TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147012.14 + phase: 0 
         (147 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC211343 similar to UP|Q6WJ05 (Q6WJ05) Central motor kinesin 1, ...   187  1e-48
TC221598 homologue to GB|AAM19966.1|20466089|AY098956 At2g32600/...    31  0.19
TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chlor...    27  3.6
TC229623 weakly similar to GB|AAO84335.1|29568133|AY231461 tafaz...    27  3.6
TC214679 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b bindi...    27  4.6
TC209300 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial...    26  6.1
TC223101                                                               26  7.9

>TC211343 similar to UP|Q6WJ05 (Q6WJ05) Central motor kinesin 1, partial
           (13%)
          Length = 665

 Score =  187 bits (476), Expect = 1e-48
 Identities = 102/122 (83%), Positives = 106/122 (86%), Gaps = 2/122 (1%)
 Frame = +1

Query: 1   MGGQ--SNAAAAAALYDHAGGAVPLHPAPAGTAPDAGDAVMARWLQSAGLQHLASPLANT 58
           MGGQ   + A+A ALYDHAG    LH A AG A DAGDAVMARWLQSAGLQHLASPLA+T
Sbjct: 304 MGGQMQQSNASATALYDHAGPG-SLHNA-AGPATDAGDAVMARWLQSAGLQHLASPLAST 477

Query: 59  AIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFNGESGSELYTPTSQTLGGAAVSDGF 118
           AIDQRLLPNLLMQGYGAQSAEEKQRLFKLMR+LNFNGESGSE YTPTSQ LGG AVSDGF
Sbjct: 478 AIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRNLNFNGESGSEPYTPTSQNLGGVAVSDGF 657

Query: 119 YS 120
           YS
Sbjct: 658 YS 663


>TC221598 homologue to GB|AAM19966.1|20466089|AY098956 At2g32600/T26B15.16
           {Arabidopsis thaliana;} , partial (64%)
          Length = 542

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 25  PAPAGTAPD--AGDAVMARWLQSAGLQHLASPLANTAID 61
           P+P   +P+  AGDA+   WL+SA   HL SP +   +D
Sbjct: 128 PSPGLWSPEPIAGDALAGLWLRSAPTPHLRSPASIPILD 12


>TC205250 similar to GB|BAB01116.1|11994113|AB026658 CND41, chloroplast
           nucleoid DNA binding protein-like {Arabidopsis
           thaliana;} , partial (67%)
          Length = 2013

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/36 (38%), Positives = 15/36 (40%)
 Frame = +1

Query: 13  LYDHAGGAVPLHPAPAGTAPDAGDAVMARWLQSAGL 48
           L  H   A PL P P G+ PD       R    AGL
Sbjct: 454 LSQHQTPACPLQPQPVGSLPDRNGTAPTRRPLDAGL 561


>TC229623 weakly similar to GB|AAO84335.1|29568133|AY231461 tafazzin exon 5
           deleted variant long form {Homo sapiens;} , partial
           (22%)
          Length = 1177

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 17  AGGAVPLHPAPAGTAPDAGDAVMARWLQSAGLQHLASPLA 56
           A    PL P P  T+P   +A  A ++ S G+  L  PL+
Sbjct: 217 ADTTTPLSPLPMATSPPPFNAASADFVISEGIHCLLPPLS 336


>TC214679 similar to UP|CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein
           CP29.3, chloroplast precursor (LHCII protein 4.3)
           (LHCB4.3), partial (55%)
          Length = 657

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 10  AAALYDHAGGAVPLHPAPAGTAPDAGDAVMARW 42
           AAA  +  G        PAG  P+ G A +ARW
Sbjct: 223 AAAAAEEKGSESETLRRPAGVVPECGAAGVARW 321


>TC209300 weakly similar to UP|Q9SI74 (Q9SI74) F23N19.12, partial (7%)
          Length = 533

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -2

Query: 62  QRLLPNLLMQGYGAQSAEEKQRL---FKLMRSLNFNGESGSELY 102
           QR L +  M+    + A++ Q L    K+++S+NFNG+  ++LY
Sbjct: 166 QRKLQD*EMEQMEKEMAQKPQVLSI*IKIIQSINFNGKGFNDLY 35


>TC223101 
          Length = 672

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
 Frame = +3

Query: 45  SAGLQHLASPLANTAIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFNGE----SGSE 100
           S GL+H A+       ++ L+ + +M+ YGA     K  L    + L   GE    + S 
Sbjct: 243 SFGLRHYATSEFELLAEELLMSDSVMKVYGALRMSVKMFLMWNSKMLIDGGEDITVATSL 422

Query: 101 LYTPTSQTLGGAAVSDGFYSPDFRGDFGAGLLDLHAMDD 139
           L       L GA+V    +S    G  G GLL+L    D
Sbjct: 423 LEASNLIVLRGASV---IHSNANLGVHGQGLLNLSGPGD 530


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,158,377
Number of Sequences: 63676
Number of extensions: 56482
Number of successful extensions: 247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of query: 147
length of database: 12,639,632
effective HSP length: 88
effective length of query: 59
effective length of database: 7,036,144
effective search space: 415132496
effective search space used: 415132496
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)