BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.14 + phase: 0
(465 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205268 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 257 2e-77
TC231768 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 180 2e-60
TC220160 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 228 6e-60
BI321835 128 1e-47
TC211860 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 167 9e-42
AW099768 127 1e-29
AI795109 63 2e-10
TC205484 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 45 7e-05
TC205269 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 42 4e-04
TC205485 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 39 0.006
TC205486 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {A... 35 0.054
TC205270 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, pa... 33 0.27
BQ253378 33 0.35
AI442429 32 0.46
TC217984 similar to UP|Q8S9J0 (Q8S9J0) At2g36630/F1O11.26, parti... 32 0.79
CO981269 32 0.79
BI424298 30 1.8
TC225207 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein... 29 3.9
TC213268 29 3.9
BI968560 similar to GP|17064988|gb| g5bf protein {Arabidopsis th... 28 6.7
>TC205268 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (74%)
Length = 1678
Score = 257 bits (657), Expect(2) = 2e-77
Identities = 122/203 (60%), Positives = 161/203 (79%)
Frame = +1
Query: 19 LIMCILVMICNVSLAERVLKEKEPAKFVEKETKGFLKAMVDFLWESGKSSYEPVWPEMKF 78
L + +L++ +VS + V + VE FL +V+FLW S S Y+ WP+++F
Sbjct: 58 LTITLLLISVSVSALQHVSHKNINPTTVETTQTSFLGKVVNFLWSSSGSGYQHTWPDIEF 237
Query: 79 DWKIIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISKCMIMGAALSTV 138
W+II G+IIGFLG+A G+VGGVGGGGIFV ML+LIIGFD KS+TAISKCMI G A +TV
Sbjct: 238 GWRIITGTIIGFLGSAFGTVGGVGGGGIFVTMLSLIIGFDAKSATAISKCMITGGAAATV 417
Query: 139 YYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLLIILFIGTST 198
+YN++ ++PTLDMP+IDYDLALLFQP+L+LGISIGV NV+FADWM+TVLL+I+F+G +T
Sbjct: 418 FYNLKQKHPTLDMPVIDYDLALLFQPVLVLGISIGVAFNVIFADWMITVLLLIIFVGIAT 597
Query: 199 KALIKGINTWKKETMLKKETAKQ 221
KA +KG+ TWKKET++KKETA+Q
Sbjct: 598 KAFLKGVETWKKETIIKKETARQ 666
Score = 50.4 bits (119), Expect(2) = 2e-77
Identities = 79/221 (35%), Positives = 98/221 (43%), Gaps = 4/221 (1%)
Frame = +2
Query: 247 RTFIGKNYHSLYMFGWPF*LFRLLRHTPRLAPLSIGFLISCRFLLLSLLRFLKLYAYTKE 306
R F+GK+ + G + RL + T +L +IG+LI R L +KL T+
Sbjct: 785 RMFVGKHLEFFSLSGSLYLPPRLQKVTQQLVQWNIGYLIYYRSLWH*ERLHIKLCFCTQG 964
Query: 307 QE*LNQRE-RKLKI*RFIKYCYIVQLE**LVWLEGCLV*EVASFWGHSF*KWEFLRR*QV 365
+E* + +E +L R C IV + LV L CLV FW E L R QV
Sbjct: 965 RE**HPKEINELNGERTS*LC-IVPVAYALV*LVACLVLVEVLFWDLFSSS*ESLLRCQV 1141
Query: 366 LHQHFPCFFHPPCQ*CNITI*IASQCLTLHTLFWLQP*LH-LLASMW*EG*LQSLVVHQ- 423
L P F CQ NIT * L L T WL P L LL *E L H+
Sbjct: 1142 LQLLLP*HFQHLCQWWNITF*NGFLFLILFTS-WLYPLLRPLLGKF**ESWLPY*GEHR* 1318
Query: 424 -LLSSY*HPPFS*VQSV*VE*EFRT*L*SWKIMSIWGLKIF 463
LSS PF VQ *V ++T* +I S WGLK F
Sbjct: 1319 SFLSS--PAPFLSVQYH*VVWAYQT*SKELQIKSTWGLKTF 1435
>TC231768 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (21%)
Length = 504
Score = 180 bits (457), Expect(2) = 2e-60
Identities = 87/103 (84%), Positives = 96/103 (92%)
Frame = +2
Query: 127 KCMIMGAALSTVYYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVT 186
KCMIMGA++STVYYN+RLR+PTLDMPLIDYDLAL+FQPMLMLGISIGVICNVMFADWMVT
Sbjct: 2 KCMIMGASISTVYYNLRLRHPTLDMPLIDYDLALIFQPMLMLGISIGVICNVMFADWMVT 181
Query: 187 VLLIILFIGTSTKALIKGINTWKKETMLKKETAKQLEEEPKTG 229
VLLIILFI TSTKA KGI+TWKKET+ KKE +K LE EPK+G
Sbjct: 182 VLLIILFIATSTKATYKGIDTWKKETIAKKEASKLLEAEPKSG 310
Score = 70.5 bits (171), Expect(2) = 2e-60
Identities = 35/62 (56%), Positives = 44/62 (70%)
Frame = +3
Query: 228 TGAYQRVQVKYKMKWCLC*RTFIGKNYHSLYMFGWPF*LFRLLRHTPRLAPLSIGFLISC 287
T Y+ VQ+ + ++ L *+ FIGKNYHSL MFGW + LFRL+R+TP P S GFLI C
Sbjct: 318 TSHYRVVQLSHYLRRPLY*KIFIGKNYHSLRMFGWLYSLFRLVRNTPSPVPSSSGFLIFC 497
Query: 288 RF 289
RF
Sbjct: 498 RF 503
>TC220160 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (29%)
Length = 610
Score = 228 bits (580), Expect = 6e-60
Identities = 106/138 (76%), Positives = 126/138 (90%)
Frame = +3
Query: 58 VDFLWESGKSSYEPVWPEMKFDWKIIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGF 117
V+FLW+ G+S Y+ VWP+M+F W+II+G+I+GF GAA GSVGGVGGGGIFVPML+LIIGF
Sbjct: 3 VNFLWQPGESGYQHVWPDMEFGWQIILGTIVGFFGAAFGSVGGVGGGGIFVPMLSLIIGF 182
Query: 118 DPKSSTAISKCMIMGAALSTVYYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICN 177
D KSSTAISKCMIMGAALSTVYYN+ LR+PTLD+P+IDYDLALL QPMLMLGISIGV N
Sbjct: 183 DAKSSTAISKCMIMGAALSTVYYNLNLRHPTLDLPIIDYDLALLIQPMLMLGISIGVAFN 362
Query: 178 VMFADWMVTVLLIILFIG 195
V+ ADWMVT+LL++LF+G
Sbjct: 363 VVVADWMVTMLLLVLFLG 416
>BI321835
Length = 433
Score = 128 bits (322), Expect(2) = 1e-47
Identities = 58/90 (64%), Positives = 75/90 (82%)
Frame = +3
Query: 58 VDFLWESGKSSYEPVWPEMKFDWKIIVGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGF 117
++F+W+ Y+ VWPEM+F W+I+VG++IG LGAA GSVGGVGGGGIFVPML LIIGF
Sbjct: 24 LEFIWKH--LGYQHVWPEMEFSWRIVVGTLIGILGAAFGSVGGVGGGGIFVPMLILIIGF 197
Query: 118 DPKSSTAISKCMIMGAALSTVYYNMRLRNP 147
DPKS+ AISKCM+ GAA+S V++ M+ R+P
Sbjct: 198 DPKSAVAISKCMVTGAAISAVFFCMKQRHP 287
Score = 79.7 bits (195), Expect(2) = 1e-47
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = +1
Query: 147 PTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLLIILFIG 195
PTLD P+IDYDL LL QP LMLGISIGVI +V+FADWMVT+LLIIL IG
Sbjct: 286 PTLDEPVIDYDLMLLIQPTLMLGISIGVILSVIFADWMVTILLIILCIG 432
>TC211860 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (33%)
Length = 626
Score = 167 bits (423), Expect = 9e-42
Identities = 102/158 (64%), Positives = 105/158 (65%)
Frame = +2
Query: 308 E*LNQRERKLKI*RFIKYCYIVQLE**LVWLEGCLV*EVASFWGHSF*KWEFLRR*QVLH 367
E* +QRE K I RFI+ V LE* LVWL CL *EV SFWGH F* WEFL R*QV H
Sbjct: 11 E*XHQREXKXXIXRFIRXXXTVPLE*WLVWLVDCLX*EVVSFWGHCF*NWEFLLR*QVPH 190
Query: 368 QHFPCFFHPPCQ*CNITI*IASQCLTLHTLFWLQP*LHLLASMW*EG*LQSLVVHQLLSS 427
Q P FFHPPCQ CN T I S+ L L TL WLQP*L L SMW*E *L L H SS
Sbjct: 191 QLLPWFFHPPCQWCNTTCWIVSRYLMLPTLHWLQP*LPSLVSMW*EK*L*FLAEHPSSSS 370
Query: 428 Y*HPPFS*VQSV*VE*EFRT*L*SWKIMSIWGLKIFAL 465
Y*H PFS QSV*VE E R * KIMSIW LKIFAL
Sbjct: 371 Y*H*PFSSAQSV*VEWE*RI*SRR*KIMSIWALKIFAL 484
>AW099768
Length = 380
Score = 127 bits (318), Expect = 1e-29
Identities = 57/78 (73%), Positives = 70/78 (89%)
Frame = +3
Query: 139 YYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIGVICNVMFADWMVTVLLIILFIGTST 198
YYN+ LR+PTLD+P+IDYDLALL QPMLMLGISIGV NV+ ADWMVT+LL++LF+GTST
Sbjct: 3 YYNLNLRHPTLDLPIIDYDLALLIQPMLMLGISIGVAFNVVVADWMVTMLLLVLFLGTST 182
Query: 199 KALIKGINTWKKETMLKK 216
KA KG+ TWKKET++K+
Sbjct: 183 KAFFKGVETWKKETIMKE 236
>AI795109
Length = 139
Score = 63.2 bits (152), Expect = 2e-10
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = +2
Query: 133 AALSTVYYNMRLRNPTLDMPLIDYDLALLFQPMLMLGISIG 173
AA+STV YN+R +PTLD+P+IDYD+ALL+QPML LG +IG
Sbjct: 5 AAVSTVCYNLRFTHPTLDLPVIDYDMALLYQPMLTLGTNIG 127
>TC205484 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (37%)
Length = 821
Score = 45.1 bits (105), Expect = 7e-05
Identities = 63/159 (39%), Positives = 68/159 (42%), Gaps = 2/159 (1%)
Frame = +1
Query: 308 E*LNQRERKLKI*RFIKYCYIVQLE**LVWLEGCLV*EVASFWGHSF*KWEFLRR*QVLH 367
E*L RE K KI F IV L LV L C *E S W H F WE R Q
Sbjct: 61 E*LLPRENKGKISLFSS**SIVSLVFWLV*LVACWD*EEDSLWVHFFWSWESHLRCQA-- 234
Query: 368 QHFPCFFHPP--CQ*CNITI*IASQCLTLHTLFWLQP*LHLLASMW*EG*LQSLVVHQLL 425
Q P P C N T * Q L L T F L LL S *E *L H L
Sbjct: 235 QQPPLQ*PSPHLCLS*NTTC*NVFQFLMLFTSFLWLLLLPLLDSTL*EN*LSYSGEHLL* 414
Query: 426 SSY*HPPFS*VQSV*VE*EFRT*L*SWKIMSIWGLKIFA 464
SS+* + V S *VE +IM+ W L+IFA
Sbjct: 415 SSF*PLQYLSVPSR*VELALSIWYTRSRIMNTWDLRIFA 531
>TC205269 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (35%)
Length = 771
Score = 42.4 bits (98), Expect = 4e-04
Identities = 52/130 (40%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +1
Query: 335 LVWLEGCLV*EVASFWGHSF*KWEFLRR*QVLHQHFPCFFHPPCQ*CNITI*IASQCLTL 394
LV L CLV FW E L R QVL P F CQ NIT * L L
Sbjct: 151 LV*LVACLVLVEVLFWDPFSWS*ESLLRCQVLQPLLP*HFQHLCQWWNITF*NGFLFLIL 330
Query: 395 HTLFWLQP*LH-LLASMW*EG*LQSLVVHQLLSSY*HPPFS*VQSV*VE*EFRT*L*SWK 453
TL WL P L LL *E L H S PF VQ *V ++T* +
Sbjct: 331 FTL-WLYPLLRPLLDKF**ESWLPY*GEHL*SFSSSPAPFLLVQYH*VVWAYQT*SKKLQ 507
Query: 454 IMSIWGLKIF 463
I S WGLK F
Sbjct: 508 IKSTWGLKTF 537
>TC205485 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (40%)
Length = 802
Score = 38.5 bits (88), Expect = 0.006
Identities = 63/187 (33%), Positives = 74/187 (38%), Gaps = 7/187 (3%)
Frame = +2
Query: 281 IGFLISCRFLLLSLLRFLKLYAYTKEQE*LNQRERKLKI*RFIKYCYIVQLE**LVWLEG 340
IG+ CRF ++ K+ + Q E K K+ YIV L + WLE
Sbjct: 41 IGY*TCCRFQFQLGYLDMRQLPCIKDGDKFLQWEIKGKLLLLSS*LYIVSL---VYWLE* 211
Query: 341 CLV---*EVASFWGHSF*KWEFLRR*QVLHQHFPCFFHPPCQ*CNITI*IASQCLTLHTL 397
+ * S WGHSF WE R QV P F C N T Q L L TL
Sbjct: 212 LVAYWE*VEDS*WGHSFWSWESHLRFQVPQPPLP*PFPHLCLL*NTTCSNVFQFLMLCTL 391
Query: 398 FWLQP*LHLLASMW*EG*LQSLVVHQLLSSY*HPPFS*VQSV*VE*EFRT*L*SW----K 453
L L S+ *E * L H S +* + QS *VE L* W K
Sbjct: 392 LRLLLFQQL*GSIL*ES*SMCLGEHL*SSLF*PSQYLSAQSH*VE----LAL*QWSKRLK 559
Query: 454 IMSIWGL 460
I SIW L
Sbjct: 560 ITSIWDL 580
>TC205486 similar to GB|AAO63445.1|28951043|BT005381 At2g25737 {Arabidopsis
thaliana;} , partial (31%)
Length = 842
Score = 35.4 bits (80), Expect = 0.054
Identities = 59/156 (37%), Positives = 63/156 (39%), Gaps = 5/156 (3%)
Frame = +2
Query: 314 ERKLKI*RFIKYCYIVQLE**LVWLEGCLV*EVASFWGHSF*KWEFLRR*QVLHQHFPCF 373
E K KI F IV L LV L C *E S W H F WE R P
Sbjct: 26 ENKGKISLFSS*LSIVSLVYWLV*LVACWD*EEDSLWVHFFWNWESHLRFLAPQPPLP*P 205
Query: 374 FHPPCQ*CNITI*IASQCLTLHT-LFWLQP*LHLLASMW*EG*LQSLVVHQLLSSY*HPP 432
F C N T * Q L L T WL L L S *E * L H L S +*
Sbjct: 206 FPHLCLL*NTTC*NVFQFLMLFTSSLWLLL-LPSLDSTL*EN*SSYLGEHLLSSLF*PLQ 382
Query: 433 FS*VQSV*VE*EFRT*L*SWK----IMSIWGLKIFA 464
+ VQS *VE L* W IM+ W L+I A
Sbjct: 383 YLSVQSH*VE----LAL*IWYTRSIIMNTWDLRISA 478
>TC205270 similar to UP|Q6Z001 (Q6Z001) Membrane protein-like, partial (35%)
Length = 1224
Score = 33.1 bits (74), Expect = 0.27
Identities = 59/194 (30%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Frame = +2
Query: 201 LIKGI-NTWKKETMLKKETAKQLEEEPKTGAYQ---RVQVKYKMKWCLC*RTFIGKNYHS 256
+IK + N K++ L+ K LE +G+ R+Q MK + R N+H
Sbjct: 2 IIKSLKNPRKRDQFLRMFVGKHLEFFSLSGSLYLPPRLQKLVDMKSAIPIR-----NFHF 166
Query: 257 LYMFGWPF*LFRLL---RHTPRLAPLSIGFLISCRFLLLSLLRFLKLYAYTKEQE*LNQR 313
+++ W + L R T +L +IG+LI R L +KL T+ +E* + +
Sbjct: 167 VFLPTWSSDIIMPLFSNRVTQQLVQWNIGYLIYYRSLWH*ERLHIKLCFCTQGRE**HPK 346
Query: 314 E-RKLKI*RFIKYCYIVQLE**LVWLEGCLV*EVASFWGHSF*KWEFLRR*QVLHQHFPC 372
E +L R C IV + LV L CLV W E L R QVL P
Sbjct: 347 EINELNGERTS*LC-IVPVAYALV*LVACLVLVEVLLWDLFSSS*ESLLRCQVLQLLLP* 523
Query: 373 FFHPPCQ*CNITI* 386
F CQ NIT *
Sbjct: 524 HFQHLCQWWNITF* 565
>BQ253378
Length = 392
Score = 32.7 bits (73), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (47%)
Frame = +1
Query: 19 LIMCILVMICNVSLAERVLKEKEPAKFVEKETKGFLKAMVDFLWESGKSSYEPVWP 74
L +L++ +VS E V +K E FL +++FLW S S YE WP
Sbjct: 52 LTFSLLLISASVSALEHVNHKKIDPTTAETS---FLGKVMNFLWSSSGSGYEHTWP 210
>AI442429
Length = 415
Score = 32.3 bits (72), Expect = 0.46
Identities = 20/65 (30%), Positives = 28/65 (42%)
Frame = -2
Query: 40 KEPAKFVEKETKGFLKAMVDFLWESGKSSYEPVWPEMKFDWKIIVGSIIGFLGAALGSVG 99
+EP +GFL+A + W Y P W + W +++G IG G G
Sbjct: 213 REPPSAGN*AAEGFLRA---WAWAFFDDDYYPRW---NWWWNVLIGPGIGLGPGLRGEAG 52
Query: 100 GVGGG 104
GV GG
Sbjct: 51 GVRGG 37
>TC217984 similar to UP|Q8S9J0 (Q8S9J0) At2g36630/F1O11.26, partial (43%)
Length = 998
Score = 31.6 bits (70), Expect = 0.79
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +3
Query: 75 EMKFDWKII---VGSIIGFLGAALGSVGGVGGGGIFVPMLALIIGFDPKSSTAISK-CMI 130
E +W I ++ G +G +G + G GGG + P+L L IG P+ ++A + M+
Sbjct: 162 EASIEWTAINLAFCALCGIVGGIVGGLLGSGGGFVLRPLL-LEIGVIPQVASATATFVMM 338
Query: 131 MGAALSTVYYNMRLRNP 147
++LS V + + R P
Sbjct: 339 FSSSLSVVEFYLLKRFP 389
>CO981269
Length = 791
Score = 31.6 bits (70), Expect = 0.79
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 285 ISCRFLLLSLLRFLKLYAYTKEQE*LNQRERKL 317
I CR LLL LL + L T+ QE*+N+ +RKL
Sbjct: 334 IICRTLLLVLLLLMLLLLLTRCQE*MNRHDRKL 432
>BI424298
Length = 422
Score = 30.4 bits (67), Expect = 1.8
Identities = 30/77 (38%), Positives = 33/77 (41%), Gaps = 3/77 (3%)
Frame = +1
Query: 327 YIVQLE**LVWLEGCLV---*EVASFWGHSF*KWEFLRR*QVLHQHFPCFFHPPCQ*CNI 383
YIV LE W++ +V * S WGHSF WE R QV F C N
Sbjct: 94 YIVSLE---YWMQ*LVVYWQ*VEDS*WGHSFCNWESHLRFQVPQTTLL*PFPHLCVW*NT 264
Query: 384 TI*IASQCLTLHTLFWL 400
T Q L L TL WL
Sbjct: 265 TCSNVFQFLMLCTLLWL 315
>TC225207 homologue to UP|Q9FNV7 (Q9FNV7) Auxin-repressed protein, partial
(89%)
Length = 1190
Score = 29.3 bits (64), Expect = 3.9
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
Frame = +3
Query: 267 FRLLRHTPRLAPLSIGFLISCRFLLLS-LLR--------FLKLY 301
FR+L HTP L L G++I+C F+ L+ +LR FL+LY
Sbjct: 528 FRILSHTPSLGYL--GYIITC*FIFLTRILRI*V*VYEFFLRLY 653
>TC213268
Length = 420
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 105 GIFVPMLALIIGFDPKSSTAISKCMI-MGAALSTVYYN 141
G F P+L+L I P SS++ S C+ M AA+S ++++
Sbjct: 28 GRFFPLLSLAISRIPSSSSSSSSCIASMYAAVSAIFFS 141
>BI968560 similar to GP|17064988|gb| g5bf protein {Arabidopsis thaliana},
partial (23%)
Length = 552
Score = 28.5 bits (62), Expect = 6.7
Identities = 16/60 (26%), Positives = 32/60 (52%), Gaps = 1/60 (1%)
Frame = -1
Query: 201 LIKGI-NTWKKETMLKKETAKQLEEEPKTGAYQRVQVKYKMKWCLC*RTFIGKNYHSLYM 259
L++G+ +++ E M++++ K+L + T RV + YK+ +C C Y LY+
Sbjct: 228 LVEGLADSYNLEAMVEEQIGKRLLSQQMT*FAARVLLAYKLLYCTC-------KYFXLYL 70
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.351 0.156 0.553
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,827,542
Number of Sequences: 63676
Number of extensions: 408517
Number of successful extensions: 4042
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 3954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4027
length of query: 465
length of database: 12,639,632
effective HSP length: 101
effective length of query: 364
effective length of database: 6,208,356
effective search space: 2259841584
effective search space used: 2259841584
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC147178.14