
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,630,300
Number of Sequences: 63676
Number of extensions: 378042
Number of successful extensions: 2098
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of query: 389
length of database: 12,639,632
effective HSP length: 99
effective length of query: 290
effective length of database: 6,335,708
effective search space: 1837355320
effective search space used: 1837355320
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC147202.5