BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147014.6 + phase: 0
(211 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228665 similar to UP|HL3A_ARATH (Q9SWE5) Phosphopantothenoylcy... 229 5e-61
AI437555 32 0.28
TC220961 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protei... 28 2.3
BM178673 similar to GP|6690399|gb| soluble starch synthase {Arab... 28 3.0
BE023320 similar to GP|18565112|dbj transcription factor LIM {Po... 27 5.2
TC209149 similar to GB|AAP37773.1|30725502|BT008414 At2g41960 {A... 27 5.2
TC218220 similar to UP|Q9LRN1 (Q9LRN1) Emb|CAB39630.1, partial (... 27 6.8
TC226331 UP|Q6R269 (Q6R269) Disease resistance protein, complete 27 8.9
TC226326 UP|Q6R270 (Q6R270) Disease resistance protein, complete 27 8.9
TC226327 UP|Q6R271 (Q6R271) Disease resistance protein, complete 27 8.9
CA853840 similar to GP|6708183|gb| papain-type cysteine endopept... 27 8.9
TC216174 27 8.9
TC208803 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, parti... 27 8.9
>TC228665 similar to UP|HL3A_ARATH (Q9SWE5) Phosphopantothenoylcysteine
decarboxylase (Halotolerance protein Hal3a) (AtHal3a)
(PPCDC) (AtCoaC) , partial (89%)
Length = 967
Score = 229 bits (585), Expect = 5e-61
Identities = 109/184 (59%), Positives = 141/184 (76%), Gaps = 2/184 (1%)
Frame = +3
Query: 17 AKRKPRIVIGACGSVAAMKFGLVLRAFMEWAEVHAIVTKPSCHFISEASIPKGVIVFSDE 76
A RKPRI++ A GSVAA+KF + F EWA+V A+ T S HFI A++PK VI+++D+
Sbjct: 201 APRKPRILLAASGSVAAVKFANLCHCFSEWADVRAVSTSASLHFIDRAAMPKDVILYTDD 380
Query: 77 HEWQAWKQLGDTAAHIKLANWADILLIAPLSAHTLAKIGGGLCDNLLTSIVRSWNYKKPM 136
+EW +WK+LGD+ HI+L WADI++IAPLSA+TL KI GGLCDNLLT IVR+W+Y KP
Sbjct: 381 NEWSSWKKLGDSVLHIELRKWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPF 560
Query: 137 FVAPSMNDAMWRNPLTEKHLKRINELGITLIPP--HESSDGEYTNTGSMADPSKIYSTVR 194
FVAP+MN MW NP TE+H I+ELGI+LIPP + G+Y N G+MA+PS IYSTVR
Sbjct: 561 FVAPAMNTLMWNNPFTERHFISIDELGISLIPPVTKRLACGDYGN-GAMAEPSTIYSTVR 737
Query: 195 VFYD 198
+FY+
Sbjct: 738 LFYE 749
>AI437555
Length = 422
Score = 31.6 bits (70), Expect = 0.28
Identities = 15/27 (55%), Positives = 19/27 (69%)
Frame = +3
Query: 17 AKRKPRIVIGACGSVAAMKFGLVLRAF 43
A RKPRI++ A GSVAA+KF + F
Sbjct: 75 APRKPRILLAASGSVAAVKFANLCHYF 155
>TC220961 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(66%)
Length = 826
Score = 28.5 bits (62), Expect = 2.3
Identities = 20/81 (24%), Positives = 40/81 (48%)
Frame = -1
Query: 118 LCDNLLTSIVRSWNYKKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPPHESSDGEY 177
+CD +S ++ + P F+ P ++W++ L+E HLK + E L + + G++
Sbjct: 331 MCDTHRSSNIQKVSQIIP-FLFPEAESSVWKHQLSEVHLK-LFERSRQLAS*KDETFGDF 158
Query: 178 TNTGSMADPSKIYSTVRVFYD 198
+ + D + +R FYD
Sbjct: 157 LSRNRI-DAGLLLRLLRFFYD 98
>BM178673 similar to GP|6690399|gb| soluble starch synthase {Arabidopsis
thaliana}, partial (23%)
Length = 418
Score = 28.1 bits (61), Expect = 3.0
Identities = 16/67 (23%), Positives = 29/67 (42%), Gaps = 1/67 (1%)
Frame = +2
Query: 36 FGLVLRAFMEWAEVHAIVTKPSCHFISEASIPKG-VIVFSDEHEWQAWKQLGDTAAHIKL 94
+G + F WA HA+ T + +F+ A + ++ S + W+ G H L
Sbjct: 152 YGALGWVFPTWARTHALDTGEAVNFLKGAVVTSDRIVTVSKGYSWEITTSEGGCGLHDLL 331
Query: 95 ANWADIL 101
++ IL
Sbjct: 332 SSRKSIL 352
>BE023320 similar to GP|18565112|dbj transcription factor LIM {Populus
kitakamiensis}, partial (45%)
Length = 411
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 121 NLLTSIVRSWNYKKPMFVAPSMNDAMWRNP 150
+LL +VR W+YKKP V + + W P
Sbjct: 75 SLLLFLVRVWSYKKPWPVLEEPHKSAWLVP 164
>TC209149 similar to GB|AAP37773.1|30725502|BT008414 At2g41960 {Arabidopsis
thaliana;} , partial (14%)
Length = 839
Score = 27.3 bits (59), Expect = 5.2
Identities = 12/53 (22%), Positives = 28/53 (52%)
Frame = +2
Query: 118 LCDNLLTSIVRSWNYKKPMFVAPSMNDAMWRNPLTEKHLKRINELGITLIPPH 170
LC ++LT +++ W+++ +F P + H+++ LG+ ++P H
Sbjct: 383 LCQSILTDLLQKWSFQLDLF------------PRDQHHMEK---LGMIILPSH 496
>TC218220 similar to UP|Q9LRN1 (Q9LRN1) Emb|CAB39630.1, partial (23%)
Length = 634
Score = 26.9 bits (58), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +2
Query: 185 DPSKIYSTVRVFYDYNILKKKPG 207
+ SKI S +R YD+N++K K G
Sbjct: 281 EDSKIKSALRKVYDFNVMKVKGG 349
>TC226331 UP|Q6R269 (Q6R269) Disease resistance protein, complete
Length = 4194
Score = 26.6 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +3
Query: 57 SCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKL 94
SC F S S+ FSD EW+ W+ G T A +L
Sbjct: 2541 SCSFTSLESLK-----FSDMKEWEEWECKGVTGAFPRL 2639
>TC226326 UP|Q6R270 (Q6R270) Disease resistance protein, complete
Length = 3786
Score = 26.6 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +1
Query: 57 SCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKL 94
SC F S S+ FSD EW+ W+ G T A +L
Sbjct: 3220 SCSFTSLESLK-----FSDMKEWEEWECKGVTGAFPRL 3318
Score = 26.6 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +1
Query: 57 SCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKL 94
SC F S S+ FSD EW+ W+ G T A +L
Sbjct: 2518 SCSFTSLESLE-----FSDMKEWEEWECKGVTGAFPRL 2616
>TC226327 UP|Q6R271 (Q6R271) Disease resistance protein, complete
Length = 3390
Score = 26.6 bits (57), Expect = 8.9
Identities = 15/38 (39%), Positives = 19/38 (49%)
Frame = +1
Query: 57 SCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKL 94
SC F S S+ FSD EW+ W+ G T A +L
Sbjct: 2530 SCSFTSLESLE-----FSDMKEWEEWECKGVTGAFPRL 2628
>CA853840 similar to GP|6708183|gb| papain-type cysteine endopeptidase XCP2
{Arabidopsis thaliana}, partial (29%)
Length = 459
Score = 26.6 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = -2
Query: 123 LTSIVRSWNYKKPMFVAPSMNDAMWRN 149
LTS++R P ++P MN WRN
Sbjct: 164 LTSMIRRVR*AYPWILSPPMNSPQWRN 84
>TC216174
Length = 1254
Score = 26.6 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = -3
Query: 39 VLRAFMEWAEVHAIVTKPSCHFISEASIP 67
V + +++WA V V K +C S+ SIP
Sbjct: 1021 VHQRWLQWASVRVFVYKITCSCFSQGSIP 935
>TC208803 similar to UP|Q8H0Z6 (Q8H0Z6) At1g71710/F14O23_9, partial (29%)
Length = 923
Score = 26.6 bits (57), Expect = 8.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 47 AEVHAIVTKPSCHFISEASIPKGVIVFSDEHEWQAWKQLGDTAAHIKLAN 96
A+VH I+ + H +S +PK ++ +HE W GD I L+N
Sbjct: 97 ADVHDILRRTHFHSLSYIGLPKKIL----DHERIIW--FGDLNYRINLSN 228
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,030,653
Number of Sequences: 63676
Number of extensions: 140262
Number of successful extensions: 589
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of query: 211
length of database: 12,639,632
effective HSP length: 93
effective length of query: 118
effective length of database: 6,717,764
effective search space: 792696152
effective search space used: 792696152
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC147014.6