BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC147013.3 + phase: 0
(380 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, par... 113 1e-25
TC232958 90 2e-18
BM121480 82 5e-16
TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%) 78 8e-15
TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like pro... 77 2e-14
TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (... 74 1e-13
TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 72 3e-13
TC234332 70 2e-12
TC223618 69 5e-12
AW395660 68 8e-12
BM143422 60 1e-09
TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragm... 59 5e-09
TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {A... 55 4e-08
BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa ... 55 4e-08
TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g2... 55 5e-08
AI443156 54 1e-07
BI787361 47 2e-05
TC235149 44 1e-04
TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere au... 42 6e-04
TC208536 similar to GB|AAR24712.1|38603934|BT010934 At5g56260 {A... 40 0.002
>TC231109 weakly similar to UP|Q9LUP7 (Q9LUP7) Gb|AAD25583.1, partial (8%)
Length = 1061
Score = 113 bits (283), Expect = 1e-25
Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 19/297 (6%)
Frame = +3
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVACESVSAY 86
LP E++ IL RLPV+S++R + CK W+++ HF H ++ + L+ Y
Sbjct: 93 LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFH--LNKSHSSLILRHRSHLY 266
Query: 87 RTWEIKTYPIESLLENSSTTVIPVSNTGHQRYTILGSCNGFLCLYDNYQRCVRLWNPSIN 146
+ ++K+ P ++ +E S ++ SN+ +LGS NG LC+ N + LWNP +
Sbjct: 267 -SLDLKS-PEQNPVE-LSHPLMCYSNS----IKVLGSSNGLLCI-SNVADDIALWNPFLR 422
Query: 147 LKSKSSPTIDRF----------IYYGFGYDQVNHKYKLLAVKAFSRI------TETMIYT 190
K + P DRF YGFG+ ++ YKLL++ F + ++ +YT
Sbjct: 423 -KHRILPA-DRFHRPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQKRTFDSQVQLYT 596
Query: 191 FGENSCKNVEVKDFPRYPPNRKHLGKFVSGTLNWIVDER---DGRATILSFDIEKETYRQ 247
+S KN + P + +G FVSG+L+W+V + I+SFD+ +ET+ +
Sbjct: 597 LKSDSWKN--LPSMPYALCCARTMGVFVSGSLHWLVTRKLQPHEPDLIVSFDLTRETFHE 770
Query: 248 VLLPQHGYAVYSPGLYVLSNCICVCTSFLDTRWQLWMMKKYGVAESWTKLMSIPHEN 304
V LP + + +L C+CV T + +W+M+ YG SW KL ++ N
Sbjct: 771 VPLPVTVNGDFDMQVALLGGCLCV-VEHRGTGFDVWVMRVYGSRNSWEKLFTLLENN 938
>TC232958
Length = 758
Score = 89.7 bits (221), Expect = 2e-18
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 21/235 (8%)
Frame = +1
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVACESVSAY 86
LP++LI ILLRLPV+SL+RFK VCKSW L SD FA +HF + + + SA
Sbjct: 61 LPQDLITEILLRLPVKSLVRFKSVCKSWLFLISDPRFAKSHFDLFAALADRILFIASSAP 240
Query: 87 RTWEIKTYPIESLLENSSTTV-----IPVSNTGHQRYTILGSCNGFLCLYDNYQRCVRLW 141
E+++ + L + S +V +P I+GSC GF+ L+ CV W
Sbjct: 241 ---ELRSIDFNASLHDDSASVAVTVDLPAPKPYFHFVEIIGSCRGFILLHCLSHLCV--W 405
Query: 142 NPSINLKSKSSPTIDRF---------IYYGFGYDQVNHKYKLL--AVKAFSRITETMIYT 190
NP+ + K P F + GFGYD + ++ + I++
Sbjct: 406 NPTTGV-HKVVPLSPIFFNKDAVFFTLLCGFGYDPSTDDFLVVHACYNPKHQANCAEIFS 582
Query: 191 FGENSCKNVEVKDFP----RYPPNRKHLGKFVSGTLNWIVDERDGRA-TILSFDI 240
N+ K +E FP RY G F++G ++W+ + I++FD+
Sbjct: 583 LRANAWKGIEGIHFPYTHFRYTNRYNQFGSFLNGAIHWLAFRINASINVIVAFDL 747
>BM121480
Length = 917
Score = 81.6 bits (200), Expect = 5e-16
Identities = 84/273 (30%), Positives = 117/273 (42%), Gaps = 16/273 (5%)
Frame = +3
Query: 21 NKPLPFLPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVAC 80
N+ L LP+ELI ILLRLPV+SLLRFKCV +KT D + +P +
Sbjct: 48 NQSLTTLPQELIREILLRLPVKSLLRFKCVL--FKTCSRDVVY----------FP--LPL 185
Query: 81 ESVSAYRTWEIKTYPIESLLENSSTTVIPVSNTGHQRYTILGSCNGFLCLYDNYQRCVRL 140
S+ R + P ILGSC G + LY + + L
Sbjct: 186 PSIPCLRLDDFGIRP-----------------------KILGSCRGLVLLYYDDSANLIL 296
Query: 141 WNPSINLKSKSSPTIDRFIY---YGFGYDQVNHKYKLLAV--KAFSRITETMIYTFGENS 195
WNPS+ + K P I YGFGYD+ +Y L+ + F T IY+F S
Sbjct: 297 WNPSLG-RHKXLPNYRDDITSFPYGFGYDESKDEYLLILIGLPKFGPETGADIYSFKTES 473
Query: 196 CKNVEVKDFP--RYPPNR--KHLGKFVSGTLNWIV-DERDGRATILSFDIEKETYRQVLL 250
K + P RY G ++G L+W V E I++FD+ + T + L
Sbjct: 474 WKTDTIVYDPLXRYXAEDXIARAGSLLNGALHWFVFSESKXDHVIIAFDLVERTLSXIPL 653
Query: 251 P------QHGYAVYSPGLYVLSNCICVCTSFLD 277
P AVY GL ++ C+ VC S ++
Sbjct: 654 PLADRSTVQKDAVY--GLKIMGXCLXVCCSTVE 746
>TC218059 weakly similar to UP|Q84KQ9 (Q84KQ9) F-box, partial (7%)
Length = 1185
Score = 77.8 bits (190), Expect = 8e-15
Identities = 87/319 (27%), Positives = 142/319 (44%), Gaps = 45/319 (14%)
Frame = +3
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVACES---- 82
LP EL+ +L RLP + LL KCVCKSW L +D HF +N+++ VY L + E
Sbjct: 66 LPGELVSNVLSRLPSKVLLLCKCVCKSWFDLITDPHFVSNYYV---VYNSLQSQEEHLLV 236
Query: 83 VSAYRTWEIKTYPIESLLENSSTTVIPVS----------NTGHQRYT-ILGSCNGFLCLY 131
+ +KTY I L N++ VS N+ H+ +T ILG CNG L
Sbjct: 237 IRRPFFSGLKTY-ISVLSWNTNDPKKHVSSDVLNPPYEYNSDHKYWTEILGPCNGIYFLE 413
Query: 132 DNYQRCVRLWNPSINLKSKSSP---------TIDRFIYYGFGYDQVNHKYKLLAVK-AFS 181
N L NPS+ + K+ P T Y GFG+D + YK++ +K +
Sbjct: 414 GNPN---VLMNPSLG-EFKALPKSHFTSPHGTYTFTDYAGFGFDPKTNDYKVVVLKDLWL 581
Query: 182 RITE--------TMIYTFGENSCKNVE--VKDFPRYPPNRKHLGKFVSGTLNW--IVDER 229
+ T+ +Y+ NS + ++ + P + + + +W V+E
Sbjct: 582 KETDEREIGYWSAELYSLNSNSWRKLDPSLLPLPIEIWGSSRVFTYANNCCHWWGFVEES 761
Query: 230 DG-RATILSFDIEKETYRQVLLPQ------HGYAVYSPGLYVLS-NCICVCTSFLDTRWQ 281
D + +L+FD+ KE++R++ +P+ + P S + + R+
Sbjct: 762 DATQDVVLAFDMVKESFRKIRVPKIRDSSDEKFGTLVPFEESASIGFLVYPVRGTEKRFD 941
Query: 282 LWMMKKYGVAESWTKLMSI 300
+W+MK Y SW K S+
Sbjct: 942 VWVMKDYWDEGSWVKQYSV 998
>TC216702 similar to UP|Q9LDP5 (Q9LDP5) FLORICAULA/LEAFY-like protein,
partial (5%)
Length = 1631
Score = 76.6 bits (187), Expect = 2e-14
Identities = 58/237 (24%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Frame = +3
Query: 138 VRLWNPSIN---------LKSKSSPTIDRFI--YYGFGYDQVNHKYKLLAVKAFSRI--- 183
+ WNPS+ + + P F GFG+D YKL+ + F +
Sbjct: 30 IAFWNPSLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDR 209
Query: 184 ---TETMIYTFGENSCKNVEVKDFPRYPPNRKHLGKFVSGTLNWIVD---ERDGRATILS 237
+ +YT N+ K + P + +G FV +L+W+V E D I++
Sbjct: 210 SFDAQVKLYTLRANAWKTLP--SLPYALCCARTMGVFVGNSLHWVVTRKLEPDQPDLIIA 383
Query: 238 FDIEKETYRQVLLPQHGYAV--YSPGLYVLSNCICVCTSFLDTRWQLWMMKKYGVAESWT 295
FD+ + +R++ LP G + L +L +C+ +F TR +W+M++Y +SW
Sbjct: 384 FDLTHDIFRELPLPDTGGVDGGFEIDLALLGGSLCMTVNFHKTRIDVWVMREYNRRDSWC 563
Query: 296 KLMSIPHENLLISNISLWPCVEPLFISENGVVLLMNTSSSQLILYNLNSRGLYFPRI 352
K+ ++ + S CV PL S +G +L+ +L Y+L + + +I
Sbjct: 564 KVFTLEESREMRS----LKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEVALVKI 722
>TC211805 similar to UP|Q9K6E7 (Q9K6E7) BH3782 protein, partial (13%)
Length = 693
Score = 73.6 bits (179), Expect = 1e-13
Identities = 45/118 (38%), Positives = 61/118 (51%)
Frame = +1
Query: 261 GLYVLSNCICVCTSFLDTRWQLWMMKKYGVAESWTKLMSIPHENLLISNISLWPCVEPLF 320
GL VL C+C+ + T + +WMMK YG ESW KL+SIP+ + N + P +
Sbjct: 1 GLGVLQGCLCMNYDYKKTHFVVWMMKDYGARESWVKLVSIPY----VPNPENFSYSGPYY 168
Query: 321 ISENGVVLLMNTSSSQLILYNLNSRGLYFPRIPPSYLNIYYIEPKLDLHIYHESLLSP 378
ISENG VLLM LILYN +P+I + D +Y E+L+SP
Sbjct: 169 ISENGEVLLM--FEFDLILYNPRDNSFKYPKIESG-------KGWFDAEVYVETLVSP 315
>TC233794 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 449
Score = 72.4 bits (176), Expect = 3e-13
Identities = 49/123 (39%), Positives = 67/123 (53%), Gaps = 12/123 (9%)
Frame = +1
Query: 21 NKPLPFLPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLIST-------- 72
N+ L LP+ELI ILLRLPV+SLLRFKCVCKS+ +L SD F +H+ ++
Sbjct: 91 NQSLTTLPQELIREILLRLPVKSLLRFKCVCKSFLSLISDPQFVISHYALAASPTHRLIL 270
Query: 73 ----VYPQLVACESVSAYRTWEIKTYPIESLLENSSTTVIPVSNTGHQRYTILGSCNGFL 128
Y Q +A ESV + ++ +P L S + + + G R ILGSC G +
Sbjct: 271 RSHDFYAQSIATESVFKTCSRDVVYFP----LPLPSIPCLRLDDFG-IRPKILGSCRGLV 435
Query: 129 CLY 131
LY
Sbjct: 436 LLY 444
>TC234332
Length = 644
Score = 70.1 bits (170), Expect = 2e-12
Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 13/140 (9%)
Frame = +2
Query: 215 GKFVSGTLNWIVDERDGR-----------ATILSFDIEKETYRQVLLPQHGYAV--YSPG 261
G V GT+NW+ I S+D++ E+YR +L+P V P
Sbjct: 20 GASVRGTVNWLALPNSSSDYQWETVTIDDLVIFSYDLKNESYRYLLMPDGLLEVPHSPPE 199
Query: 262 LYVLSNCICVCTSFLDTRWQLWMMKKYGVAESWTKLMSIPHENLLISNISLWPCVEPLFI 321
L VL C+C+ + W+MK++GV +SWT+ ++I ++ L I L V
Sbjct: 200 LVVLKGCLCLSHRHGGNHFGFWLMKEFGVEKSWTRFLNISYDQLHIHGGFLDHPVILCMS 379
Query: 322 SENGVVLLMNTSSSQLILYN 341
++GVVLL N + ILYN
Sbjct: 380 EDDGVVLLENGGHGKFILYN 439
>TC223618
Length = 444
Score = 68.6 bits (166), Expect = 5e-12
Identities = 50/144 (34%), Positives = 71/144 (48%), Gaps = 13/144 (9%)
Frame = +1
Query: 89 WEIKTYPIESLLENSSTTV----IPVSNTGHQRYTILGSCNGFLCLYDNYQRCVRLWNPS 144
+ +K+ + SL N ST PV N + I+GSCNG LC CV LWNPS
Sbjct: 25 FHLKSCSLSSLFNNLSTVCDELNYPVKNK-FRHDGIVGSCNGLLCFAIKGD-CVLLWNPS 198
Query: 145 INLKSKSSPTIDR-----FIYYGFGYDQVNHKYKLLAV----KAFSRITETMIYTFGENS 195
I + KS P + F +G GYD VN YK++AV + + +Y+ NS
Sbjct: 199 IRVSKKSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFCDPSEYFIECKVKVYSMATNS 378
Query: 196 CKNVEVKDFPRYPPNRKHLGKFVS 219
+ +++DFP ++ GKFVS
Sbjct: 379 WR--KIQDFPHGFSPFQNSGKFVS 444
>AW395660
Length = 381
Score = 67.8 bits (164), Expect = 8e-12
Identities = 33/66 (50%), Positives = 44/66 (66%), Gaps = 8/66 (12%)
Frame = +3
Query: 6 VNNTDSTLPVAETTANK--------PLPFLPEELIVIILLRLPVRSLLRFKCVCKSWKTL 57
+N D T P+ ++ K PLPFLP+EL+V IL RLPV+SLL+F+CVCKSW +L
Sbjct: 177 INPMDRTSPLPPSSVQKQQGMSESLPLPFLPDELVVEILSRLPVKSLLQFRCVCKSWMSL 356
Query: 58 FSDTHF 63
D +F
Sbjct: 357 IYDPYF 374
>BM143422
Length = 424
Score = 60.5 bits (145), Expect = 1e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYP 75
LP +LI +ILL+LPV+S+ RFKCVCKSW +L SD F +HF ++ P
Sbjct: 229 LPLDLIELILLKLPVKSVTRFKCVCKSWLSLISDPQFGFSHFDLALAVP 375
>TC216704 similar to UP|Q7PIN1 (Q7PIN1) ENSANGP00000023661 (Fragment),
partial (5%)
Length = 1232
Score = 58.5 bits (140), Expect = 5e-09
Identities = 36/141 (25%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Frame = +2
Query: 217 FVSGTLNWIVD---ERDGRATILSFDIEKETYRQVLLPQHGYAV--YSPGLYVLSNCICV 271
FV +L+W+V E D I++FD+ E + ++ LP G + + +L + +C+
Sbjct: 2 FVGNSLHWVVTRKLEPDQPDLIVAFDLTHEIFTELPLPDTGGVGGGFEIDVALLGDSLCM 181
Query: 272 CTSFLDTRWQLWMMKKYGVAESWTKLMSIPHENLLISNISLWPCVEPLFISENGVVLLMN 331
+F +++ +W+M++Y +SW KL ++ E+ + + C+ PL S +G +L+
Sbjct: 182 TVNFHNSKMDVWVMREYNRGDSWCKLFTL-EESA*VEIVQX--CLRPLGYSSDGNKVLLE 352
Query: 332 TSSSQLILYNLNSRGLYFPRI 352
+L Y+L + + RI
Sbjct: 353 HDRKRLCWYDLGKKEVTLVRI 415
>TC213957 similar to GB|AAP37713.1|30725382|BT008354 At3g23880 {Arabidopsis
thaliana;} , partial (9%)
Length = 696
Score = 55.5 bits (132), Expect = 4e-08
Identities = 27/39 (69%), Positives = 30/39 (76%)
Frame = +3
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFAN 65
LP ELI ILLR PVRS+LRFKCVCKSW +L SD F +
Sbjct: 33 LPLELIREILLRSPVRSVLRFKCVCKSWLSLISDPQFTH 149
>BG404995 similar to GP|22831068|dbj OJ1131_E05.32 {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 394
Score = 55.5 bits (132), Expect = 4e-08
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Frame = +1
Query: 10 DSTLPVAETTANKPLPFLPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFL 69
+ T PV T ++ LP E++ IL RLPVRSLLRF+ KSWK+L H H
Sbjct: 1 EETKPVLLTMSDH----LPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLT 168
Query: 70 ISTVYPQLVACESVSAYRTWEIKTYPIESLLENSSTTVIPVSNTGH------QRYTILGS 123
S L + S + L + + T+ P + H T+LGS
Sbjct: 169 RS-----LTLASNTSLILRVD------SDLYQTNFPTLDPPVSLNHPLMCYSNSITLLGS 315
Query: 124 CNGFLCL 130
CNG LC+
Sbjct: 316 CNGLLCI 336
>TC233972 weakly similar to GB|AAP37713.1|30725382|BT008354 At3g23880
{Arabidopsis thaliana;} , partial (10%)
Length = 631
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/55 (54%), Positives = 38/55 (68%), Gaps = 1/55 (1%)
Frame = -2
Query: 15 VAETTANKPLP-FLPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHF 68
+ ET K + FLP+E+I+ ILLRLPV+SL FK VCKS +L S+ HFA HF
Sbjct: 579 IGETRRQKMVXLFLPQEIIIEILLRLPVKSLPSFKFVCKS*LSLISNPHFAKWHF 415
>AI443156
Length = 414
Score = 53.9 bits (128), Expect = 1e-07
Identities = 34/117 (29%), Positives = 56/117 (47%)
Frame = +3
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNHFLISTVYPQLVACESVSAY 86
LP E++ IL RLPV+S++R + CK W+++ HF H ++ + L+ Y
Sbjct: 90 LPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFILFH--LNKSHTSLILRHRSQLY 263
Query: 87 RTWEIKTYPIESLLENSSTTVIPVSNTGHQRYTILGSCNGFLCLYDNYQRCVRLWNP 143
+ ++SLL+ + + +LGS NG LC+ N + LWNP
Sbjct: 264 ------SLDLKSLLDPNPFELSHPLMCYSNSIKVLGSSNGLLCI-SNVXDDIALWNP 413
>BI787361
Length = 423
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Frame = +3
Query: 43 SLLRFKCVCKSWKTLFSDTHFANNHFLIST----VYPQLVACESVSAYRTWEIKTYPIES 98
+L+RF+ V ++W +L D F H S V + A + + I
Sbjct: 3 ALMRFRYVSETWNSLIFDPTFVKLHLERSPKNTHVLLEFQAIYDRDVGQQVGVAPCSIRR 182
Query: 99 LLENSSTTVIPVSNTGHQRYTILGSCNGFLCLYDNY------QRC-VRLWNPSINLKSKS 151
L+EN S T+ +I GSCNG +C+ + + C RLWNP+ + S+
Sbjct: 183 LVENPSFTIDDCLTLFKHTNSIFGSCNGLVCMTKCFDVREFEEECQYRLWNPATGIMSEY 362
Query: 152 SPTI 155
SP +
Sbjct: 363 SPPL 374
>TC235149
Length = 435
Score = 43.9 bits (102), Expect = 1e-04
Identities = 22/63 (34%), Positives = 38/63 (59%), Gaps = 2/63 (3%)
Frame = +2
Query: 282 LWMMKKYGVAESWTKLMSIPHENLLISNI-SLWPCVEPLFISEN-GVVLLMNTSSSQLIL 339
+W+ +++GV SWT+L+++ +E+ + V PL +SEN V+LL N S+ +
Sbjct: 8 VWLTREFGVERSWTRLLNVSYEHFRNHGCPPYYRFVTPLCMSENEDVLLLANDEGSEFVF 187
Query: 340 YNL 342
YNL
Sbjct: 188 YNL 196
>TC219822 homologue to UP|CENB_HUMAN (P07199) Major centromere autoantigen B
(Centromere protein B) (CENP-B), partial (5%)
Length = 710
Score = 41.6 bits (96), Expect = 6e-04
Identities = 18/41 (43%), Positives = 26/41 (62%)
Frame = +1
Query: 27 LPEELIVIILLRLPVRSLLRFKCVCKSWKTLFSDTHFANNH 67
LPE L++ IL+ + V + L+ +CVCK WK+L D F H
Sbjct: 196 LPEGLMIEILVWIRVSNPLQLRCVCKRWKSLVVDPQFVKKH 318
>TC208536 similar to GB|AAR24712.1|38603934|BT010934 At5g56260 {Arabidopsis
thaliana;} , partial (87%)
Length = 675
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 2/58 (3%)
Frame = +3
Query: 281 QLWM--MKKYGVAESWTKLMSIPHENLLISNISLWPCVEPLFISENGVVLLMNTSSSQ 336
++WM M+ +E W + S P ++ L+ +SL+ VE LF ENG +L+M SS Q
Sbjct: 360 EMWMRSMQVILASEPWLLIHSDPTKSALVKRMSLFMLVEHLFEKENGCMLIMMASSYQ 533
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,896,649
Number of Sequences: 63676
Number of extensions: 379637
Number of successful extensions: 2154
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of query: 380
length of database: 12,639,632
effective HSP length: 99
effective length of query: 281
effective length of database: 6,335,708
effective search space: 1780333948
effective search space used: 1780333948
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Medicago: description of AC147013.3