BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147178.1 - phase: 0
(79 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227215 similar to UP|Q6NLY8 (Q6NLY8) At4g36720, partial (62%) 110 2e-25
BI472093 80 2e-16
TC232314 weakly similar to UP|Q6NLY8 (Q6NLY8) At4g36720, partial... 47 2e-06
BM523358 32 0.076
TC219690 similar to UP|Q9S784 (Q9S784) AtHVA22c; 50565-49239 (At... 29 0.38
CA801733 29 0.49
TC219259 similar to UP|Q9S7V4 (Q9S7V4) AtHVA22a; 65476-64429 (At... 29 0.49
TC207189 similar to UP|Q9S7V4 (Q9S7V4) AtHVA22a; 65476-64429 (At... 29 0.49
TC223761 weakly similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic... 27 1.9
TC230613 homologue to UP|Q8L7N0 (Q8L7N0) TCP-1 chaperonin-like p... 26 3.2
BQ629929 26 4.2
TC220448 similar to GB|AAL06809.1|15809762|AY054148 At1g79970/F1... 25 5.5
TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-i... 25 5.5
TC219134 similar to UP|Q946Y1 (Q946Y1) Ceramide glucosyltransfer... 25 5.5
CA800981 25 7.1
AW755634 25 9.3
BE211313 similar to PIR|C96774|C967 AtHVA22a 65476-64429 [impor... 25 9.3
TC217311 similar to GB|AAO63352.1|28950857|BT005288 At2g26600 {A... 25 9.3
>TC227215 similar to UP|Q6NLY8 (Q6NLY8) At4g36720, partial (62%)
Length = 781
Score = 110 bits (274), Expect = 2e-25
Identities = 49/63 (77%), Positives = 59/63 (92%)
Frame = +3
Query: 3 LPLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLV 62
+ L+GSNI SEVGLRLLLCPLGS+VVIRTACC+VG+ +PVY+TFKAIESK+QDAQ +CL+
Sbjct: 57 MALLGSNITSEVGLRLLLCPLGSNVVIRTACCTVGVAMPVYTTFKAIESKDQDAQHKCLL 236
Query: 63 YWA 65
YWA
Sbjct: 237 YWA 245
>BI472093
Length = 421
Score = 79.7 bits (195), Expect = 2e-16
Identities = 35/53 (66%), Positives = 45/53 (84%)
Frame = +2
Query: 13 EVGLRLLLCPLGSHVVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYWA 65
E+GLRLLL P+ S +++RTACCS+G+ LPVYSTFKAIE+ + QQRCL+YWA
Sbjct: 44 ELGLRLLLSPVTSDLLLRTACCSIGLALPVYSTFKAIENNDPYEQQRCLLYWA 202
>TC232314 weakly similar to UP|Q6NLY8 (Q6NLY8) At4g36720, partial (50%)
Length = 780
Score = 46.6 bits (109), Expect = 2e-06
Identities = 20/29 (68%), Positives = 24/29 (81%)
Frame = +1
Query: 37 GIGLPVYSTFKAIESKNQDAQQRCLVYWA 65
G+ LPVYSTFKAIE+ + QQRCL+YWA
Sbjct: 115 GLRLPVYSTFKAIENNDPYEQQRCLLYWA 201
>BM523358
Length = 430
Score = 31.6 bits (70), Expect = 0.076
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +1
Query: 33 CCSVGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
C G P Y+T KAIE + + + L+YW
Sbjct: 184 CNIAGFAYPAYATLKAIEHDHDQIKSQWLIYW 279
>TC219690 similar to UP|Q9S784 (Q9S784) AtHVA22c; 50565-49239 (AtHVA22c),
partial (77%)
Length = 851
Score = 29.3 bits (64), Expect = 0.38
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 41 PVYSTFKAIESKNQDAQQRCLVYW 64
P+Y++ KAIE+K+ Q+ L YW
Sbjct: 217 PLYASIKAIETKSTTDDQQWLTYW 288
>CA801733
Length = 449
Score = 28.9 bits (63), Expect = 0.49
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = +2
Query: 41 PVYSTFKAIESKNQDAQQRCLVYW 64
P+Y++ KAIE++++ Q+ L YW
Sbjct: 161 PLYASIKAIETRSRTDDQQWLTYW 232
>TC219259 similar to UP|Q9S7V4 (Q9S7V4) AtHVA22a; 65476-64429 (AtHVA22a),
partial (86%)
Length = 787
Score = 28.9 bits (63), Expect = 0.49
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = +3
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
+ + P+Y++ +AIESK+ Q+ L YW
Sbjct: 144 LSLAYPLYASVRAIESKSPVDDQQWLTYW 230
>TC207189 similar to UP|Q9S7V4 (Q9S7V4) AtHVA22a; 65476-64429 (AtHVA22a),
partial (89%)
Length = 917
Score = 28.9 bits (63), Expect = 0.49
Identities = 11/29 (37%), Positives = 19/29 (64%)
Frame = +1
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVYW 64
+ + P+Y++ +AIESK+ Q+ L YW
Sbjct: 163 ISLVYPLYASIRAIESKSPIDDQQWLTYW 249
>TC223761 weakly similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic
acid-induced-like protein), partial (72%)
Length = 650
Score = 26.9 bits (58), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (62%)
Frame = +1
Query: 41 PVYSTFKAIESKNQDAQQRCLVYWAGLNFI 70
P+Y++ +AIES + Q+ L YW +F+
Sbjct: 82 PLYASMRAIESPSTLDDQQWLTYWVLYSFM 171
>TC230613 homologue to UP|Q8L7N0 (Q8L7N0) TCP-1 chaperonin-like protein
(At5g16070), partial (22%)
Length = 446
Score = 26.2 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = -2
Query: 3 LPLIGSNIASEVGLRLLLCPLGSHVVIRTAC 33
LP + S I+ +L+ PLG +V+RT+C
Sbjct: 277 LPSLVSLISPAPPTSILMVPLGPRLVLRTSC 185
>BQ629929
Length = 437
Score = 25.8 bits (55), Expect = 4.2
Identities = 15/47 (31%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +1
Query: 3 LPLIGSNIASEVGLRLLLCPLGSHVVI---RTACCSVGIGLPVYSTF 46
LPLI ++ + LC G + + +T C VG+G+ +STF
Sbjct: 163 LPLISFSLTKK------LCQCGRSLTLGSRKTQLCIVGLGITSFSTF 285
>TC220448 similar to GB|AAL06809.1|15809762|AY054148 At1g79970/F19K16.7
{Arabidopsis thaliana;} , partial (5%)
Length = 454
Score = 25.4 bits (54), Expect = 5.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 4 PLIGSNIASEVGLRLLLCPLGSHVVIRTACCSVGIGL 40
PL + + S +G + P SH CC VG+G+
Sbjct: 234 PLDDARVLSNLGKNPVRKPRSSHHERSWDCCKVGLGI 344
>TC219794 similar to UP|Q9FED2 (Q9FED2) AtHVA22e (Abscisic acid-induced-like
protein), partial (90%)
Length = 709
Score = 25.4 bits (54), Expect = 5.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 41 PVYSTFKAIESKNQDAQQRCLVYWAGLNFI 70
P+Y++ AIES+++ ++ L YW +F+
Sbjct: 250 PLYASVVAIESQSKLDDEQWLAYWIIYSFL 339
>TC219134 similar to UP|Q946Y1 (Q946Y1) Ceramide glucosyltransferase, partial
(43%)
Length = 1075
Score = 25.4 bits (54), Expect = 5.5
Identities = 15/40 (37%), Positives = 20/40 (49%)
Frame = -3
Query: 27 VVIRTACCSVGIGLPVYSTFKAIESKNQDAQQRCLVYWAG 66
V + T CC+VG+ ST K +AQQ C+ W G
Sbjct: 368 VPLETTCCTVGLLSVSSSTLK-------EAQQECI--WLG 276
>CA800981
Length = 435
Score = 25.0 bits (53), Expect = 7.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 46 FKAIESKNQDAQQRCLVYWAGLNFINPYR 74
F + + Q ++RC+ +GL+F+N +R
Sbjct: 327 FSDVNKRLQSEKKRCMAC*SGLHFLNNWR 241
>AW755634
Length = 443
Score = 24.6 bits (52), Expect = 9.3
Identities = 10/15 (66%), Positives = 12/15 (79%)
Frame = -1
Query: 58 QRCLVYWAGLNFINP 72
+ CLV +GLNFINP
Sbjct: 95 EHCLV*VSGLNFINP 51
>BE211313 similar to PIR|C96774|C967 AtHVA22a 65476-64429 [imported] -
Arabidopsis thaliana, partial (35%)
Length = 460
Score = 24.6 bits (52), Expect = 9.3
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = +3
Query: 36 VGIGLPVYSTFKAIESKNQDAQQRCLVY 63
+ + P+Y++ +AIESK+ Q+ L Y
Sbjct: 342 ISLVYPLYASIRAIESKSPIDDQQWLTY 425
>TC217311 similar to GB|AAO63352.1|28950857|BT005288 At2g26600 {Arabidopsis
thaliana;} , partial (52%)
Length = 763
Score = 24.6 bits (52), Expect = 9.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 31 TACCSVGIGLPVYSTFKAIESKNQDAQQRCL 61
T+C ++ +P+ F S+N D QQ C+
Sbjct: 658 TSCLTIDQIIPLIVIFHKAISRNVDVQQMCI 750
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.325 0.141 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,936,265
Number of Sequences: 63676
Number of extensions: 46046
Number of successful extensions: 307
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of query: 79
length of database: 12,639,632
effective HSP length: 55
effective length of query: 24
effective length of database: 9,137,452
effective search space: 219298848
effective search space used: 219298848
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC147178.1